jgi.p|Nanoce1779_2|579072, mRNA_2100 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579072
Unique NamemRNA_2100
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1201
Alignment locationscaffold_4:813581..814781 -

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Properties
Property NameValue
TranscriptId579158
TrackFilteredModels2
ProteinId579072
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:813581..814781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579072gene_2100Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579072mRNA_2100-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2100CDS_2100Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2100 ID=mRNA_2100|Name=jgi.p|Nanoce1779_2|579072|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp
AGCCATATTATATTAGAACATTTGATTTCGAGCAGATGGCCTGGTCGCAA
CAACCTCCTTTCCTCGGAGCTCTTCAACTCCTTTTCCTCGCCTCTACAGT
CAGCACAGCATCAAGCGTGAACCCTAAGGTAGCTTTTGTCCATGGTCTTG
CCCGGACCACGTCCCTCTTCTGTCCACCATACTTATTGTCACTTCGGTCT
AGCAGTATTTCCGCAGCACCCGGCCCAGACAAGCAAGCTGTCCGAAGACG
CACACCAAGATACGCCGCGAAAGGAGACGGGACGACGACAAATGCAGCCA
TCGAGCGGCCACTCTTGGACATGAACGGCTTCGTGGCAGTGTACAAACCG
AAGGATTGGTCCTCAAACGATGTCGTTCAAAAAGTTCGCGGGGTTTTGGA
GAAGGAAGCGAGACAGAGAGCAGGTACCAAAGTGAAAGTCAAGGTTGGGC
ATGGCGGGACCCTCGACCCCATGGCCACGGGCGTCCTGGTCCTGGGGGTG
GGTACTGCTTGCCGAGATCTCAGCTTTTATCTGAAAGGTTCCAAAGCTTA
CCGGGCTGTTGGTTTGTTGGGCTCGGAGTACGATACAATGGATTCCACGG
GCCAAATAACCGAGACAGTGGATGTAGCGCATGTGACGCCCGAAACTCTC
GAAGCGGCCTTAGGGGCGTTCCGTGGCAACATCATGCAGCGGCCACCTGC
ATTTTCTGCTCTGAGAAAGAATGGGAAACGTCTTTATGAGCTGGCCCGCA
AGGGAGAAGTGGTGGAGGCGGAGCCCCGGCCCGTACAGGTTAATCTTTTG
AATTTAGTCCCAGCAGAAGAGGAGGCCGGGAAAGTGATGCCTTGGCCGCA
CTTTGGATTAGAAATTGAGTGCCAGGGTGGAACGTACGTACGCTCGCTCA
TTTCAGACCTGGCTCGGACTGTAGATGCACGCGCACACATGACCGCTCTG
GTGCGGACGAAGCAGGGACCTTTTTTCCTTAAGGATTGCTTGCCCGAGGA
GACTTGGAAGACCGACGCCGAAGCCATTGTCCTTCAACTTGTAAAGAAGT
AAATTCAAGAAAGTGAAATAAGTGGAACATTAAGATGAAAATGCTGTTTA
GTAGCATATTTTTTCAAGTGTAGATGATGAGCATACTCTTGCGCACAACT
GACGCATCTACACAAAACAAAAACAAGCAGGCAGGGGCTGCATTTATCGG
C
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protein sequence of jgi.p|Nanoce1779_2|579072

>mRNA_2100-protein ID=mRNA_2100-protein|Name=jgi.p|Nanoce1779_2|579072|organism=Nannochloropsis oceanica|type=polypeptide|length=339bp
MAWSQQPPFLGALQLLFLASTVSTASSVNPKVAFVHGLARTTSLFCPPYL
LSLRSSSISAAPGPDKQAVRRRTPRYAAKGDGTTTNAAIERPLLDMNGFV
AVYKPKDWSSNDVVQKVRGVLEKEARQRAGTKVKVKVGHGGTLDPMATGV
LVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHV
TPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEPRPV
QVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARA
HMTALVRTKQGPFFLKDCLPEETWKTDAEAIVLQLVKK*
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mRNA from alignment at scaffold_4:813581..814781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2100 ID=mRNA_2100|Name=jgi.p|Nanoce1779_2|579072|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at scaffold_4:813581..814781- (Nannochloropsis oceanica)
AGCCATATTATATTAGAACATTTGATTTCGAGCAGATGGCCTGGTCGCAA
CAACCTCCTTTCCTCGGAGCTCTTCAACTCCTTTTCCTCGCCTCTACAGT
CAGCACAGCATCAAGCGTGAACCCTAAGGTAGCTTTTGTCCATGGTCTTG
CCCGGACCACGTCCCTCTTCTGTCCACCATACTTATTGTCACTTCGGTCT
AGCAGTATTTCCGCAGCACCCGGCCCAGACAAGCAAGCTGTCCGAAGACG
CACACCAAGATACGCCGCGAAAGGAGACGGGACGACGACAAATGCAGCCA
TCGAGCGGCCACTCTTGGACATGAACGGCTTCGTGGCAGTGTACAAACCG
AAGGATTGGTCCTCAAACGATGTCGTTCAAAAAGTTCGCGGGGTTTTGGA
GAAGGAAGCGAGACAGAGAGCAGGTACCAAAGTGAAAGTCAAGGTTGGGC
ATGGCGGGACCCTCGACCCCATGGCCACGGGCGTCCTGGTCCTGGGGGTG
GGTACTGCTTGCCGAGATCTCAGCTTTTATCTGAAAGGTTCCAAAGCTTA
CCGGGCTGTTGGTTTGTTGGGCTCGGAGTACGATACAATGGATTCCACGG
GCCAAATAACCGAGACAGTGGATGTAGCGCATGTGACGCCCGAAACTCTC
GAAGCGGCCTTAGGGGCGTTCCGTGGCAACATCATGCAGCGGCCACCTGC
ATTTTCTGCTCTGAGAAAGAATGGGAAACGTCTTTATGAGCTGGCCCGCA
AGGGAGAAGTGGTGGAGGCGGAGCCCCGGCCCGTACAGGTTAATCTTTTG
AATTTAGTCCCAGCAGAAGAGGAGGCCGGGAAAGTGATGCCTTGGCCGCA
CTTTGGATTAGAAATTGAGTGCCAGGGTGGAACGTACGTACGCTCGCTCA
TTTCAGACCTGGCTCGGACTGTAGATGCACGCGCACACATGACCGCTCTG
GTGCGGACGAAGCAGGGACCTTTTTTCCTTAAGGATTGCTTGCCCGAGGA
GACTTGGAAGACCGACGCCGAAGCCATTGTCCTTCAACTTGTAAAGAAGT
AAATTCAAGAAAGTGAAATAAGTGGAACATTAAGATGAAAATGCTGTTTA
GTAGCATATTTTTTCAAGTGTAGATGATGAGCATACTCTTGCGCACAACT
GACGCATCTACACAAAACAAAAACAAGCAGGCAGGGGCTGCATTTATCGG
C
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Coding sequence (CDS) from alignment at scaffold_4:813581..814781-

>mRNA_2100 ID=mRNA_2100|Name=jgi.p|Nanoce1779_2|579072|organism=Nannochloropsis oceanica|type=CDS|length=1017bp|location=Sequence derived from alignment at scaffold_4:813581..814781- (Nannochloropsis oceanica)
ATGGCCTGGTCGCAACAACCTCCTTTCCTCGGAGCTCTTCAACTCCTTTT
CCTCGCCTCTACAGTCAGCACAGCATCAAGCGTGAACCCTAAGGTAGCTT
TTGTCCATGGTCTTGCCCGGACCACGTCCCTCTTCTGTCCACCATACTTA
TTGTCACTTCGGTCTAGCAGTATTTCCGCAGCACCCGGCCCAGACAAGCA
AGCTGTCCGAAGACGCACACCAAGATACGCCGCGAAAGGAGACGGGACGA
CGACAAATGCAGCCATCGAGCGGCCACTCTTGGACATGAACGGCTTCGTG
GCAGTGTACAAACCGAAGGATTGGTCCTCAAACGATGTCGTTCAAAAAGT
TCGCGGGGTTTTGGAGAAGGAAGCGAGACAGAGAGCAGGTACCAAAGTGA
AAGTCAAGGTTGGGCATGGCGGGACCCTCGACCCCATGGCCACGGGCGTC
CTGGTCCTGGGGGTGGGTACTGCTTGCCGAGATCTCAGCTTTTATCTGAA
AGGTTCCAAAGCTTACCGGGCTGTTGGTTTGTTGGGCTCGGAGTACGATA
CAATGGATTCCACGGGCCAAATAACCGAGACAGTGGATGTAGCGCATGTG
ACGCCCGAAACTCTCGAAGCGGCCTTAGGGGCGTTCCGTGGCAACATCAT
GCAGCGGCCACCTGCATTTTCTGCTCTGAGAAAGAATGGGAAACGTCTTT
ATGAGCTGGCCCGCAAGGGAGAAGTGGTGGAGGCGGAGCCCCGGCCCGTA
CAGGTTAATCTTTTGAATTTAGTCCCAGCAGAAGAGGAGGCCGGGAAAGT
GATGCCTTGGCCGCACTTTGGATTAGAAATTGAGTGCCAGGGTGGAACGT
ACGTACGCTCGCTCATTTCAGACCTGGCTCGGACTGTAGATGCACGCGCA
CACATGACCGCTCTGGTGCGGACGAAGCAGGGACCTTTTTTCCTTAAGGA
TTGCTTGCCCGAGGAGACTTGGAAGACCGACGCCGAAGCCATTGTCCTTC
AACTTGTAAAGAAGTAA
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Synonyms
Publications