Properties
| Property Name | Value |
|---|
| TranscriptId | 579185 |
| Track | FilteredModels2 |
| ProteinId | 579099 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:830967..832648 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2109 ID=mRNA_2109|Name=jgi.p|Nanoce1779_2|579099|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp
AACCACAGAAGGCAGTTGATTCGGCCACCAGCATAACCCCGCGTCCAGCA
AAAAGTACATCAAAATAAACGCATCGACCTTCCCAGCTTCTTTACCAAGC
AGGCCGTATTACTCATTGCAAGAGGCAAGACATAAACAGGCCGATGCCTC
CCGCACCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGACAGGGTC
GCATTGGTAACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAGCTCGGCA
ACTGGGTCTTCATGGCGCCAAGGTGGTCATCATGGGGCGGCGAGGGCCGT
TTTTAGAGAAGGCCGTGGATCTCCTGAAGCAGGACAGCATCGAAGCCACA
TGGTTCCAAGGCGACGTTCGACAGCCTGAGGATGCCGAGAATGCCGTGCA
AAAAGCAGTCAATACATTCGGATCTTTGAGCATTTTGGTGAACGCGGCAG
CGGGCAACTTTTTGGTGACGGCCGAAGATCTAAGCACGAAGGGCTTCAAG
ACGGTGATGGATATTGACACGGTGGGATCATTTAACATGAGTCGCTCGGC
ATTCCCTGAACTGAAGGCTGCTGCTGGGGGCGGGGTGGTCGTGAACATCA
GCGCCACGCTGCACTACGGCGCGACATGGTTTCAAGCACACGCCTCAGCG
GCCAAGGCGGCGGTAGACAGCTTAACGCGATCGTTAGGGTTGGAATGGGG
AGAGTTTGGAGTAAGAGTGGTGGGGATAGCTCCGGGGCCTATCGCTGAGA
CACCAGGCATGACTAAGCTGGCGCCGGGGGATGACAGTGATGCTATTGGA
GATCTGGTGGCGGAGATTATCCCGCTAGGTCGCATGGGCGCTAAGGCAGA
TATTGCTCTAGCGGCCGTGTTTTTATGCTCTTCCGCGGGGGGATTCATTA
CAGGGGAGACGCTGGTGGTGGATGGGGGGCACTGGCTTTTCAAGCCGCAG
ATGCTGCCGAGGGATATGGTGGCGGCGATGTCGCGTGGCATTGAGGACAA
GAGCCGTGCGATGGCGCCCACGAAGAGTAAGCTGTGAAGTGAAAGTGAAG
CTAATGGAGAATCGTATTCGTTGGTCGTGGAAATGGCGTGCGTGGGAGAA
GTAAAAAAAGAGATAGAGTAACAAGAAAGCACCTTAACTCACACTATCCG
ATTCT back to topprotein sequence of jgi.p|Nanoce1779_2|579099 >mRNA_2109-protein ID=mRNA_2109-protein|Name=jgi.p|Nanoce1779_2|579099|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MPPAPPPSPFLKNILEDRVALVTGGGSGIGFEVARQLGLHGAKVVIMGRR
GPFLEKAVDLLKQDSIEATWFQGDVRQPEDAENAVQKAVNTFGSLSILVN
AAAGNFLVTAEDLSTKGFKTVMDIDTVGSFNMSRSAFPELKAAAGGGVVV
NISATLHYGATWFQAHASAAKAAVDSLTRSLGLEWGEFGVRVVGIAPGPI
AETPGMTKLAPGDDSDAIGDLVAEIIPLGRMGAKADIALAAVFLCSSAGG
FITGETLVVDGGHWLFKPQMLPRDMVAAMSRGIEDKSRAMAPTKSKL* back to topmRNA from alignment at scaffold_4:830967..832648+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2109 ID=mRNA_2109|Name=jgi.p|Nanoce1779_2|579099|organism=Nannochloropsis oceanica|type=mRNA|length=1682bp|location=Sequence derived from alignment at scaffold_4:830967..832648+ (Nannochloropsis oceanica)
AACCACAGAAGGCAGTTGATTCGGCCACCAGCATAACCCCGCGTCCAGCA
AAAAGTACATCAAAATAAACGCATCGACCTTCCCAGCTTCTTTACCAAGC
AGGCCGTATTACTCATTGCAAGAGGCAAGACATAAACAGGCCGATGCCTC
CCGCACCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGACAGGTGA
GCGGGAGGAGTATGAAGTCGTTGTCCAGGACGTCATACAATGAATTGCGC
CAGCCACCTACACCTATGCAACCACTACCGCAATCAGGGTCGCATTGGTA
ACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAGCTCGGCAACTGGGTCT
TCATGGCGCCAAGGTACGTCTGCCTTTGACCCCTTCAGGAAAACAAAGGC
ACGCAAAACGCGTTTACATACTCCCCGACACTCTTTCCCGTGTCATTCAG
GTGGTCATCATGGGGCGGCGAGGGCCGTTTTTAGAGAAGGCCGTGGATCT
CCTGAAGCAGGACAGCATCGAAGCCACATGTACGTTTAACGTTTGATCAG
AGAGCTTGGACATCAAGGGGCTAGTCGCTCACTGACGATGACAACATCAA
TGCCATACTTACAGGGTTCCAAGGCGACGTTCGACAGCCTGAGGATGCCG
AGAATGCCGTGCAAAAAGCAGTCAATACATTCGGGTTAGCAGAGAATTTC
TTTGTGTTCGTGTGTGTATGTCACAATCGTGGAAGCTTCGTGCTTCGAGT
TTCTGATCCTGTGTTACTCTTTTCTGCCCGCACAAACAAACAGATCTTTG
AGCATTTTGGTGAACGCGGCAGCGGGCAACTTTTTGGTGACGGCCGAAGA
TCTAAGCACGAAGGGCTTCAAGGTAGGGCTTCTCAAAGGATTGCTTTAAA
CTTTTGGTAATGAAGTGCTGGATTGCGTTGCGTGTCTTAGATGAGCCACT
CGTAAGTGCAGAAACCTTGTGTCCTTACACAACTGACTCACATCCTCCCT
CATGCACTACCATACCCCTATGACCAGACGGTGATGGATATTGACACGGT
GGGATCATTTAACATGAGTCGCTCGGCATTCCCTGAACTGAAGGCTGCTG
CTGGGGGCGGGGTGGTCGTGAACATCAGCGCCACGCTGCACTACGGCGCG
ACATGGTTTCAAGCACACGCCTCAGCGGCCAAGGCGGCGGTAGACAGCTT
AACGCGATCGTTAGGGTTGGAATGGGGAGAGTTTGGAGTAAGAGTGGTGG
GGATAGCTCCGGGGCCTATCGCTGAGACACCAGGCATGACTAAGCTGGCG
CCGGGGGATGACAGTGATGCTATTGGAGATCTGGTGGCGGAGATTATCCC
GCTAGGTCGCATGGGCGCTAAGGCAGATATTGCTCTAGCGGCCGTGTTTT
TATGCTCTTCCGCGGGGGGATTCATTACAGGGGAGACGCTGGTGGTGGAT
GGGGGGCACTGGCTTTTCAAGCCGCAGATGCTGCCGAGGGATATGGTGGC
GGCGATGTCGCGTGGCATTGAGGACAAGAGCCGTGCGATGGCGCCCACGA
AGAGTAAGCTGTGAAGTGAAAGTGAAGCTAATGGAGAATCGTATTCGTTG
GTCGTGGAAATGGCGTGCGTGGGAGAAGTAAAAAAAGAGATAGAGTAACA
AGAAAGCACCTTAACTCACACTATCCGATTCT back to topCoding sequence (CDS) from alignment at scaffold_4:830967..832648+ >mRNA_2109 ID=mRNA_2109|Name=jgi.p|Nanoce1779_2|579099|organism=Nannochloropsis oceanica|type=CDS|length=5364bp|location=Sequence derived from alignment at scaffold_4:830967..832648+ (Nannochloropsis oceanica)
ATGCCTCCCGCACCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGA
CAGGGTCGCATTGGTAACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAG
CTCGGCAACTGGGTCTTCATGGCGCCAAGGTGGTCATCATGGGGCGGCGA
GGGCCGTTTTTAGAGAAGGCCGTGGATCTCCTGAAGCAGGACAGCATCGA
AGCCACATGGTTCCAAGGCGACGTTCGACAGCCTGAGGATGCCGAGAATG
CCGTGCAAAAAGCAGTCAATACATTCGGATCTTTGAGCATTTTGGTGAAC
GCGGCAGCGGGCAACTTTTTGGTGACGGCCGAAGATCTAAGCACGAAGGG
CTTCAAGACGGTGATGGATATTGACACGGTGGGATCATTTAACATGAGTC
GCTCGGCATTCCCTGAACTGAAGGCTGCTGCTGGGGGCGGGGTGGTCGTG
AACATCAGCGCCACGCTGCACTACGGCGCGACATGGTTTCAAGCACACGC
CTCAGCGGCCAAGGCGGCGGTAGACAGCTTAACGCGATCGTTAGGGTTGG
AATGGGGAGAGTTTGGAGTAAGAGTGGTGGGGATAGCTCCGGGGCCTATC
GCTGAGACACCAGGCATGACTAAGCTGGCGCCGGGGGATGACAGTGATGC
TATTGGAGATCTGGTGGCGGAGATTATCCCGCTAGGTCGCATGGGCGCTA
AGGCAGATATTGCTCTAGCGGCCGTGTTTTTATGCTCTTCCGCGGGGGGA
TTCATTACAGGGGAGACGCTGGTGGTGGATGGGGGGCACTGGCTTTTCAA
GCCGCAGATGCTGCCGAGGGATATGGTGGCGGCGATGTCGCGTGGCATTG
AGGACAAGAGCCGTGCGATGGCGCCCACGAAGAGTAAGCTGTGAATGCCT
CCCGCACCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGACAGGGT
CGCATTGGTAACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAGCTCGGC
AACTGGGTCTTCATGGCGCCAAGGTGGTCATCATGGGGCGGCGAGGGCCG
TTTTTAGAGAAGGCCGTGGATCTCCTGAAGCAGGACAGCATCGAAGCCAC
ATGGTTCCAAGGCGACGTTCGACAGCCTGAGGATGCCGAGAATGCCGTGC
AAAAAGCAGTCAATACATTCGGATCTTTGAGCATTTTGGTGAACGCGGCA
GCGGGCAACTTTTTGGTGACGGCCGAAGATCTAAGCACGAAGGGCTTCAA
GACGGTGATGGATATTGACACGGTGGGATCATTTAACATGAGTCGCTCGG
CATTCCCTGAACTGAAGGCTGCTGCTGGGGGCGGGGTGGTCGTGAACATC
AGCGCCACGCTGCACTACGGCGCGACATGGTTTCAAGCACACGCCTCAGC
GGCCAAGGCGGCGGTAGACAGCTTAACGCGATCGTTAGGGTTGGAATGGG
GAGAGTTTGGAGTAAGAGTGGTGGGGATAGCTCCGGGGCCTATCGCTGAG
ACACCAGGCATGACTAAGCTGGCGCCGGGGGATGACAGTGATGCTATTGG
AGATCTGGTGGCGGAGATTATCCCGCTAGGTCGCATGGGCGCTAAGGCAG
ATATTGCTCTAGCGGCCGTGTTTTTATGCTCTTCCGCGGGGGGATTCATT
ACAGGGGAGACGCTGGTGGTGGATGGGGGGCACTGGCTTTTCAAGCCGCA
GATGCTGCCGAGGGATATGGTGGCGGCGATGTCGCGTGGCATTGAGGACA
AGAGCCGTGCGATGGCGCCCACGAAGAGTAAGCTGTGAATGCCTCCCGCA
CCGCCGCCATCACCGTTCCTGAAAAATATTCTGGAGGACAGGGTCGCATT
GGTAACAGGCGGCGGATCTGGGATTGGCTTCGAGGTAGCTCGGCAACTGG
GTCTTCATGGCGCCAAGGTGGTCATCATGGGGCGGCGAGGGCCGTTTTTA
GAGAAGGCCGTGGATCTCCTGAAGCAGGACAGCATCGAAGCCACATGGTT
CCAAGGCGACGTTCGACAGCCTGAGGATGCCGAGAATGCCGTGCAAAAAG
CAGTCAATACATTCGGATCTTTGAGCATTTTGGTGAACGCGGCAGCGGGC
AACTTTTTGGTGACGGCCGAAGATCTAAGCACGAAGGGCTTCAAGACGGT
GATGGATATTGACACGGTGGGATCATTTAACATGAGTCGCTCGGCATTCC
CTGAACTGAAGGCTGCTGCTGGGGGCGGGGTGGTCGTGAACATCAGCGCC
ACGCTGCACTACGGCGCGACATGGTTTCAAGCACACGCCTCAGCGGCCAA
GGCGGCGGTAGACAGCTTAACGCGATCGTTAGGGTTGGAATGGGGAGAGT
TTGGAGTAAGAGTGGTGGGGATAGCTCCGGGGCCTATCGCTGAGACACCA
GGCATGACTAAGCTGGCGCCGGGGGATGACAGTGATGCTATTGGAGATCT
GGTGGCGGAGATTATCCCGCTAGGTCGCATGGGCGCTAAGGCAGATATTG
CTCTAGCGGCCGTGTTTTTATGCTCTTCCGCGGGGGGATTCATTACAGGG
GAGACGCTGGTGGTGGATGGGGGGCACTGGCTTTTCAAGCCGCAGATGCT
GCCGAGGGATATGGTGGCGGCGATGTCGCGTGGCATTGAGGACAAGAGCC
GTGCGATGGCGCCCACGAAGAGTAAGCTGTGAATGCCTCCCGCACCGCCG
CCATCACCGTTCCTGAAAAATATTCTGGAGGACAGGGTCGCATTGGTAAC
AGGCGGCGGATCTGGGATTGGCTTCGAGGTAGCTCGGCAACTGGGTCTTC
ATGGCGCCAAGGTGGTCATCATGGGGCGGCGAGGGCCGTTTTTAGAGAAG
GCCGTGGATCTCCTGAAGCAGGACAGCATCGAAGCCACATGGTTCCAAGG
CGACGTTCGACAGCCTGAGGATGCCGAGAATGCCGTGCAAAAAGCAGTCA
ATACATTCGGATCTTTGAGCATTTTGGTGAACGCGGCAGCGGGCAACTTT
TTGGTGACGGCCGAAGATCTAAGCACGAAGGGCTTCAAGACGGTGATGGA
TATTGACACGGTGGGATCATTTAACATGAGTCGCTCGGCATTCCCTGAAC
TGAAGGCTGCTGCTGGGGGCGGGGTGGTCGTGAACATCAGCGCCACGCTG
CACTACGGCGCGACATGGTTTCAAGCACACGCCTCAGCGGCCAAGGCGGC
GGTAGACAGCTTAACGCGATCGTTAGGGTTGGAATGGGGAGAGTTTGGAG
TAAGAGTGGTGGGGATAGCTCCGGGGCCTATCGCTGAGACACCAGGCATG
ACTAAGCTGGCGCCGGGGGATGACAGTGATGCTATTGGAGATCTGGTGGC
GGAGATTATCCCGCTAGGTCGCATGGGCGCTAAGGCAGATATTGCTCTAG
CGGCCGTGTTTTTATGCTCTTCCGCGGGGGGATTCATTACAGGGGAGACG
CTGGTGGTGGATGGGGGGCACTGGCTTTTCAAGCCGCAGATGCTGCCGAG
GGATATGGTGGCGGCGATGTCGCGTGGCATTGAGGACAAGAGCCGTGCGA
TGGCGCCCACGAAGAGTAAGCTGTGAATGCCTCCCGCACCGCCGCCATCA
CCGTTCCTGAAAAATATTCTGGAGGACAGGGTCGCATTGGTAACAGGCGG
CGGATCTGGGATTGGCTTCGAGGTAGCTCGGCAACTGGGTCTTCATGGCG
CCAAGGTGGTCATCATGGGGCGGCGAGGGCCGTTTTTAGAGAAGGCCGTG
GATCTCCTGAAGCAGGACAGCATCGAAGCCACATGGTTCCAAGGCGACGT
TCGACAGCCTGAGGATGCCGAGAATGCCGTGCAAAAAGCAGTCAATACAT
TCGGATCTTTGAGCATTTTGGTGAACGCGGCAGCGGGCAACTTTTTGGTG
ACGGCCGAAGATCTAAGCACGAAGGGCTTCAAGACGGTGATGGATATTGA
CACGGTGGGATCATTTAACATGAGTCGCTCGGCATTCCCTGAACTGAAGG
CTGCTGCTGGGGGCGGGGTGGTCGTGAACATCAGCGCCACGCTGCACTAC
GGCGCGACATGGTTTCAAGCACACGCCTCAGCGGCCAAGGCGGCGGTAGA
CAGCTTAACGCGATCGTTAGGGTTGGAATGGGGAGAGTTTGGAGTAAGAG
TGGTGGGGATAGCTCCGGGGCCTATCGCTGAGACACCAGGCATGACTAAG
CTGGCGCCGGGGGATGACAGTGATGCTATTGGAGATCTGGTGGCGGAGAT
TATCCCGCTAGGTCGCATGGGCGCTAAGGCAGATATTGCTCTAGCGGCCG
TGTTTTTATGCTCTTCCGCGGGGGGATTCATTACAGGGGAGACGCTGGTG
GTGGATGGGGGGCACTGGCTTTTCAAGCCGCAGATGCTGCCGAGGGATAT
GGTGGCGGCGATGTCGCGTGGCATTGAGGACAAGAGCCGTGCGATGGCGC
CCACGAAGAGTAAGCTGTGAATGCCTCCCGCACCGCCGCCATCACCGTTC
CTGAAAAATATTCTGGAGGACAGGGTCGCATTGGTAACAGGCGGCGGATC
TGGGATTGGCTTCGAGGTAGCTCGGCAACTGGGTCTTCATGGCGCCAAGG
TGGTCATCATGGGGCGGCGAGGGCCGTTTTTAGAGAAGGCCGTGGATCTC
CTGAAGCAGGACAGCATCGAAGCCACATGGTTCCAAGGCGACGTTCGACA
GCCTGAGGATGCCGAGAATGCCGTGCAAAAAGCAGTCAATACATTCGGAT
CTTTGAGCATTTTGGTGAACGCGGCAGCGGGCAACTTTTTGGTGACGGCC
GAAGATCTAAGCACGAAGGGCTTCAAGACGGTGATGGATATTGACACGGT
GGGATCATTTAACATGAGTCGCTCGGCATTCCCTGAACTGAAGGCTGCTG
CTGGGGGCGGGGTGGTCGTGAACATCAGCGCCACGCTGCACTACGGCGCG
ACATGGTTTCAAGCACACGCCTCAGCGGCCAAGGCGGCGGTAGACAGCTT
AACGCGATCGTTAGGGTTGGAATGGGGAGAGTTTGGAGTAAGAGTGGTGG
GGATAGCTCCGGGGCCTATCGCTGAGACACCAGGCATGACTAAGCTGGCG
CCGGGGGATGACAGTGATGCTATTGGAGATCTGGTGGCGGAGATTATCCC
GCTAGGTCGCATGGGCGCTAAGGCAGATATTGCTCTAGCGGCCGTGTTTT
TATGCTCTTCCGCGGGGGGATTCATTACAGGGGAGACGCTGGTGGTGGAT
GGGGGGCACTGGCTTTTCAAGCCGCAGATGCTGCCGAGGGATATGGTGGC
GGCGATGTCGCGTGGCATTGAGGACAAGAGCCGTGCGATGGCGCCCACGA
AGAGTAAGCTGTGA back to top
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