jgi.p|Nanoce1779_2|293765, mRNA_2093 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|293765
Unique NamemRNA_2093
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2015
Alignment locationscaffold_4:787743..789757 -

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Properties
Property NameValue
TranscriptId293851
TrackFilteredModels2
ProteinId293765
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:787743..789757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|293765gene_2093Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|293765mRNA_2093-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2093CDS_2093Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2093 ID=mRNA_2093|Name=jgi.p|Nanoce1779_2|293765|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp
TATGCTTCAAAATCGCATAGCAAGGTTGTACGAGTATCTGCCCAGGGCGC
ACGCATGTGACTACTGATCAACTTGTGTCTGGTTGAAAACTATGACTTCA
TGTGTCCGAGCGAACATATGTAGAGATAATTTTGTTCAAGCTTGTTGAGT
CTGATCTTGCGGTCGGTATATAAAAAAATGTAAAGTCATTCATTTACATA
TAAAGGTACAATTGCAAGACTAACCACCCCACAACCATTTATGCATTATT
AAACGATAGCTGGCGCGAGGGATGTTGATCTTGCAGCAGTTTAGTCGAAA
ATCCTGGAAGGAAAAATTGGGTAGCAGCAGTGCTTTGTCGGGTATTGATG
CTAACTATAGCAGATCGGGCGGTGGTGCCACGGCAGGGCTGAAAACAGAC
AAGGGTAGGGCTATGGCTGCCGTCGATGCAGCCAGACGTAATGTGTTTTC
CTCCACCAAAAGCGTTGTATCAGCAGTAGCGGGCACGCTTAAAATTGTCG
ACGCTCGCAAGGAAATGCTGGAAACTTGGGGTTTTGACACGAATGACTCT
GTCATCTTGACGGAAATCATTACAAAGGAGCCGAAAGAGGAGAGGCTAAT
CGTCATCAGCACTGAGCGCGTCATCTGTGCAGATTGCTTTTACAAAGGGG
GCTCTGCGCCCGAGGTGCACCTTCTGTGGCAGGCCCCGCTCAAGGCCATC
CGAGATGTGGCCCTGAAGAGTATGCCATTAGTTTTGACGTTCCATATCGA
TCGGCAAGCAGTCAAGACTGCGGCTCTGAGTCCGGAACACTCTGGCGTAG
ATAACTTGGGCGCTGGCGATGGCGAGGTCAAATCGCACGCACAGCCCCAA
CCTACCCGACCCTCCCACTGCCAGATCGTGCAGAAACGCCTTCTGGGCGA
TTGGCAGCACAATAATGTGGCTTTTATGCGCGTCTACAACATCGTGAAAT
GCCTCCTAGGCCGCTTGGATGAGGTGGACGTGAACGCGGGGTATGGGTTT
GGCGTGCATTGCAACAATGGGGGCTTCCAGTTTGGAGTGTGGGAGTTTGC
ACCTTTGGAGCCGCTCCGACCGTTCCTTACTTCTCCTGTTCCTCACACGT
ACAGCTCAGAAATCAGAGCACCCGAGGGATTATCTGTGGGAGCGATGGGA
CCGGTGGAAACTGGCAACGACGCCAAAGATGAATGGCCCCTTTTTCACGT
GCTTGAACAAACATCTTGGATCGGAGTCAACAGGCTGACGGAGGGGGCAA
TGCAGCAGGACATTTTCCTCTCTAAACCGAAACAAAAAATTGGGCATCCC
GTACAGACCGACCCGACGCTGCTACCGTCACAACCAGTGGGTTCCACAAC
CACTGGCAGTAGCAGCAGTCGCAGCAGCAGCGGCACCAGCACGAGCAGTT
GGAAGGGGGCCAGTGCGCCATTTCCCCGAAGTGTGCCGTCTATATTTATT
CGTGATGGTGGCACCGATGCTGATGCCAGTAGCCGAACCGACACCGCCGC
TGCCAGAAACTCGAGCACCGACAGTAGCAGGGTGGATGAGGGTGAATCTG
CCTCTAATCAGCTCCTGGGGAAGATTGATATGTTGGAAGCCCGCCTTTTC
GATCTGGAACACGACAGTGTGCTCTTTTCTCCAGGTGGCGCTTGGAGAAC
AAGATGATCACGCGTAGATGGCAGGATTGATCTGAAATGTGTGGGAAACG
CAACAATGGTCACACATGCATATAATTTATGTGGCATCAATCAGTGTTTA
TATGTATATAACAAATAAATATATCTCGCAAACAATGTTTGCTATCTGGT
TTCATGTCTGCTGCCAATTTGAATTTTCCTCTTTGAATGCGTGTCGGACC
GCCTTATTTATCCACCAGGTTAATTATGAACTCAATCTTTGCGAGGTACC
GGAGGGTTGCGAACGGGCTAATTAATCTACACAGCAGCCGGGGACGGGCG
TGCACCCTTTGGCAAGAGTGAGGAACGAACAGTTTGTCGACCCTATTATT
TCCATTTGAATCCCA
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protein sequence of jgi.p|Nanoce1779_2|293765

>mRNA_2093-protein ID=mRNA_2093-protein|Name=jgi.p|Nanoce1779_2|293765|organism=Nannochloropsis oceanica|type=polypeptide|length=462bp
MLILQQFSRKSWKEKLGSSSALSGIDANYSRSGGGATAGLKTDKGRAMAA
VDAARRNVFSSTKSVVSAVAGTLKIVDARKEMLETWGFDTNDSVILTEII
TKEPKEERLIVISTERVICADCFYKGGSAPEVHLLWQAPLKAIRDVALKS
MPLVLTFHIDRQAVKTAALSPEHSGVDNLGAGDGEVKSHAQPQPTRPSHC
QIVQKRLLGDWQHNNVAFMRVYNIVKCLLGRLDEVDVNAGYGFGVHCNNG
GFQFGVWEFAPLEPLRPFLTSPVPHTYSSEIRAPEGLSVGAMGPVETGND
AKDEWPLFHVLEQTSWIGVNRLTEGAMQQDIFLSKPKQKIGHPVQTDPTL
LPSQPVGSTTTGSSSSRSSSGTSTSSWKGASAPFPRSVPSIFIRDGGTDA
DASSRTDTAAARNSSTDSSRVDEGESASNQLLGKIDMLEARLFDLEHDSV
LFSPGGAWRTR*
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mRNA from alignment at scaffold_4:787743..789757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2093 ID=mRNA_2093|Name=jgi.p|Nanoce1779_2|293765|organism=Nannochloropsis oceanica|type=mRNA|length=2015bp|location=Sequence derived from alignment at scaffold_4:787743..789757- (Nannochloropsis oceanica)
TATGCTTCAAAATCGCATAGCAAGGTTGTACGAGTATCTGCCCAGGGCGC
ACGCATGTGACTACTGATCAACTTGTGTCTGGTTGAAAACTATGACTTCA
TGTGTCCGAGCGAACATATGTAGAGATAATTTTGTTCAAGCTTGTTGAGT
CTGATCTTGCGGTCGGTATATAAAAAAATGTAAAGTCATTCATTTACATA
TAAAGGTACAATTGCAAGACTAACCACCCCACAACCATTTATGCATTATT
AAACGATAGCTGGCGCGAGGGATGTTGATCTTGCAGCAGTTTAGTCGAAA
ATCCTGGAAGGAAAAATTGGGTAGCAGCAGTGCTTTGTCGGGTATTGATG
CTAACTATAGCAGATCGGGCGGTGGTGCCACGGCAGGGCTGAAAACAGAC
AAGGGTAGGGCTATGGCTGCCGTCGATGCAGCCAGACGTAATGTGTTTTC
CTCCACCAAAAGCGTTGTATCAGCAGTAGCGGGCACGCTTAAAATTGTCG
ACGCTCGCAAGGAAATGCTGGAAACTTGGGGTTTTGACACGAATGACTCT
GTCATCTTGACGGAAATCATTACAAAGGAGCCGAAAGAGGAGAGGCTAAT
CGTCATCAGCACTGAGCGCGTCATCTGTGCAGATTGCTTTTACAAAGGGG
GCTCTGCGCCCGAGGTGCACCTTCTGTGGCAGGCCCCGCTCAAGGCCATC
CGAGATGTGGCCCTGAAGAGTATGCCATTAGTTTTGACGTTCCATATCGA
TCGGCAAGCAGTCAAGACTGCGGCTCTGAGTCCGGAACACTCTGGCGTAG
ATAACTTGGGCGCTGGCGATGGCGAGGTCAAATCGCACGCACAGCCCCAA
CCTACCCGACCCTCCCACTGCCAGATCGTGCAGAAACGCCTTCTGGGCGA
TTGGCAGCACAATAATGTGGCTTTTATGCGCGTCTACAACATCGTGAAAT
GCCTCCTAGGCCGCTTGGATGAGGTGGACGTGAACGCGGGGTATGGGTTT
GGCGTGCATTGCAACAATGGGGGCTTCCAGTTTGGAGTGTGGGAGTTTGC
ACCTTTGGAGCCGCTCCGACCGTTCCTTACTTCTCCTGTTCCTCACACGT
ACAGCTCAGAAATCAGAGCACCCGAGGGATTATCTGTGGGAGCGATGGGA
CCGGTGGAAACTGGCAACGACGCCAAAGATGAATGGCCCCTTTTTCACGT
GCTTGAACAAACATCTTGGATCGGAGTCAACAGGCTGACGGAGGGGGCAA
TGCAGCAGGACATTTTCCTCTCTAAACCGAAACAAAAAATTGGGCATCCC
GTACAGACCGACCCGACGCTGCTACCGTCACAACCAGTGGGTTCCACAAC
CACTGGCAGTAGCAGCAGTCGCAGCAGCAGCGGCACCAGCACGAGCAGTT
GGAAGGGGGCCAGTGCGCCATTTCCCCGAAGTGTGCCGTCTATATTTATT
CGTGATGGTGGCACCGATGCTGATGCCAGTAGCCGAACCGACACCGCCGC
TGCCAGAAACTCGAGCACCGACAGTAGCAGGGTGGATGAGGGTGAATCTG
CCTCTAATCAGCTCCTGGGGAAGATTGATATGTTGGAAGCCCGCCTTTTC
GATCTGGAACACGACAGTGTGCTCTTTTCTCCAGGTGGCGCTTGGAGAAC
AAGATGATCACGCGTAGATGGCAGGATTGATCTGAAATGTGTGGGAAACG
CAACAATGGTCACACATGCATATAATTTATGTGGCATCAATCAGTGTTTA
TATGTATATAACAAATAAATATATCTCGCAAACAATGTTTGCTATCTGGT
TTCATGTCTGCTGCCAATTTGAATTTTCCTCTTTGAATGCGTGTCGGACC
GCCTTATTTATCCACCAGGTTAATTATGAACTCAATCTTTGCGAGGTACC
GGAGGGTTGCGAACGGGCTAATTAATCTACACAGCAGCCGGGGACGGGCG
TGCACCCTTTGGCAAGAGTGAGGAACGAACAGTTTGTCGACCCTATTATT
TCCATTTGAATCCCA
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Coding sequence (CDS) from alignment at scaffold_4:787743..789757-

>mRNA_2093 ID=mRNA_2093|Name=jgi.p|Nanoce1779_2|293765|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_4:787743..789757- (Nannochloropsis oceanica)
ATGTTGATCTTGCAGCAGTTTAGTCGAAAATCCTGGAAGGAAAAATTGGG
TAGCAGCAGTGCTTTGTCGGGTATTGATGCTAACTATAGCAGATCGGGCG
GTGGTGCCACGGCAGGGCTGAAAACAGACAAGGGTAGGGCTATGGCTGCC
GTCGATGCAGCCAGACGTAATGTGTTTTCCTCCACCAAAAGCGTTGTATC
AGCAGTAGCGGGCACGCTTAAAATTGTCGACGCTCGCAAGGAAATGCTGG
AAACTTGGGGTTTTGACACGAATGACTCTGTCATCTTGACGGAAATCATT
ACAAAGGAGCCGAAAGAGGAGAGGCTAATCGTCATCAGCACTGAGCGCGT
CATCTGTGCAGATTGCTTTTACAAAGGGGGCTCTGCGCCCGAGGTGCACC
TTCTGTGGCAGGCCCCGCTCAAGGCCATCCGAGATGTGGCCCTGAAGAGT
ATGCCATTAGTTTTGACGTTCCATATCGATCGGCAAGCAGTCAAGACTGC
GGCTCTGAGTCCGGAACACTCTGGCGTAGATAACTTGGGCGCTGGCGATG
GCGAGGTCAAATCGCACGCACAGCCCCAACCTACCCGACCCTCCCACTGC
CAGATCGTGCAGAAACGCCTTCTGGGCGATTGGCAGCACAATAATGTGGC
TTTTATGCGCGTCTACAACATCGTGAAATGCCTCCTAGGCCGCTTGGATG
AGGTGGACGTGAACGCGGGGTATGGGTTTGGCGTGCATTGCAACAATGGG
GGCTTCCAGTTTGGAGTGTGGGAGTTTGCACCTTTGGAGCCGCTCCGACC
GTTCCTTACTTCTCCTGTTCCTCACACGTACAGCTCAGAAATCAGAGCAC
CCGAGGGATTATCTGTGGGAGCGATGGGACCGGTGGAAACTGGCAACGAC
GCCAAAGATGAATGGCCCCTTTTTCACGTGCTTGAACAAACATCTTGGAT
CGGAGTCAACAGGCTGACGGAGGGGGCAATGCAGCAGGACATTTTCCTCT
CTAAACCGAAACAAAAAATTGGGCATCCCGTACAGACCGACCCGACGCTG
CTACCGTCACAACCAGTGGGTTCCACAACCACTGGCAGTAGCAGCAGTCG
CAGCAGCAGCGGCACCAGCACGAGCAGTTGGAAGGGGGCCAGTGCGCCAT
TTCCCCGAAGTGTGCCGTCTATATTTATTCGTGATGGTGGCACCGATGCT
GATGCCAGTAGCCGAACCGACACCGCCGCTGCCAGAAACTCGAGCACCGA
CAGTAGCAGGGTGGATGAGGGTGAATCTGCCTCTAATCAGCTCCTGGGGA
AGATTGATATGTTGGAAGCCCGCCTTTTCGATCTGGAACACGACAGTGTG
CTCTTTTCTCCAGGTGGCGCTTGGAGAACAAGATGA
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Synonyms
Publications