jgi.p|Nanoce1779_2|538233, mRNA_2105 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|538233
Unique Name	mRNA_2105
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1929
Alignment location	scaffold_4:822848..824911 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	538319
Track	FilteredModels2
ProteinId	538233

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:822848..824911 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538233	gene_2105	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|538233	mRNA_2105-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2105	CDS_2105	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:822848..824911+
coding sequence from alignment at scaffold_4:822848..824911+

mRNA sequence

>mRNA_2105 ID=mRNA_2105|Name=jgi.p|Nanoce1779_2|538233|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp
TTGATTTTGCAAATGCCATGAAACTACTCGTGAGCTGTAGATCATGCTCA
TTTATTTTCCCATTCTAGTCAAATTGGTATTTGGTGATTTGTGTAAGGTT
GGAATCATAGGGACAACAGATTGGACTCGACTCGAGCGACTCGCTCTCTT
TTTGAACGGTCGACTCCTACTAAACGCTCTTCTGGCCCCCTCCCCAACCC
TTCACAGGCGTCGCCCCTGTGCAGACGGCTCCAACAGACTTCGGGGTTGC
TGTACATTGTTGACATCTAGATTCAAAGGGAGATTGATGCGTCCTCCTCC
TGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCCCTCCTTGCCTCACA
GGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGTCTTCGCCCCGCAGC
AGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAATCAAGCCCTTTATGC
TGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCGTGCTGAGCTGCCAC
TTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGGTCGGTTCCCGCGTC
AAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGGGTGCTGTATGTAGG
CCAGACGCACTTTAGCACCCGCCCTGAAACCATGTGGGCAGGCATCCGAC
TGGACGAGCCAAGTGGCAACCATGACGGCGAATTTAAAGGAGAAAGGTAC
TTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCACCTCGGCAACATCAA
GGTCATCGATAATTTCGAGGCACCCCTCGCATACTCTCCTAAACTCCATT
CTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTGTCCTAGGTGCACTT
GCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTGTCCTCTCCTCGAGG
TGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCACTCACAGCATGTCGC
GCCGCACCATCACCTCCCCAGTGGATAACACCAACACTTATACCAGCACT
CGCAGAAACAGCGGAAGCATCAACAGCACCAACATCAACGACGAGTGCAT
TCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCCCCCTGCCGCTGAAA
CAGCTTCCATCATCGCCACGAACAGGGACGAGTTGCTAGATGTGACCATT
CTTGAGCAAATTTTGTACTCCTCGGCGGTCCATGAAAAGCTTGCTGGGAT
GATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAGGTTGCAGCAGGTGC
GAGAAGACACGACCGCCCAGCTGACCCGTGAGACGAGTTTCATGTCTACC
TTCGTCAATGGGGCCATCGTAAGGATTGAAGACAAGGTACGTCAAGATTA
CTCCCTCTCATCCTCCTATCTCTTGGATGGCTTGTGTCTGCACAGTGGAG
GGGATAGGCGTTCCAAAGGTGTCATTTGTTGTGATTGTCAGCCATCTGAA
CGTAGGCACATCCATCCTCAGTTGACCCATCGTTTCTCCCCCTCCAAACC
CACCTATCTACAGATCACGGAGCTCAAGGATAGTATCATCATAAATGCCG
TGGCAGCTACCGGTAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAG
CAAGCCCTTGCAGCGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTT
GCAGGAGGAGGTGAAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCA
TGTCTGAGGAGGAGACGGAGGGCCCCTAGCTAGGCTGCTTAGCTTCAGGG
AAGGAGAGGAGGGTAGAAAGGGAAAATCGAAGACAAAGAGATGTGTAAGA
GAAGCGACTGGAAGAATTCACAGACGGAGATGCAACGTAGCGGATAAGGG
CCCGCTTGTGTGCACCGGAGCGAAGGGAGAAACAGAAGCCCAAAACGCGC
ATATTTATGTAACAAAAGATAGCACAATT

protein sequence of jgi.p|Nanoce1779_2|538233

>mRNA_2105-protein ID=mRNA_2105-protein|Name=jgi.p|Nanoce1779_2|538233|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MLIYFPILVKLVFGDLCKVGIIGTTDWTRLERLALFLNGRLLLNALLAPS
PTLHRRRPCADGSNRLRGCCTLLTSRFKGRLMRPPPVHSRVENDILSPSL
PHRRASSHTGSIRPSSPRSSFGSRSPAAANNQALYAAIPALPPSSHHRAE
LPLPRSPLDPSTPRVGSRVKVSHKQKTLFGRVLYVGQTHFSTRPETMWAG
IRLDEPSGNHDGEFKGERYFTCEPKHGLFQHLGNIKVIDNFEAPLAYSPK
LHSTPLASASTASSVLGALAQSPNTRRADNLSSPRGAATVPQMLCPSTHS
MSRRTITSPVDNTNTYTSTRRNSGSINSTNINDECIQSITLPDTARKPPA
AETASIIATNRDELLDVTILEQILYSSAVHEKLAGMISEEVEKKVQERLQ
QVREDTTAQLTRETSFMSTFVNGAIVRIEDKVRQDYSLSSSYLLDGLCLH
SGGDRRSKGVICCDCQPSERRHIHPQLTHRFSPSKPTYLQITELKDSIII
NAVAATGSREDQEQMERNKQALAAIMEIASATKQQLQEEVKQRAEAIQQL
CIMSEEETEGP*

mRNA from alignment at scaffold_4:822848..824911+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2105 ID=mRNA_2105|Name=jgi.p|Nanoce1779_2|538233|organism=Nannochloropsis oceanica|type=mRNA|length=2064bp|location=Sequence derived from alignment at scaffold_4:822848..824911+ (Nannochloropsis oceanica)
TTGATTTTGCAAATGCCATGAAACTACTCGTGAGCTGTAGATCATGCTCA
TTTATTTTCCCATTCTAGTCAAATTGGTATTTGGTGATTTGTGTAAGGTT
GGAATCATAGGGACAACAGATTGGACTCGACTCGAGCGACTCGCTCTCTT
TTTGAACGGTCGACTCCTACTAAACGCTCTTCTGGCCCCCTCCCCAACCC
TTCACAGGCGTCGCCCCTGTGCAGACGGCTCCAACAGACTTCGGGGTTGC
TGTACATTGTTGACATCTAGATTCAAAGGGAGATTGATGCGTCCTCCTCC
TGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCCCTCCTTGCCTCACA
GGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGTCTTCGCCCCGCAGC
AGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAATCAAGCCCTTTATGC
TGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCGTGCTGAGCTGCCAC
TTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGGTCGGTTCCCGCGTC
AAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGGGTGCTGTATGTAGG
CCAGACGCACTTTAGCACCCGCCCTGAAACCATGTGGGCAGGCATCCGAC
TGGACGAGCCAAGTGGCAACCATGACGGCGAATTTAAAGGAGAAAGGTAC
TTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCACCTCGGCAACATCAA
GGTCATCGATAATTTCGAGGCACCCCTCGCATACTCTCCTAAACTCCATT
CTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTGTCCTAGGTGCACTT
GCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTGTCCTCTCCTCGAGG
TGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCACTCACAGCATGTCGC
GCCGCACCATCACCTCCCCAGTGGATAACACCAACACTTATACCAGCACT
CGCAGAAACAGCGGAAGCATCAACAGCACCAACATCAACGACGAGTGCAT
TCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCCCCCTGCCGCTGAAA
CAGCTTCCATCATCGCCACGAACAGGGACGAGTTGCTAGATGTGACCATT
CTTGAGGTGGGTTTATGCGCTGGCTATGGAGGGACATATACTTGGGCGGG
GAGGAGCAGGGGAAGAGAGCAGCGCGACGTAATTGATAAAACTCACATAC
GGACACCCTCCCTTTCCCCCCTGTTTTTTTATTCCACACAGCAAATTTTG
TACTCCTCGGCGGTCCATGAAAAGCTTGCTGGGATGATCAGCGAGGAGGT
GGAAAAAAAGGTGCAAGAGAGGTTGCAGCAGGTGCGAGAAGACACGACCG
CCCAGCTGACCCGTGAGACGAGTTTCATGTCTACCTTCGTCAATGGGGCC
ATCGTAAGGATTGAAGACAAGGTACGTCAAGATTACTCCCTCTCATCCTC
CTATCTCTTGGATGGCTTGTGTCTGCACAGTGGAGGGGATAGGCGTTCCA
AAGGTGTCATTTGTTGTGATTGTCAGCCATCTGAACGTAGGCACATCCAT
CCTCAGTTGACCCATCGTTTCTCCCCCTCCAAACCCACCTATCTACAGAT
CACGGAGCTCAAGGATAGTATCATCATAAATGCCGTGGCAGCTACCGGTA
GCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGCAAGCCCTTGCAGCG
ATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTGCAGGAGGAGGTGAA
ACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCATGTCTGAGGAGGAGA
CGGAGGGCCCCTAGCTAGGCTGCTTAGCTTCAGGGAAGGAGAGGAGGGTA
GAAAGGGAAAATCGAAGACAAAGAGATGTGTAAGAGAAGCGACTGGAAGA
ATTCACAGACGGAGATGCAACGTAGCGGATAAGGGCCCGCTTGTGTGCAC
CGGAGCGAAGGGAGAAACAGAAGCCCAAAACGCGCATATTTATGTAACAA
AAGATAGCACAATT

Coding sequence (CDS) from alignment at scaffold_4:822848..824911+

>mRNA_2105 ID=mRNA_2105|Name=jgi.p|Nanoce1779_2|538233|organism=Nannochloropsis oceanica|type=CDS|length=3372bp|location=Sequence derived from alignment at scaffold_4:822848..824911+ (Nannochloropsis oceanica)
ATGCTCATTTATTTTCCCATTCTAGTCAAATTGGTATTTGGTGATTTGTG
TAAGGTTGGAATCATAGGGACAACAGATTGGACTCGACTCGAGCGACTCG
CTCTCTTTTTGAACGGTCGACTCCTACTAAACGCTCTTCTGGCCCCCTCC
CCAACCCTTCACAGGCGTCGCCCCTGTGCAGACGGCTCCAACAGACTTCG
GGGTTGCTGTACATTGTTGACATCTAGATTCAAAGGGAGATTGATGCGTC
CTCCTCCTGTCCACAGTCGCGTCGAAAACGACATTTTGTCCCCCTCCTTG
CCTCACAGGCGGGCAAGTAGCCACACAGGGAGTATTCGCCCGTCTTCGCC
CCGCAGCAGTTTCGGGAGTCGCAGCCCCGCTGCTGCTAACAATCAAGCCC
TTTATGCTGCTATTCCTGCGCTTCCTCCTTCCTCGCACCATCGTGCTGAG
CTGCCACTTCCCCGAAGCCCTTTAGACCCCTCCACCCCCCGGGTCGGTTC
CCGCGTCAAAGTGTCGCACAAGCAGAAAACGTTGTTTGGCAGGGTGCTGT
ATGTAGGCCAGACGCACTTTAGCACCCGCCCTGAAACCATGTGGGCAGGC
ATCCGACTGGACGAGCCAAGTGGCAACCATGACGGCGAATTTAAAGGAGA
AAGGTACTTTACCTGCGAACCAAAGCACGGGCTTTTCCAGCACCTCGGCA
ACATCAAGGTCATCGATAATTTCGAGGCACCCCTCGCATACTCTCCTAAA
CTCCATTCTACTCCGCTTGCCTCTGCCTCGACAGCCTCCTCTGTCCTAGG
TGCACTTGCGCAGTCCCCCAACACCAGAAGAGCAGACAACCTGTCCTCTC
CTCGAGGTGCCGCAACAGTACCCCAAATGCTCTGCCCGTCCACTCACAGC
ATGTCGCGCCGCACCATCACCTCCCCAGTGGATAACACCAACACTTATAC
CAGCACTCGCAGAAACAGCGGAAGCATCAACAGCACCAACATCAACGACG
AGTGCATTCAGTCTATAACTTTGCCCGATACCGCTCGCAAGCCCCCTGCC
GCTGAAACAGCTTCCATCATCGCCACGAACAGGGACGAGTTGCTAGATGT
GACCATTCTTGAGCAAATTTTGTACTCCTCGGCGGTCCATGAAAAGCTTG
CTGGGATGATCAGCGAGGAGGTGGAAAAAAAGGTGCAAGAGAGGTTGCAG
CAGGTGCGAGAAGACACGACCGCCCAGCTGACCCGTGAGACGAGTTTCAT
GTCTACCTTCGTCAATGGGGCCATCGTAAGGATTGAAGACAAGGTACGTC
AAGATTACTCCCTCTCATCCTCCTATCTCTTGGATGGCTTGTGTCTGCAC
AGTGGAGGGGATAGGCGTTCCAAAGGTGTCATTTGTTGTGATTGTCAGCC
ATCTGAACGTAGGCACATCCATCCTCAGTTGACCCATCGTTTCTCCCCCT
CCAAACCCACCTATCTACAGATCACGGAGCTCAAGGATAGTATCATCATA
AATGCCGTGGCAGCTACCGGTAGCAGAGAGGACCAAGAGCAAATGGAAAG
GAATAAGCAAGCCCTTGCAGCGATCATGGAAATCGCCAGCGCAACCAAAC
AGCAGTTGCAGGAGGAGGTGAAACAACGCGCGGAGGCCATCCAGCAGCTG
TGTATCATGTCTGAGGAGGAGACGGAGGGCCCCTAGATGCTCATTTATTT
TCCCATTCTAGTCAAATTGGTATTTGGTGATTTGTGTAAGGTTGGAATCA
TAGGGACAACAGATTGGACTCGACTCGAGCGACTCGCTCTCTTTTTGAAC
GGTCGACTCCTACTAAACGCTCTTCTGGCCCCCTCCCCAACCCTTCACAG
GCGTCGCCCCTGTGCAGACGGCTCCAACAGACTTCGGGGTTGCTGTACAT
TGTTGACATCTAGATTCAAAGGGAGATTGATGCGTCCTCCTCCTGTCCAC
AGTCGCGTCGAAAACGACATTTTGTCCCCCTCCTTGCCTCACAGGCGGGC
AAGTAGCCACACAGGGAGTATTCGCCCGTCTTCGCCCCGCAGCAGTTTCG
GGAGTCGCAGCCCCGCTGCTGCTAACAATCAAGCCCTTTATGCTGCTATT
CCTGCGCTTCCTCCTTCCTCGCACCATCGTGCTGAGCTGCCACTTCCCCG
AAGCCCTTTAGACCCCTCCACCCCCCGGGTCGGTTCCCGCGTCAAAGTGT
CGCACAAGCAGAAAACGTTGTTTGGCAGGGTGCTGTATGTAGGCCAGACG
CACTTTAGCACCCGCCCTGAAACCATGTGGGCAGGCATCCGACTGGACGA
GCCAAGTGGCAACCATGACGGCGAATTTAAAGGAGAAAGGTACTTTACCT
GCGAACCAAAGCACGGGCTTTTCCAGCACCTCGGCAACATCAAGGTCATC
GATAATTTCGAGGCACCCCTCGCATACTCTCCTAAACTCCATTCTACTCC
GCTTGCCTCTGCCTCGACAGCCTCCTCTGTCCTAGGTGCACTTGCGCAGT
CCCCCAACACCAGAAGAGCAGACAACCTGTCCTCTCCTCGAGGTGCCGCA
ACAGTACCCCAAATGCTCTGCCCGTCCACTCACAGCATGTCGCGCCGCAC
CATCACCTCCCCAGTGGATAACACCAACACTTATACCAGCACTCGCAGAA
ACAGCGGAAGCATCAACAGCACCAACATCAACGACGAGTGCATTCAGTCT
ATAACTTTGCCCGATACCGCTCGCAAGCCCCCTGCCGCTGAAACAGCTTC
CATCATCGCCACGAACAGGGACGAGTTGCTAGATGTGACCATTCTTGAGC
AAATTTTGTACTCCTCGGCGGTCCATGAAAAGCTTGCTGGGATGATCAGC
GAGGAGGTGGAAAAAAAGGTGCAAGAGAGGTTGCAGCAGGTGCGAGAAGA
CACGACCGCCCAGCTGACCCGTGAGACGAGTTTCATGTCTACCTTCGTCA
ATGGGGCCATCGTAAGGATTGAAGACAAGGTACGTCAAGATTACTCCCTC
TCATCCTCCTATCTCTTGGATGGCTTGTGTCTGCACAGTGGAGGGGATAG
GCGTTCCAAAGGTGTCATTTGTTGTGATTGTCAGCCATCTGAACGTAGGC
ACATCCATCCTCAGTTGACCCATCGTTTCTCCCCCTCCAAACCCACCTAT
CTACAGATCACGGAGCTCAAGGATAGTATCATCATAAATGCCGTGGCAGC
TACCGGTAGCAGAGAGGACCAAGAGCAAATGGAAAGGAATAAGCAAGCCC
TTGCAGCGATCATGGAAATCGCCAGCGCAACCAAACAGCAGTTGCAGGAG
GAGGTGAAACAACGCGCGGAGGCCATCCAGCAGCTGTGTATCATGTCTGA
GGAGGAGACGGAGGGCCCCTAG

Synonyms

Publications