jgi.p|Nanoce1779_2|579111, mRNA_2111 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579111
Unique Name	mRNA_2111
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1543
Alignment location	scaffold_4:836232..838034 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579197
Track	FilteredModels2
ProteinId	579111

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:836232..838034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579111	gene_2111	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579111	mRNA_2111-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2111	CDS_2111	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:836232..838034+
coding sequence from alignment at scaffold_4:836232..838034+

mRNA sequence

>mRNA_2111 ID=mRNA_2111|Name=jgi.p|Nanoce1779_2|579111|organism=Nannochloropsis oceanica|type=mRNA|length=1543bp
GTCGGGCGTTGATGCGGAGAGGTTGACGCAGGCATTAGCGGTCTCGGAAG
CAGCGAAAGAAGCGCTTGAGGGGGAGCTTCATCAGCAGCGACTGGACGCG
GAGTGGTATCGGGCGGAGATAAAGCGGCTGCAGCAGAAGCAAAGTCTGGA
CGAAGAGGGACAGGGAGTCGTAGCTCCGCCAGAGACAGGGCAGCGGGGAG
AAGAGGAAGCAGGTGCCCGGCAAGCCGTGGAGGAGTTGCTCCACCAGCAG
CGACGGGAACTGGAATGGTATCGGGCGGAAACGGAGCGGTTACAACAGAG
TCAGGTTGAGGGACAAAGCGCTGTTCTGGCACCGGAAGGGGGCCTGGGAA
GGGACGAGGAAGCGGCTGCCCGGCAAGCGCTGGAGGAGGCGCTTCACCAG
CAGGAAGTCAAGGCGGCGTGGCTACAAAAGGAGATAGAGCAGCTGCGACG
AGAGCGAGATGAGCAACAGGCTGCAGTGGCGGCGGCCTCAGCAGATGCAA
GCCAGGGGGCAGAGGGGGGAGAGATGGTGCAGATGCTTGAGGGGGAGATT
CAGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTGAGTTGGAACAGCA
CCGACAAGATAAGGCCCCTATGACCGCAAGGATGACGACGATCGGTGCTA
CCATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCAGGGAGGAACTGAA
GGGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGGAACGACAGACATT
GGAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGGCAACTGGTCGAGG
GGTTTCAAAAGGTGGAGGGGAAGTTGTCGCGGGTGAATGAGCTCGAGAGC
GAAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCAAAGATGTGTTGGG
CAATGAGCGAGAGAACCACCACAGGCACCTCGAAGATTCCTTGTCGGGAC
TGAAAAACGAGATCGAGCGGCTGGTCGATGAAGTCCAACGGCTAGAGGCG
GCGGACAAAGAGTTGAGGCTAAAGAAATACAATGAATCGCTTTTCGTGCT
AAAGCGTGTGACGCATAATGTTCTTGCCAAGCAGCAGCTCAAAACCAAAC
AGCGTGCGATTTGCCGCTGGGTAACGGCTGTCAATGCGATGCAGGGGGAA
GAGCTTGTAGCGTTCCGAGAGGCGGCAAAGCAGGCACCACAGGCAGAGGA
GATCAAGCAGCTAGAGGGCGAGAACAAGGCCTTGCTCGAGGAGCTGCAGA
GGGAGCCGCCCACCCGAGAAGGTGTGATGACAGGGGCAGTGCGGGGAGGA
ACATCAGCTCCAGGAGGAAGCGGAATTGCGTCATTTTTGAGTTTTTGGCT
CAAGTTGTTCCTTGTCGGCAGCCTTTTCATGTTCCTGCAGCAGGTCTTTG
CCATGCTGGGTGGGGTTAGTTCCTACTGCTATATGGAAACAGCACGTATC
ACCATGTAATGTATTTTTAAATTCAAAAGTACCGTAGAGATATGGAACGG
TAGAATAAGGGAGAGAAAAAAGAAAAAATGCTATGTAAAGTTA

protein sequence of jgi.p|Nanoce1779_2|579111

>mRNA_2111-protein ID=mRNA_2111-protein|Name=jgi.p|Nanoce1779_2|579111|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MVQMLEGEIQRQRELLTSYEAELEQHRQDKAPMTARMTTIGATMPLTAPV
VGQQQGGTEGQMVSLQPVGDEERQTLESTIQALEEANRQLVEGFQKVEGK
LSRVNELESENRDLLLLVDELKDVLGNERENHHRHLEDSLSGLKNEIERL
VDEVQRLEAADKELRLKKYNESLFVLKRVTHNVLAKQQLKTKQRAICRWV
TAVNAMQGEELVAFREAAKQAPQAEEIKQLEGENKALLEELQREPPTREG
VMTGAVRGGTSAPGGSGIASFLSFWLKLFLVGSLFMFLQQVFAMLGGVSS
YCYMETARITM*

mRNA from alignment at scaffold_4:836232..838034+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2111 ID=mRNA_2111|Name=jgi.p|Nanoce1779_2|579111|organism=Nannochloropsis oceanica|type=mRNA|length=1803bp|location=Sequence derived from alignment at scaffold_4:836232..838034+ (Nannochloropsis oceanica)
GTCGGGCGTTGATGCGGAGAGGTTGACGCAGGCATTAGCGGTCTCGGAAG
CAGCGAAAGAAGCGCTTGAGGGGGAGCTTCATCAGCAGCGACTGGACGCG
GAGTGGTATCGGGCGGAGATAAAGCGGCTGCAGCAGAAGCAAAGTCTGGA
CGAAGAGGGACAGGGAGTCGTAGCTCCGCCAGAGACAGGGCAGCGGGGAG
AAGAGGAAGCAGGTGCCCGGCAAGCCGTGGAGGAGTTGCTCCACCAGCAG
CGACGGGAACTGGAATGGTATCGGGCGGAAACGGAGCGGTTACAACAGAG
TCAGGTTGAGGGACAAAGCGCTGTTCTGGCACCGGAAGGGGGCCTGGGAA
GGGACGAGGAAGCGGCTGCCCGGCAAGCGCTGGAGGAGGCGCTTCACCAG
CAGGAAGTCAAGGCGGCGTGGCTACAAAAGGAGATAGAGCAGCTGCGACG
AGAGCGAGATGAGCAACAGGCTGCAGTGGCGGCGGCCTCAGCAGATGCAA
GCCAGGGGGCAGAGGGGGGAGAGATGGTGCAGATGCTTGAGGGGGAGATT
CAGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTGAGTTGGAACAGCA
CCGACAAGATAAGGCCCCTATGACCGCAAGGATGACGACGATCGGTGCTA
CCATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCAGGGAGGAACTGAA
GGGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGGAACGACAGACATT
GGAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGGCAACTGGTCGAGG
GGTTTCAAAAGGTGGAGGGGAAGTTGTCGCGGGTGAATGAGGTCAGTTCA
CTGAAGTGCTTTGTTCGTGGCTTTCCAAATTGAGGGGATATTTTGACACC
AATATTTCTTCTCTCTTCCTGTTTTTCCACCTCTTTCCACAGCTCGAGAG
CGAAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCAAAGATGTGTTGG
GCAATGAGCGAGAGAACCACCACAGGCACCTCGAAGATTCCGTAAGATAG
GGAAGGCTTGGGTGGGGTGGATTAGATCAAAGTTTGTACCTACCCGTCAG
CGTCTCATGTCATAACTTTTCTTACTTGCTCTTCGCTGTAGACCTCCATA
CTGTTGATATTTAATTTCTCACCTGCGCTCCCCTAATCACGCATATACAG
TTGTCGGGACTGAAAAACGAGATCGAGCGGCTGGTCGATGAAGTCCAACG
GCTAGAGGCGGCGGACAAAGAGTTGAGGCTAAAGAAATACAATGAATCGC
TTTTCGTGCTAAAGCGTGTGACGCATAATGTTCTTGCCAAGCAGCAGCTC
AAAACCAAACAGCGTGCGATTTGCCGCTGGGTAACGGCTGTCAATGCGAT
GCAGGGGGAAGAGCTTGTAGCGTTCCGAGAGGCGGCAAAGCAGGCACCAC
AGGCAGAGGAGATCAAGCAGCTAGAGGGCGAGAACAAGGCCTTGCTCGAG
GAGCTGCAGAGGGAGCCGCCCACCCGAGAAGGTGTGATGACAGGGGCAGT
GCGGGGAGGAACATCAGCTCCAGGAGGAAGCGGAATTGCGTCATTTTTGA
GTTTTTGGCTCAAGTTGTTCCTTGTCGGCAGCCTTTTCATGTTCCTGCAG
CAGGTCTTTGCCATGCTGGGTGGGGTTAGTTCCTACTGCTATATGGAAAC
AGCACGTATCACCATGTAATGTATTTTTAAATTCAAAAGTACCGTAGAGA
TATGGAACGGTAGAATAAGGGAGAGAAAAAAGAAAAAATGCTATGTAAAG
TTA

Coding sequence (CDS) from alignment at scaffold_4:836232..838034+

>mRNA_2111 ID=mRNA_2111|Name=jgi.p|Nanoce1779_2|579111|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_4:836232..838034+ (Nannochloropsis oceanica)
ATGGTGCAGATGCTTGAGGGGGAGATTCAGCGGCAGAGGGAGCTACTGAC
GAGCTATGAGGCTGAGTTGGAACAGCACCGACAAGATAAGGCCCCTATGA
CCGCAAGGATGACGACGATCGGTGCTACCATGCCCCTGACGGCGCCTGTT
GTGGGGCAACAGCAGGGAGGAACTGAAGGGCAGATGGTCTCGTTGCAGCC
GGTGGGAGATGAGGAACGACAGACATTGGAGTCAACTATCCAGGCGCTGG
AGGAAGCCAATCGGCAACTGGTCGAGGGGTTTCAAAAGGTGGAGGGGAAG
TTGTCGCGGGTGAATGAGCTCGAGAGCGAAAATCGGGATCTGCTGCTGTT
GGTGGATGAGCTCAAAGATGTGTTGGGCAATGAGCGAGAGAACCACCACA
GGCACCTCGAAGATTCCTTGTCGGGACTGAAAAACGAGATCGAGCGGCTG
GTCGATGAAGTCCAACGGCTAGAGGCGGCGGACAAAGAGTTGAGGCTAAA
GAAATACAATGAATCGCTTTTCGTGCTAAAGCGTGTGACGCATAATGTTC
TTGCCAAGCAGCAGCTCAAAACCAAACAGCGTGCGATTTGCCGCTGGGTA
ACGGCTGTCAATGCGATGCAGGGGGAAGAGCTTGTAGCGTTCCGAGAGGC
GGCAAAGCAGGCACCACAGGCAGAGGAGATCAAGCAGCTAGAGGGCGAGA
ACAAGGCCTTGCTCGAGGAGCTGCAGAGGGAGCCGCCCACCCGAGAAGGT
GTGATGACAGGGGCAGTGCGGGGAGGAACATCAGCTCCAGGAGGAAGCGG
AATTGCGTCATTTTTGAGTTTTTGGCTCAAGTTGTTCCTTGTCGGCAGCC
TTTTCATGTTCCTGCAGCAGGTCTTTGCCATGCTGGGTGGGGTTAGTTCC
TACTGCTATATGGAAACAGCACGTATCACCATGTAAATGGTGCAGATGCT
TGAGGGGGAGATTCAGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTG
AGTTGGAACAGCACCGACAAGATAAGGCCCCTATGACCGCAAGGATGACG
ACGATCGGTGCTACCATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCA
GGGAGGAACTGAAGGGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGG
AACGACAGACATTGGAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGG
CAACTGGTCGAGGGGTTTCAAAAGGTGGAGGGGAAGTTGTCGCGGGTGAA
TGAGCTCGAGAGCGAAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCA
AAGATGTGTTGGGCAATGAGCGAGAGAACCACCACAGGCACCTCGAAGAT
TCCTTGTCGGGACTGAAAAACGAGATCGAGCGGCTGGTCGATGAAGTCCA
ACGGCTAGAGGCGGCGGACAAAGAGTTGAGGCTAAAGAAATACAATGAAT
CGCTTTTCGTGCTAAAGCGTGTGACGCATAATGTTCTTGCCAAGCAGCAG
CTCAAAACCAAACAGCGTGCGATTTGCCGCTGGGTAACGGCTGTCAATGC
GATGCAGGGGGAAGAGCTTGTAGCGTTCCGAGAGGCGGCAAAGCAGGCAC
CACAGGCAGAGGAGATCAAGCAGCTAGAGGGCGAGAACAAGGCCTTGCTC
GAGGAGCTGCAGAGGGAGCCGCCCACCCGAGAAGGTGTGATGACAGGGGC
AGTGCGGGGAGGAACATCAGCTCCAGGAGGAAGCGGAATTGCGTCATTTT
TGAGTTTTTGGCTCAAGTTGTTCCTTGTCGGCAGCCTTTTCATGTTCCTG
CAGCAGGTCTTTGCCATGCTGGGTGGGGTTAGTTCCTACTGCTATATGGA
AACAGCACGTATCACCATGTAAATGGTGCAGATGCTTGAGGGGGAGATTC
AGCGGCAGAGGGAGCTACTGACGAGCTATGAGGCTGAGTTGGAACAGCAC
CGACAAGATAAGGCCCCTATGACCGCAAGGATGACGACGATCGGTGCTAC
CATGCCCCTGACGGCGCCTGTTGTGGGGCAACAGCAGGGAGGAACTGAAG
GGCAGATGGTCTCGTTGCAGCCGGTGGGAGATGAGGAACGACAGACATTG
GAGTCAACTATCCAGGCGCTGGAGGAAGCCAATCGGCAACTGGTCGAGGG
GTTTCAAAAGGTGGAGGGGAAGTTGTCGCGGGTGAATGAGCTCGAGAGCG
AAAATCGGGATCTGCTGCTGTTGGTGGATGAGCTCAAAGATGTGTTGGGC
AATGAGCGAGAGAACCACCACAGGCACCTCGAAGATTCCTTGTCGGGACT
GAAAAACGAGATCGAGCGGCTGGTCGATGAAGTCCAACGGCTAGAGGCGG
CGGACAAAGAGTTGAGGCTAAAGAAATACAATGAATCGCTTTTCGTGCTA
AAGCGTGTGACGCATAATGTTCTTGCCAAGCAGCAGCTCAAAACCAAACA
GCGTGCGATTTGCCGCTGGGTAACGGCTGTCAATGCGATGCAGGGGGAAG
AGCTTGTAGCGTTCCGAGAGGCGGCAAAGCAGGCACCACAGGCAGAGGAG
ATCAAGCAGCTAGAGGGCGAGAACAAGGCCTTGCTCGAGGAGCTGCAGAG
GGAGCCGCCCACCCGAGAAGGTGTGATGACAGGGGCAGTGCGGGGAGGAA
CATCAGCTCCAGGAGGAAGCGGAATTGCGTCATTTTTGAGTTTTTGGCTC
AAGTTGTTCCTTGTCGGCAGCCTTTTCATGTTCCTGCAGCAGGTCTTTGC
CATGCTGGGTGGGGTTAGTTCCTACTGCTATATGGAAACAGCACGTATCA
CCATGTAA

Synonyms

Publications