jgi.p|Nanoce1779_2|622475, mRNA_209 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622475
Unique Name	mRNA_209
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1107
Alignment location	scaffold_3:527199..528714 +

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Properties


Property Name	Value
TranscriptId	622561
Track	FilteredModels2
ProteinId	622475

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:527199..528714 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622475	gene_209	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622475	mRNA_209-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_209	CDS_209	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:527199..528714+
coding sequence from alignment at scaffold_3:527199..528714+

mRNA sequence

>mRNA_209 ID=mRNA_209|Name=jgi.p|Nanoce1779_2|622475|organism=Nannochloropsis oceanica|type=mRNA|length=1107bp
ATGGAGACCAAGGTGCGGGTCGGGGTGCGGGTGCGTCCCTTGCTACCCAA
CGAGATGGCAGTGGGCTCGGAGATGGTGATGAAGTACCCTGGGGACAACG
GCAAGCAAATCGGTATGGGGGAACGTGCCTTCACCTACGACCATGTCTTT
CGTCCTGAGGTTGAACAGAACGCTTTGTACGGCATGACGGCCAAGCCCAT
GCTCAAGCCCTTCTTGGACGGATATAACGTGACCATCATCGCATACGGTC
AAACTGGATCTGGCAAGACGTACACGATGGGATCGGAGGCCGTCATGGAG
GGCAACGGCGCGGTCGGGAGTGGGGATGCATCGCCGGTGGGTTTGATCCC
TCGGTTTGTAGACGACCTTTTCACGCATTTGGCCGAGCGACAGCAGCGCC
TGACATCGCAGCAGGCGGGCAACACAGTGGTGTCCGCCTCGTTTCTAGAG
ATTTATGGCGAAGACATGTCAACGCGGGGGGTGATAGTCTCAGGCTTAAA
GATGGTCGCGGTTAGCACGCGCACGGAGGCTTTGCAAGTTTTGCGAAAGG
GTATCATGAACCGCACCACGGCTGCGACGTTGATGAATGTGGTTTCGAGT
CGCTCTCACGCTGTCTTCACCGTCACTTTGCAGCAGACTCTTAGTACGGG
GAGTAGCAGTAGCAGTAGCAGTGGCAGTGGAGGCGGCTGCGACGGCAGCG
GTGAAGAAGTGAAAAGTATTTTAGGTGAGGCGGAAGGGCAGGTGGTTGTG
TCAAAGCTGACATTTGTGGATCTGGCGGGGAGTGAGCGGCTGAAGCGGAC
GGGGGCCGAAGGGGAGAGGCGACGGGAGGGGATCCAGATCAACGTGGGTT
TGTTGGCCTTGGGCAGTGTCATCAATGCTTTGGCTGATGAAGAGCGCTTG
GTCAAGGGTAAGAAATCGGTCCACGTCCCCTACCGTCAATCGAAGCTCAC
CCGGCTCCTTCAAGACGCGTTAGGTGGGAATAGCCAGACCTTGTTCCTTG
CGTGCGTCTCCCCCGCAGACATCAACGCTAGCGAGACCCTCTCCACTCTC
TACTACGCCAACCGTGCCCGCAACATTCGAAATAAACCATCCCCGACTCT
GATTTGA

protein sequence of jgi.p|Nanoce1779_2|622475

>mRNA_209-protein ID=mRNA_209-protein|Name=jgi.p|Nanoce1779_2|622475|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
METKVRVGVRVRPLLPNEMAVGSEMVMKYPGDNGKQIGMGERAFTYDHVF
RPEVEQNALYGMTAKPMLKPFLDGYNVTIIAYGQTGSGKTYTMGSEAVME
GNGAVGSGDASPVGLIPRFVDDLFTHLAERQQRLTSQQAGNTVVSASFLE
IYGEDMSTRGVIVSGLKMVAVSTRTEALQVLRKGIMNRTTAATLMNVVSS
RSHAVFTVTLQQTLSTGSSSSSSSGSGGGCDGSGEEVKSILGEAEGQVVV
SKLTFVDLAGSERLKRTGAEGERRREGIQINVGLLALGSVINALADEERL
VKGKKSVHVPYRQSKLTRLLQDALGGNSQTLFLACVSPADINASETLSTL
YYANRARNIRNKPSPTLI*

mRNA from alignment at scaffold_3:527199..528714+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_209 ID=mRNA_209|Name=jgi.p|Nanoce1779_2|622475|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp|location=Sequence derived from alignment at scaffold_3:527199..528714+ (Nannochloropsis oceanica)
ATGGAGACCAAGGTGCGGGTCGGGGTGCGGGTGCGTCCCTTGCTACCCAA
CGAGATGGCAGTGGGCTCGGAGATGGTGATGAAGTACCCTGGGGACAACG
GCAAGCAAATCGGTATGGGGGAACGTGCCTTCACCTACGACCATGTCTTT
CGTCCTGAGGTTGAACAGAACGCTTTGTACGGCATGACGGCCAAGCCCAT
GCTCAAGCCCTTCTTGGACGGATATAACGTGACCATCATCGCATGTACGT
CATTACCCTCTTTTCTCTCCACCTCCCTCTTTCCCTCTTTCCCTCGTCCG
AATGCCCATGCTTGTGCTTCCACCCGGCAGCCACAAAAGCACCCCACTTA
CTCTTACTCTTGACTTCGTCCCTCTCTCCCTCAATCCATCCAACACCACA
CCTTCTCTGTCTAGACGGTCAAACTGGATCTGGCAAGACGTACACGATGG
GATCGGAGGCCGTCATGGAGGGCAACGGCGCGGTCGGGAGTGGGGATGCA
TCGCCGGTGGGTTTGATCCCTCGGTTTGTAGACGACCTTTTCACGCATTT
GGCCGAGCGACAGCAGCGCCTGACATCGCAGCAGGCGGGCAACACAGTGG
TGTCCGCCTCGTTTCTAGAGATTTATGGCGAAGACGTATATGACTTACTG
GACGACTCGGCCGATGGACGAGGCCGGCCCTCTCTACCAATTCGGGAAGA
TGTCAACGCGGGGGGTGATAGTCTCAGGCTTAAAGATGGTCGCGGTTAGC
ACGCGCACGGAGGCTTTGCAAGTTTTGCGAAAGGGTATCATGAACCGCAC
CACGGCTGCGACGTTGATGAATGTGGTTTCGAGTCGCTCTCACGCTGTCT
TCACCGTCACTTTGCAGCAGACTCTTAGTACGGGGAGTAGCAGTAGCAGT
AGCAGTGGCAGTGGAGGCGGCTGCGACGGCAGCGGTGAAGAAGTGAAAAG
TATTTTAGGTGAGGCGGAAGGGCAGGTGGTTGTGTCAAAGCTGACATTTG
TGGATCTGGCGGGGAGTGAGCGGCTGAAGCGGACGGGGGCCGAAGGGGAG
AGGCGACGGGAGGGGATCCAGATCAACGTGGGTTTGTTGGCCTTGGGCAG
TGTCATCAATGCTTTGGCTGATGAAGAGCGCTTGGTCAAGGGTAAGAAAT
CGGTCCACGTCCCCTACCGTCAATCGAAGCTCACCCGGCTCCTTCAAGAC
GCGTTAGGTGGGAATAGCCAGACCTTGTTCCTTGCGTGCGTCTCCCCCGC
AGACATCAACGCTAGCGAGACCCTCTCCACTCTCTACTACGCCAACCGTG
CCCGCAACATTCGAAATAAACCAGTCAAAAACACCGACTCCGTTAAGGAG
GAACTCCGATGCCTTCGGCAGACCGCTCACTTCCTCAAGGCCGAGGTGGT
GCGGCAGAAGTTCCTACAGGCTCCCCCATCGGTGCCGGACAAGATAGAGG
ACGCGGATGCGGTCCCCGTTGCCTCGTCTCTTGCCTCTGCTCCCCAAGTC
CCCGACTCTGATTTGA

Coding sequence (CDS) from alignment at scaffold_3:527199..528714+

>mRNA_209 ID=mRNA_209|Name=jgi.p|Nanoce1779_2|622475|organism=Nannochloropsis oceanica|type=CDS|length=4428bp|location=Sequence derived from alignment at scaffold_3:527199..528714+ (Nannochloropsis oceanica)
ATGGAGACCAAGGTGCGGGTCGGGGTGCGGGTGCGTCCCTTGCTACCCAA
CGAGATGGCAGTGGGCTCGGAGATGGTGATGAAGTACCCTGGGGACAACG
GCAAGCAAATCGGTATGGGGGAACGTGCCTTCACCTACGACCATGTCTTT
CGTCCTGAGGTTGAACAGAACGCTTTGTACGGCATGACGGCCAAGCCCAT
GCTCAAGCCCTTCTTGGACGGATATAACGTGACCATCATCGCATACGGTC
AAACTGGATCTGGCAAGACGTACACGATGGGATCGGAGGCCGTCATGGAG
GGCAACGGCGCGGTCGGGAGTGGGGATGCATCGCCGGTGGGTTTGATCCC
TCGGTTTGTAGACGACCTTTTCACGCATTTGGCCGAGCGACAGCAGCGCC
TGACATCGCAGCAGGCGGGCAACACAGTGGTGTCCGCCTCGTTTCTAGAG
ATTTATGGCGAAGACATGTCAACGCGGGGGGTGATAGTCTCAGGCTTAAA
GATGGTCGCGGTTAGCACGCGCACGGAGGCTTTGCAAGTTTTGCGAAAGG
GTATCATGAACCGCACCACGGCTGCGACGTTGATGAATGTGGTTTCGAGT
CGCTCTCACGCTGTCTTCACCGTCACTTTGCAGCAGACTCTTAGTACGGG
GAGTAGCAGTAGCAGTAGCAGTGGCAGTGGAGGCGGCTGCGACGGCAGCG
GTGAAGAAGTGAAAAGTATTTTAGGTGAGGCGGAAGGGCAGGTGGTTGTG
TCAAAGCTGACATTTGTGGATCTGGCGGGGAGTGAGCGGCTGAAGCGGAC
GGGGGCCGAAGGGGAGAGGCGACGGGAGGGGATCCAGATCAACGTGGGTT
TGTTGGCCTTGGGCAGTGTCATCAATGCTTTGGCTGATGAAGAGCGCTTG
GTCAAGGGTAAGAAATCGGTCCACGTCCCCTACCGTCAATCGAAGCTCAC
CCGGCTCCTTCAAGACGCGTTAGGTGGGAATAGCCAGACCTTGTTCCTTG
CGTGCGTCTCCCCCGCAGACATCAACGCTAGCGAGACCCTCTCCACTCTC
TACTACGCCAACCGTGCCCGCAACATTCGAAATAAACCATCCCCGACTCT
GATTTGAATGGAGACCAAGGTGCGGGTCGGGGTGCGGGTGCGTCCCTTGC
TACCCAACGAGATGGCAGTGGGCTCGGAGATGGTGATGAAGTACCCTGGG
GACAACGGCAAGCAAATCGGTATGGGGGAACGTGCCTTCACCTACGACCA
TGTCTTTCGTCCTGAGGTTGAACAGAACGCTTTGTACGGCATGACGGCCA
AGCCCATGCTCAAGCCCTTCTTGGACGGATATAACGTGACCATCATCGCA
TACGGTCAAACTGGATCTGGCAAGACGTACACGATGGGATCGGAGGCCGT
CATGGAGGGCAACGGCGCGGTCGGGAGTGGGGATGCATCGCCGGTGGGTT
TGATCCCTCGGTTTGTAGACGACCTTTTCACGCATTTGGCCGAGCGACAG
CAGCGCCTGACATCGCAGCAGGCGGGCAACACAGTGGTGTCCGCCTCGTT
TCTAGAGATTTATGGCGAAGACATGTCAACGCGGGGGGTGATAGTCTCAG
GCTTAAAGATGGTCGCGGTTAGCACGCGCACGGAGGCTTTGCAAGTTTTG
CGAAAGGGTATCATGAACCGCACCACGGCTGCGACGTTGATGAATGTGGT
TTCGAGTCGCTCTCACGCTGTCTTCACCGTCACTTTGCAGCAGACTCTTA
GTACGGGGAGTAGCAGTAGCAGTAGCAGTGGCAGTGGAGGCGGCTGCGAC
GGCAGCGGTGAAGAAGTGAAAAGTATTTTAGGTGAGGCGGAAGGGCAGGT
GGTTGTGTCAAAGCTGACATTTGTGGATCTGGCGGGGAGTGAGCGGCTGA
AGCGGACGGGGGCCGAAGGGGAGAGGCGACGGGAGGGGATCCAGATCAAC
GTGGGTTTGTTGGCCTTGGGCAGTGTCATCAATGCTTTGGCTGATGAAGA
GCGCTTGGTCAAGGGTAAGAAATCGGTCCACGTCCCCTACCGTCAATCGA
AGCTCACCCGGCTCCTTCAAGACGCGTTAGGTGGGAATAGCCAGACCTTG
TTCCTTGCGTGCGTCTCCCCCGCAGACATCAACGCTAGCGAGACCCTCTC
CACTCTCTACTACGCCAACCGTGCCCGCAACATTCGAAATAAACCATCCC
CGACTCTGATTTGAATGGAGACCAAGGTGCGGGTCGGGGTGCGGGTGCGT
CCCTTGCTACCCAACGAGATGGCAGTGGGCTCGGAGATGGTGATGAAGTA
CCCTGGGGACAACGGCAAGCAAATCGGTATGGGGGAACGTGCCTTCACCT
ACGACCATGTCTTTCGTCCTGAGGTTGAACAGAACGCTTTGTACGGCATG
ACGGCCAAGCCCATGCTCAAGCCCTTCTTGGACGGATATAACGTGACCAT
CATCGCATACGGTCAAACTGGATCTGGCAAGACGTACACGATGGGATCGG
AGGCCGTCATGGAGGGCAACGGCGCGGTCGGGAGTGGGGATGCATCGCCG
GTGGGTTTGATCCCTCGGTTTGTAGACGACCTTTTCACGCATTTGGCCGA
GCGACAGCAGCGCCTGACATCGCAGCAGGCGGGCAACACAGTGGTGTCCG
CCTCGTTTCTAGAGATTTATGGCGAAGACATGTCAACGCGGGGGGTGATA
GTCTCAGGCTTAAAGATGGTCGCGGTTAGCACGCGCACGGAGGCTTTGCA
AGTTTTGCGAAAGGGTATCATGAACCGCACCACGGCTGCGACGTTGATGA
ATGTGGTTTCGAGTCGCTCTCACGCTGTCTTCACCGTCACTTTGCAGCAG
ACTCTTAGTACGGGGAGTAGCAGTAGCAGTAGCAGTGGCAGTGGAGGCGG
CTGCGACGGCAGCGGTGAAGAAGTGAAAAGTATTTTAGGTGAGGCGGAAG
GGCAGGTGGTTGTGTCAAAGCTGACATTTGTGGATCTGGCGGGGAGTGAG
CGGCTGAAGCGGACGGGGGCCGAAGGGGAGAGGCGACGGGAGGGGATCCA
GATCAACGTGGGTTTGTTGGCCTTGGGCAGTGTCATCAATGCTTTGGCTG
ATGAAGAGCGCTTGGTCAAGGGTAAGAAATCGGTCCACGTCCCCTACCGT
CAATCGAAGCTCACCCGGCTCCTTCAAGACGCGTTAGGTGGGAATAGCCA
GACCTTGTTCCTTGCGTGCGTCTCCCCCGCAGACATCAACGCTAGCGAGA
CCCTCTCCACTCTCTACTACGCCAACCGTGCCCGCAACATTCGAAATAAA
CCATCCCCGACTCTGATTTGAATGGAGACCAAGGTGCGGGTCGGGGTGCG
GGTGCGTCCCTTGCTACCCAACGAGATGGCAGTGGGCTCGGAGATGGTGA
TGAAGTACCCTGGGGACAACGGCAAGCAAATCGGTATGGGGGAACGTGCC
TTCACCTACGACCATGTCTTTCGTCCTGAGGTTGAACAGAACGCTTTGTA
CGGCATGACGGCCAAGCCCATGCTCAAGCCCTTCTTGGACGGATATAACG
TGACCATCATCGCATACGGTCAAACTGGATCTGGCAAGACGTACACGATG
GGATCGGAGGCCGTCATGGAGGGCAACGGCGCGGTCGGGAGTGGGGATGC
ATCGCCGGTGGGTTTGATCCCTCGGTTTGTAGACGACCTTTTCACGCATT
TGGCCGAGCGACAGCAGCGCCTGACATCGCAGCAGGCGGGCAACACAGTG
GTGTCCGCCTCGTTTCTAGAGATTTATGGCGAAGACATGTCAACGCGGGG
GGTGATAGTCTCAGGCTTAAAGATGGTCGCGGTTAGCACGCGCACGGAGG
CTTTGCAAGTTTTGCGAAAGGGTATCATGAACCGCACCACGGCTGCGACG
TTGATGAATGTGGTTTCGAGTCGCTCTCACGCTGTCTTCACCGTCACTTT
GCAGCAGACTCTTAGTACGGGGAGTAGCAGTAGCAGTAGCAGTGGCAGTG
GAGGCGGCTGCGACGGCAGCGGTGAAGAAGTGAAAAGTATTTTAGGTGAG
GCGGAAGGGCAGGTGGTTGTGTCAAAGCTGACATTTGTGGATCTGGCGGG
GAGTGAGCGGCTGAAGCGGACGGGGGCCGAAGGGGAGAGGCGACGGGAGG
GGATCCAGATCAACGTGGGTTTGTTGGCCTTGGGCAGTGTCATCAATGCT
TTGGCTGATGAAGAGCGCTTGGTCAAGGGTAAGAAATCGGTCCACGTCCC
CTACCGTCAATCGAAGCTCACCCGGCTCCTTCAAGACGCGTTAGGTGGGA
ATAGCCAGACCTTGTTCCTTGCGTGCGTCTCCCCCGCAGACATCAACGCT
AGCGAGACCCTCTCCACTCTCTACTACGCCAACCGTGCCCGCAACATTCG
AAATAAACCATCCCCGACTCTGATTTGA

Synonyms

Publications