jgi.p|Nanoce1779_2|579061, mRNA_2096 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579061
Unique NamemRNA_2096
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length519
Alignment locationscaffold_4:806467..807077 +

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Properties
Property NameValue
TranscriptId579147
TrackFilteredModels2
ProteinId579061
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:806467..807077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579061gene_2096Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579061mRNA_2096-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2096CDS_2096Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2096 ID=mRNA_2096|Name=jgi.p|Nanoce1779_2|579061|organism=Nannochloropsis oceanica|type=mRNA|length=519bp
AATAGAAACACCCAATACGACACACAAACACACAGACATAACCCGAAGAA
GATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCCCTCCGCG
TCCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGCTAAGAGC
GTCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCACGGACTTT
TGGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGTGCTTTAA
ACATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATTCGCCGTG
GCCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGGTCGACGT
CCGCTCGGCAATGCCGCCCTTCATCATCGCCACACTATCAGTCCTCTTGC
TGGCGGCGGGCTATTCATATATTGTTGTGGAGGATGGCGGAAGCACGAAA
AGAAGGTAAAATGGAATAAACTAGGTGGTCATGAGTACTTGGCCAAGACG
CCAATAAATTAAAGATAAT
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protein sequence of jgi.p|Nanoce1779_2|579061

>mRNA_2096-protein ID=mRNA_2096-protein|Name=jgi.p|Nanoce1779_2|579061|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MKNLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTF
GIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDV
RSAMPPFIIATLSVLLLAAGYSYIVVEDGGSTKRR*
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mRNA from alignment at scaffold_4:806467..807077+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2096 ID=mRNA_2096|Name=jgi.p|Nanoce1779_2|579061|organism=Nannochloropsis oceanica|type=mRNA|length=611bp|location=Sequence derived from alignment at scaffold_4:806467..807077+ (Nannochloropsis oceanica)
AATAGAAACACCCAATACGACACACAAACACACAGACATAACCCGAAGAA
GATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCCCTCCGCG
TCCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGCTAAGAGC
GTCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCACGGACTTT
TGGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGTGCTTTAA
ACATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATTCGCCGTG
GCCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGGTCGACGT
CCGCTCGGCAATGCCGCCCTTCATCATCGCCAGTAAGTTACCAGAGGGAA
TCGTGTTTCATTCCTCGCACTTCTCCTTCCTGATACTGATATTCGTAATG
CCCCTCTTTGATTCGTGTCAACAGCACTATCAGTCCTCTTGCTGGCGGCG
GGCTATTCATATATTGTTGTGGAGGATGGCGGAAGCACGAAAAGAAGGTA
AAATGGAATAAACTAGGTGGTCATGAGTACTTGGCCAAGACGCCAATAAA
TTAAAGATAAT
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Coding sequence (CDS) from alignment at scaffold_4:806467..807077+

>mRNA_2096 ID=mRNA_2096|Name=jgi.p|Nanoce1779_2|579061|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_4:806467..807077+ (Nannochloropsis oceanica)
ATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCCCTCCGCGT
CCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGCTAAGAGCG
TCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCACGGACTTTT
GGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGTGCTTTAAA
CATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATTCGCCGTGG
CCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGGTCGACGTC
CGCTCGGCAATGCCGCCCTTCATCATCGCCACACTATCAGTCCTCTTGCT
GGCGGCGGGCTATTCATATATTGTTGTGGAGGATGGCGGAAGCACGAAAA
GAAGGTAAATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCC
CTCCGCGTCCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGC
TAAGAGCGTCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCAC
GGACTTTTGGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGT
GCTTTAAACATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATT
CGCCGTGGCCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGG
TCGACGTCCGCTCGGCAATGCCGCCCTTCATCATCGCCACACTATCAGTC
CTCTTGCTGGCGGCGGGCTATTCATATATTGTTGTGGAGGATGGCGGAAG
CACGAAAAGAAGGTAA
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Synonyms
Publications