jgi.p|Nanoce1779_2|563740, mRNA_2102 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563740
Unique NamemRNA_2102
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length825
Alignment locationscaffold_4:816546..817434 -

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Properties
Property NameValue
TranscriptId563826
TrackFilteredModels2
ProteinId563740
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:816546..817434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563740gene_2102Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563740mRNA_2102-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2102CDS_2102Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2102 ID=mRNA_2102|Name=jgi.p|Nanoce1779_2|563740|organism=Nannochloropsis oceanica|type=mRNA|length=825bp
ATGGCGACGGGTATTGGATGCGTCGTGTGCGGGCCTGACCCCGGCGGCTT
CTCATTTACTTGGGAAGACATTGATCCCCACATAACGCAGCGACAGTTGA
ACAAGGGCAACCTGGTCCTTCACGTAGAAAAGAACCAGAAGCATCTGCAA
CGTATGAGGATGGCAGCAGACAAGGCCTCACGGAAGGCCGGGGGAGGTGG
ACGTTTCCTCAGCTATTTCCAGACGTTCGTGGATGTAGTGGTGGAGATTG
TGGATCTAGAAGTGGAGGTGTTATTGTTCATGATGTTGGTGTCGGTGTTG
GTGCTGCTGCCACCGCTGGTGGTGGAGTTGGCGAAACAGGAGAGGAGCCA
CAAGAGCAGCAGCCACCCGTCCTTGACGCTAGTGCCGGTCAAAGTGGGAG
CGGAAGTTCCCTGGAGGTTGTACGGGGGCTTGTGTCGGAGAGTTATCGCC
ACTGCAGAGACTAAGGTGGACATGCATTTGGTCGCCGTGTCTGTTGCGGA
TGAGGAAGGTTTCTACATCCTTCACACCAAAGAGAGCATCACGGACAAGC
CGTTGCCTTTCAAGGATGATGAGGTTGTAATTGTCATGAAGCCTCAAGTG
ATGGTGGATGAGGGGACAGGCAAAACCTTCTTTCACCTGAAGAAGAAAGA
CTTGGAGAGGCAACTGAAAGTTTTTGAAGAGCTTTTTGAGGACTTGGGTT
ACAACAATGTCCTGCCGCAGAGGCTTCCGCACAGGCCGAGCACGGTGTTA
CCGGAGCCTGTCACGAAGGAGATGCCATTGGCAAAGAAAGAAATCAATGA
GAAAGTGTGTTGTTTGTGCAATTAA
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protein sequence of jgi.p|Nanoce1779_2|563740

>mRNA_2102-protein ID=mRNA_2102-protein|Name=jgi.p|Nanoce1779_2|563740|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MATGIGCVVCGPDPGGFSFTWEDIDPHITQRQLNKGNLVLHVEKNQKHLQ
RMRMAADKASRKAGGGGRFLSYFQTFVDVVVEIVDLEVEVLLFMMLVSVL
VLLPPLVVELAKQERSHKSSSHPSLTLVPVKVGAEVPWRLYGGLCRRVIA
TAETKVDMHLVAVSVADEEGFYILHTKESITDKPLPFKDDEVVIVMKPQV
MVDEGTGKTFFHLKKKDLERQLKVFEELFEDLGYNNVLPQRLPHRPSTVL
PEPVTKEMPLAKKEINEKVCCLCN*
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mRNA from alignment at scaffold_4:816546..817434-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2102 ID=mRNA_2102|Name=jgi.p|Nanoce1779_2|563740|organism=Nannochloropsis oceanica|type=mRNA|length=889bp|location=Sequence derived from alignment at scaffold_4:816546..817434- (Nannochloropsis oceanica)
ATGGCGACGGGTATTGGATGCGTCGTGTGCGGGCCTGACCCCGGCGGCTT
CTCATTTACTTGGGAAGACATTGATCCCCACATAACGCAGCGACAGTTGA
ACAAGGGCAACCTGGTCCTTCACGTAGAAAAGAACCAGAAGCATCTGCAA
CGTATGAGGATGGCAGCAGACAAGGCCTCACGGAAGGCCGGGGGAGGTGG
ACGTTTCCTCAGCTATTTCCAGACGGTCAGCGCTCCTCCTCCTTCCCTTC
ATCCTCCTCACCCTCCCTCTGCTGGTGGTGGTGGTGTAGTTCGTGGATGT
AGTGGTGGAGATTGTGGATCTAGAAGTGGAGGTGTTATTGTTCATGATGT
TGGTGTCGGTGTTGGTGCTGCTGCCACCGCTGGTGGTGGAGTTGGCGAAA
CAGGAGAGGAGCCACAAGAGCAGCAGCCACCCGTCCTTGACGCTAGTGCC
GGTCAAAGTGGGAGCGGAAGTTCCCTGGAGGTTGTACGGGGGCTTGTGTC
GGAGAGTTATCGCCACTGCAGAGACTAAGGTGGACATGCATTTGGTCGCC
GTGTCTGTTGCGGATGAGGAAGGTTTCTACATCCTTCACACCAAAGAGAG
CATCACGGACAAGCCGTTGCCTTTCAAGGATGATGAGGTTGTAATTGTCA
TGAAGCCTCAAGTGATGGTGGATGAGGGGACAGGCAAAACCTTCTTTCAC
CTGAAGAAGAAAGACTTGGAGAGGCAACTGAAAGTTTTTGAAGAGCTTTT
TGAGGACTTGGGTTACAACAATGTCCTGCCGCAGAGGCTTCCGCACAGGC
CGAGCACGGTGTTACCGGAGCCTGTCACGAAGGAGATGCCATTGGCAAAG
AAAGAAATCAATGAGAAAGTGTGTTGTTTGTGCAATTAA
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Coding sequence (CDS) from alignment at scaffold_4:816546..817434-

>mRNA_2102 ID=mRNA_2102|Name=jgi.p|Nanoce1779_2|563740|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_4:816546..817434- (Nannochloropsis oceanica)
TTCGTGGATGTAGTGGTGGAGATTGTGGATCTAGAAGTGGAGGTGTTATT
GTTCATGATGTTGGTGTCGGTGTTGGTGCTGCTGCCACCGCTGGTGGTGG
AGTTGGCGAAACAGGAGAGGAGCCACAAGAGCAGCAGCCACCCGTCCTTG
ACGCTAGTGCCGGTCAAAGTGGGAGCGGAAGTTCCCTGGAGGTTGTACGG
GGGCTTGTGTCGGAGAGTTATCGCCACTGCAGAGACTAAGGTGGACATGC
ATTTGGTCGCCGTGTCTGTTGCGGATGAGGAAGGTTTCTACATCCTTCAC
ACCAAAGAGAGCATCACGGACAAGCCGTTGCCTTTCAAGGATGATGAGGT
TGTAATTGTCATGAAGCCTCAAGTGATGGTGGATGAGGGGACAGGCAAAA
CCTTCTTTCACCTGAAGAAGAAAGACTTGGAGAGGCAACTGAAAGTTTTT
GAAGAGCTTTTTGAGGACTTGGGTTACAACAATGTCCTGCCGCAGAGGCT
TCCGCACAGGCCGAGCACGGTGTTACCGGAGCCTGTCACGAAGGAGATGC
CATTGGCAAAGAAAGAAATCAATGAGAAAGTGTGTTGTTTGTGCAATTAA
ATGGCGACGGGTATTGGATGCGTCGTGTGCGGGCCTGACCCCGGCGGCTT
CTCATTTACTTGGGAAGACATTGATCCCCACATAACGCAGCGACAGTTGA
ACAAGGGCAACCTGGTCCTTCACGTAGAAAAGAACCAGAAGCATCTGCAA
CGTATGAGGATGGCAGCAGACAAGGCCTCACGGAAGGCCGGGGGAGGTGG
ACGTTTCCTCAGCTATTTCCAGACGTTCGTGGATGTAGTGGTGGAGATTG
TGGATCTAGAAGTGGAGGTGTTATTGTTCATGATGTTGGTGTCGGTGTTG
GTGCTGCTGCCACCGCTGGTGGTGGAGTTGGCGAAACAGGAGAGGAGCCA
CAAGAGCAGCAGCCACCCGTCCTTGACGCTAGTGCCGGTCAAAGTGGGAG
CGGAAGTTCCCTGGAGGTTGTACGGGGGCTTGTGTCGGAGAGTTATCGCC
ACTGCAGAGACTAAGGTGGACATGCATTTGGTCGCCGTGTCTGTTGCGGA
TGAGGAAGGTTTCTACATCCTTCACACCAAAGAGAGCATCACGGACAAGC
CGTTGCCTTTCAAGGATGATGAGGTTGTAATTGTCATGAAGCCTCAAGTG
ATGGTGGATGAGGGGACAGGCAAAACCTTCTTTCACCTGAAGAAGAAAGA
CTTGGAGAGGCAACTGAAAGTTTTTGAAGAGCTTTTTGAGGACTTGGGTT
ACAACAATGTCCTGCCGCAGAGGCTTCCGCACAGGCCGAGCACGGTGTTA
CCGGAGCCTGTCACGAAGGAGATGCCATTGGCAAAGAAAGAAATCAATGA
GAAAGTGTGTTGTTTGTGCAATTAAATGGCGACGGGTATTGGATGCGTCG
TGTGCGGGCCTGACCCCGGCGGCTTCTCATTTACTTGGGAAGACATTGAT
CCCCACATAACGCAGCGACAGTTGAACAAGGGCAACCTGGTCCTTCACGT
AGAAAAGAACCAGAAGCATCTGCAACGTATGAGGATGGCAGCAGACAAGG
CCTCACGGAAGGCCGGGGGAGGTGGACGTTTCCTCAGCTATTTCCAGACG
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Synonyms
Publications