jgi.p|Nanoce1779_2|579065, mRNA_2097 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579065
Unique NamemRNA_2097
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1272
Alignment locationscaffold_4:807078..808349 -

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Properties
Property NameValue
TranscriptId579151
TrackFilteredModels2
ProteinId579065
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:807078..808349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579065gene_2097Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579065mRNA_2097-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2097CDS_2097Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2097 ID=mRNA_2097|Name=jgi.p|Nanoce1779_2|579065|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
ACAGGCACGAAATCCTCACCTTTTCTGAGCGTAGAGCGCTCCGGACGGAA
CGCGGTCCTGTCATTTTCCTCAAATGTCGTCGCTTCTAGGCACATGGCTA
GTGCAGTTGATGGTCTTGGCCACGCTGTTGCTACCCCTGCAGGCGTTCGT
CCCTTGTCGTCCCCCGTCGCATGGTCCCCTACAGCAGAAAAGGCAGTGGG
GTTGTGGCCACAGCAGCCTCGGCTCGCCGGAGGTCGTCGTGTCTGCGAGC
CTGGAGCCATCTACCACGTCGCGGCAAGACACGGTGAGGGAGCGGCTGGC
CCAGGAATGGGAACTAGACTGCTATTCCAGGCCCGTCATTGGAGAGGACG
GAAAAAAACTGTGGGAGCTGATGGTGTGTGATTCCCTGGGGGAGTTCCGG
GCCGTGGAAGCCATGCCTAGCAACATGGTCAACAGCCGGGAGCTGCGCAA
GCTAGTAGAGAAGATCATTGAGGACGCACCTGTCAAGCCCCGAGTCATCC
GCTTCTTCCGCAATGCCATGTTTAACATGGTCAGCCTCTCTCTTAAGGAT
TTGAAAGTCCGCGTGGTGCCCAGTCGATCTACGAACGCCCTCTTCAGCTG
GATCGACGAGCGTGAGGAGGAGGTCTACTCCAAAATGCCGGGCTATGACT
CCCAGATGCGAGACTCGAACGACGTCTTTGGTCTGCGAGAGCCCGAGATC
ATGCCGGATGGCCTTATGGGGGATAAATACGCCTTCATGTGCCTTCCTGC
CTCTCACTTTTTAGACGGTGAGGTGAATTACGACAACAGCGGCATCTCCC
GCCTCTTCGCGCTTGACAAGTCTATCCCCCGGGACAAGCAGGTGCAGGGC
ATTGTGATCTACAGCCCCCGTGCCAAGTCCATTGCCGCCTGGTTGGCGAG
CATGGAGCTGTGCTTTATCAAGGCCAACTTCAGCAAGCGCATTATGGTCC
TTGAGGTGGGCATCGATACCCAGTATTTGATGGCCACACTAAACGACGTC
AGACGCGTGGAGGCACAGATCTTCGAGAAGGGAAAGGAGGAGCTGGGTGG
TGTACATTTTTTGGCACTGCAAACGGACGAGAGTAGCGATGGTGTGGAGG
GCTTCTTCTTGTTGCGTGAGCGCAAACGTTAGAGGATAAATGACAAGGCG
GGAGAACGGGGCAGTAGCAGCGCATCGAGGAAGGGGGGAAAAGGAAATGT
AGCCATGGACTTCATGAAATGCATTTATGGAGAGTATGCACTAAGAGCAA
GGCAATAGAACTATATCAGTGT
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protein sequence of jgi.p|Nanoce1779_2|579065

>mRNA_2097-protein ID=mRNA_2097-protein|Name=jgi.p|Nanoce1779_2|579065|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSSLLGTWLVQLMVLATLLLPLQAFVPCRPPSHGPLQQKRQWGCGHSSLG
SPEVVVSASLEPSTTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELM
VCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMF
NMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSND
VFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKS
IPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQ
YLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRER
KR*
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mRNA from alignment at scaffold_4:807078..808349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2097 ID=mRNA_2097|Name=jgi.p|Nanoce1779_2|579065|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp|location=Sequence derived from alignment at scaffold_4:807078..808349- (Nannochloropsis oceanica)
ACAGGCACGAAATCCTCACCTTTTCTGAGCGTAGAGCGCTCCGGACGGAA
CGCGGTCCTGTCATTTTCCTCAAATGTCGTCGCTTCTAGGCACATGGCTA
GTGCAGTTGATGGTCTTGGCCACGCTGTTGCTACCCCTGCAGGCGTTCGT
CCCTTGTCGTCCCCCGTCGCATGGTCCCCTACAGCAGAAAAGGCAGTGGG
GTTGTGGCCACAGCAGCCTCGGCTCGCCGGAGGTCGTCGTGTCTGCGAGC
CTGGAGCCATCTACCACGTCGCGGCAAGACACGGTGAGGGAGCGGCTGGC
CCAGGAATGGGAACTAGACTGCTATTCCAGGCCCGTCATTGGAGAGGACG
GAAAAAAACTGTGGGAGCTGATGGTGTGTGATTCCCTGGGGGAGTTCCGG
GCCGTGGAAGCCATGCCTAGCAACATGGTCAACAGCCGGGAGCTGCGCAA
GCTAGTAGAGAAGATCATTGAGGACGCACCTGTCAAGCCCCGAGTCATCC
GCTTCTTCCGCAATGCCATGTTTAACATGGTCAGCCTCTCTCTTAAGGAT
TTGAAAGTCCGCGTGGTGCCCAGTCGATCTACGAACGCCCTCTTCAGCTG
GATCGACGAGCGTGAGGAGGAGGTCTACTCCAAAATGCCGGGCTATGACT
CCCAGATGCGAGACTCGAACGACGTCTTTGGTCTGCGAGAGCCCGAGATC
ATGCCGGATGGCCTTATGGGGGATAAATACGCCTTCATGTGCCTTCCTGC
CTCTCACTTTTTAGACGGTGAGGTGAATTACGACAACAGCGGCATCTCCC
GCCTCTTCGCGCTTGACAAGTCTATCCCCCGGGACAAGCAGGTGCAGGGC
ATTGTGATCTACAGCCCCCGTGCCAAGTCCATTGCCGCCTGGTTGGCGAG
CATGGAGCTGTGCTTTATCAAGGCCAACTTCAGCAAGCGCATTATGGTCC
TTGAGGTGGGCATCGATACCCAGTATTTGATGGCCACACTAAACGACGTC
AGACGCGTGGAGGCACAGATCTTCGAGAAGGGAAAGGAGGAGCTGGGTGG
TGTACATTTTTTGGCACTGCAAACGGACGAGAGTAGCGATGGTGTGGAGG
GCTTCTTCTTGTTGCGTGAGCGCAAACGTTAGAGGATAAATGACAAGGCG
GGAGAACGGGGCAGTAGCAGCGCATCGAGGAAGGGGGGAAAAGGAAATGT
AGCCATGGACTTCATGAAATGCATTTATGGAGAGTATGCACTAAGAGCAA
GGCAATAGAACTATATCAGTGT
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Coding sequence (CDS) from alignment at scaffold_4:807078..808349-

>mRNA_2097 ID=mRNA_2097|Name=jgi.p|Nanoce1779_2|579065|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_4:807078..808349- (Nannochloropsis oceanica)
ATGTCGTCGCTTCTAGGCACATGGCTAGTGCAGTTGATGGTCTTGGCCAC
GCTGTTGCTACCCCTGCAGGCGTTCGTCCCTTGTCGTCCCCCGTCGCATG
GTCCCCTACAGCAGAAAAGGCAGTGGGGTTGTGGCCACAGCAGCCTCGGC
TCGCCGGAGGTCGTCGTGTCTGCGAGCCTGGAGCCATCTACCACGTCGCG
GCAAGACACGGTGAGGGAGCGGCTGGCCCAGGAATGGGAACTAGACTGCT
ATTCCAGGCCCGTCATTGGAGAGGACGGAAAAAAACTGTGGGAGCTGATG
GTGTGTGATTCCCTGGGGGAGTTCCGGGCCGTGGAAGCCATGCCTAGCAA
CATGGTCAACAGCCGGGAGCTGCGCAAGCTAGTAGAGAAGATCATTGAGG
ACGCACCTGTCAAGCCCCGAGTCATCCGCTTCTTCCGCAATGCCATGTTT
AACATGGTCAGCCTCTCTCTTAAGGATTTGAAAGTCCGCGTGGTGCCCAG
TCGATCTACGAACGCCCTCTTCAGCTGGATCGACGAGCGTGAGGAGGAGG
TCTACTCCAAAATGCCGGGCTATGACTCCCAGATGCGAGACTCGAACGAC
GTCTTTGGTCTGCGAGAGCCCGAGATCATGCCGGATGGCCTTATGGGGGA
TAAATACGCCTTCATGTGCCTTCCTGCCTCTCACTTTTTAGACGGTGAGG
TGAATTACGACAACAGCGGCATCTCCCGCCTCTTCGCGCTTGACAAGTCT
ATCCCCCGGGACAAGCAGGTGCAGGGCATTGTGATCTACAGCCCCCGTGC
CAAGTCCATTGCCGCCTGGTTGGCGAGCATGGAGCTGTGCTTTATCAAGG
CCAACTTCAGCAAGCGCATTATGGTCCTTGAGGTGGGCATCGATACCCAG
TATTTGATGGCCACACTAAACGACGTCAGACGCGTGGAGGCACAGATCTT
CGAGAAGGGAAAGGAGGAGCTGGGTGGTGTACATTTTTTGGCACTGCAAA
CGGACGAGAGTAGCGATGGTGTGGAGGGCTTCTTCTTGTTGCGTGAGCGC
AAACGTTAG
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Synonyms
Publications