jgi.p|Nanoce1779_2|579098, mRNA_2108 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579098
Unique NamemRNA_2108
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1172
Alignment locationscaffold_4:829420..830591 -

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Properties
Property NameValue
TranscriptId579184
TrackFilteredModels2
ProteinId579098
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:829420..830591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579098gene_2108Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579098mRNA_2108-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2108CDS_2108Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2108 ID=mRNA_2108|Name=jgi.p|Nanoce1779_2|579098|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
AACAGACAGAAGGTCAACATCATGTTGCGAGGCCCGGGATGCGCGGTGGG
GCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGCACCCGGGAGCATAG
CATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACCAAAGTCGCCTTTGC
TTCGGGACACACCATCCACCACGTCACTTCATCGTAAACCCATGTCGTCC
CTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACAGGACGAAAATACTC
TTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATGCGGCCTCGAATCTT
CCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGTTTTGGCACCAGCAT
GCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAAAAGCACCAGCAGCA
GGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAGAGGGTAGTGCAGTC
CCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGGAAGATAGGCAAGCT
CCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGTAGTTACGTATTTGG
GGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGACAGTAGAGTCGGGT
GTGAACCCGTTCGATTACGGGCTGGATTCGGGATGGTTGGTTGAGAAGGC
GACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCCCTTTGTAGAGGCGA
TTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGGCCTGGATCTTGACC
AAATTCACCGAGCCTGTGCGCATGCTTGTGACGATTACCATTGTGCCGAG
GATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATGAGACGAAGATGAGC
GGGAAAAATATGCCACATTTGTTTTGTGTTGGATTTTGCATGGAGGTGGC
ATGTGAACGCCTAAGGATGTTATTACTCGCATGGAAACCAGGGTTAACTG
AATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGTTTGACTTGTGAGGA
GAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGAGACTTCTGAGGGAT
GCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATTTCCCTTCTATTACA
ACGGAAGACGTCGAATAAAATAAATAGAAGTAACCGAAATTTTCCAGGAC
AAACAACAAACGACACGCCGTC
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protein sequence of jgi.p|Nanoce1779_2|579098

>mRNA_2108-protein ID=mRNA_2108-protein|Name=jgi.p|Nanoce1779_2|579098|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MLRGPGCAVGLLRGSGVTGRHAPGSIAWVRPSAAFQYHQSRLCFGTHHPP
RHFIVNPCRPSCTGNLGAKPPQDENTLSIEGPRALTRNAASNLPSAVLLR
TPARRFGTSMRLGSSSSGDRNKSTSSRTNRSGNEKSTGEGSAVPGQATPV
VEEEGKIGKLRLMIKRYGAVAVVTYLGVYVGTLGILFATVESGVNPFDYG
LDSGWLVEKATGILEGYSWSEPFVEAIQNNPHAGNFAVAWILTKFTEPVR
MLVTITIVPRIARALGKAPAR*
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mRNA from alignment at scaffold_4:829420..830591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2108 ID=mRNA_2108|Name=jgi.p|Nanoce1779_2|579098|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp|location=Sequence derived from alignment at scaffold_4:829420..830591- (Nannochloropsis oceanica)
AACAGACAGAAGGTCAACATCATGTTGCGAGGCCCGGGATGCGCGGTGGG
GCTGTTGCGCGGAAGCGGCGTCACGGGGAGGCATGCACCCGGGAGCATAG
CATGGGTGAGGCCTTCGGCAGCATTTCAGTATCACCAAAGTCGCCTTTGC
TTCGGGACACACCATCCACCACGTCACTTCATCGTAAACCCATGTCGTCC
CTCCTGTACGGGGAATCTGGGCGCGAAGCCACCACAGGACGAAAATACTC
TTTCCATCGAGGGACCTAGAGCCCTCACGCGGAATGCGGCCTCGAATCTT
CCCTCGGCCGTCCTTCTACGTACCCCCGCCCGCCGTTTTGGCACCAGCAT
GCGGCTAGGCAGCAGCAGTAGTGGTGACCGTAATAAAAGCACCAGCAGCA
GGACCAACAGGAGTGGCAACGAGAAGAGCACAGGAGAGGGTAGTGCAGTC
CCCGGGCAAGCCACGCCAGTCGTGGAGGAGGAGGGGAAGATAGGCAAGCT
CCGGCTGATGATAAAGCGATACGGGGCCGTGGCCGTAGTTACGTATTTGG
GGGTGTACGTTGGGACCTTGGGAATTCTGTTTGCGACAGTAGAGTCGGGT
GTGAACCCGTTCGATTACGGGCTGGATTCGGGATGGTTGGTTGAGAAGGC
GACAGGGATCTTGGAAGGGTATTCGTGGAGCGAGCCCTTTGTAGAGGCGA
TTCAGAATAACCCTCATGCGGGTAATTTTGCCGTGGCCTGGATCTTGACC
AAATTCACCGAGCCTGTGCGCATGCTTGTGACGATTACCATTGTGCCGAG
GATAGCGCGGGCTTTAGGCAAGGCTCCTGCGCGATGAGACGAAGATGAGC
GGGAAAAATATGCCACATTTGTTTTGTGTTGGATTTTGCATGGAGGTGGC
ATGTGAACGCCTAAGGATGTTATTACTCGCATGGAAACCAGGGTTAACTG
AATGTAGAGAGAACGCAAGCGTAACAAAGGAGTTGTTTGACTTGTGAGGA
GAATGGCGAAGGGGAGGGCGGGGTCACTGGTACCGAGACTTCTGAGGGAT
GCAGCAAGTGGAGGAGGAAGCCAGTGCTGTCATATTTCCCTTCTATTACA
ACGGAAGACGTCGAATAAAATAAATAGAAGTAACCGAAATTTTCCAGGAC
AAACAACAAACGACACGCCGTC
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Coding sequence (CDS) from alignment at scaffold_4:829420..830591-

>mRNA_2108 ID=mRNA_2108|Name=jgi.p|Nanoce1779_2|579098|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_4:829420..830591- (Nannochloropsis oceanica)
ATGTTGCGAGGCCCGGGATGCGCGGTGGGGCTGTTGCGCGGAAGCGGCGT
CACGGGGAGGCATGCACCCGGGAGCATAGCATGGGTGAGGCCTTCGGCAG
CATTTCAGTATCACCAAAGTCGCCTTTGCTTCGGGACACACCATCCACCA
CGTCACTTCATCGTAAACCCATGTCGTCCCTCCTGTACGGGGAATCTGGG
CGCGAAGCCACCACAGGACGAAAATACTCTTTCCATCGAGGGACCTAGAG
CCCTCACGCGGAATGCGGCCTCGAATCTTCCCTCGGCCGTCCTTCTACGT
ACCCCCGCCCGCCGTTTTGGCACCAGCATGCGGCTAGGCAGCAGCAGTAG
TGGTGACCGTAATAAAAGCACCAGCAGCAGGACCAACAGGAGTGGCAACG
AGAAGAGCACAGGAGAGGGTAGTGCAGTCCCCGGGCAAGCCACGCCAGTC
GTGGAGGAGGAGGGGAAGATAGGCAAGCTCCGGCTGATGATAAAGCGATA
CGGGGCCGTGGCCGTAGTTACGTATTTGGGGGTGTACGTTGGGACCTTGG
GAATTCTGTTTGCGACAGTAGAGTCGGGTGTGAACCCGTTCGATTACGGG
CTGGATTCGGGATGGTTGGTTGAGAAGGCGACAGGGATCTTGGAAGGGTA
TTCGTGGAGCGAGCCCTTTGTAGAGGCGATTCAGAATAACCCTCATGCGG
GTAATTTTGCCGTGGCCTGGATCTTGACCAAATTCACCGAGCCTGTGCGC
ATGCTTGTGACGATTACCATTGTGCCGAGGATAGCGCGGGCTTTAGGCAA
GGCTCCTGCGCGATGA
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Synonyms
Publications