jgi.p|Nanoce1779_2|579024, mRNA_2089 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579024
Unique Name	mRNA_2089
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	936
Alignment location	scaffold_4:774070..775710 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579110
Track	FilteredModels2
ProteinId	579024

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:774070..775710 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579024	gene_2089	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579024	mRNA_2089-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2089	CDS_2089	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:774070..775710+
coding sequence from alignment at scaffold_4:774070..775710+

mRNA sequence

>mRNA_2089 ID=mRNA_2089|Name=jgi.p|Nanoce1779_2|579024|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
CAGTCCCACACCCACACGTTGTGCATAGGGTAGCAACAGGCAGGACCACA
AGCAGTAGCATAGCAGTAGCGTGACGACAAAGCTGTGGCAGCCCAAAAAA
TAATAATACTGCACGCCAGCGTAGCTGCAAGCACAGCTGTCATGGAGGAC
GCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCGCGCGATCAA
CAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCACTTGCAGTC
CCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTAGCAGAAATG
GACATGGATCTTGCCGAAGCCGAAGGACAGGTCAAAGCCTTGGAGGTCGA
GCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATCGAGACAAGATTT
CCCAGTTTCGCAACGACTTGTGCGCTCTCCGGCGGAGCTTCGGAAGTGCC
AAAGCCATTGCTGAGAAGCGCATCCTAATCCAGCAAGCACCGGGCAGCGG
CAAGCTGAAGGGTGCCACGGAGCGTCTGATGCGGTCCACGGAGCAGCTAA
ACGATGCCAAACGGATGGTAGGCGAGACAGAGGATGTTGGCGATGGCATC
ATAAATCAAATGGAGTCGCAGAGGGAACAACTGGTGCGGGCTTCCGAAAA
GGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAGACAAGTGATGAACA
ACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTCTCATCCTTATAATT
GTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAACTATGGCGTGTTGGC
AAGGTACCGGAAGAATGATTGAAGGGGCTTTTGGGACCCCCCGGGTGGAA
GCAGCAAAGAAGAGTACATAGTGAAGAGGCAGAAAAAGAAGCCGAGATGT
TGCGCGTCAAAAGTATCAATGTCGATATGTAATGAA

protein sequence of jgi.p|Nanoce1779_2|579024

>mRNA_2089-protein ID=mRNA_2089-protein|Name=jgi.p|Nanoce1779_2|579024|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MEDAHKHMEEEYYRLSRAINKGIDELGSKYSSVTCSPTPAMAPSTLSRIL
AEMDMDLAEAEGQVKALEVELRCMNAVDKKIYRDKISQFRNDLCALRRSF
GSAKAIAEKRILIQQAPGSGKLKGATERLMRSTEQLNDAKRMVGETEDVG
DGIINQMESQREQLVRASEKVQETNWFTRSARQVMNNMHLRAIRHKACLI
LIIVFQFILIGIVFNYGVLARYRKND*

mRNA from alignment at scaffold_4:774070..775710+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2089 ID=mRNA_2089|Name=jgi.p|Nanoce1779_2|579024|organism=Nannochloropsis oceanica|type=mRNA|length=1641bp|location=Sequence derived from alignment at scaffold_4:774070..775710+ (Nannochloropsis oceanica)
CAGTCCCACACCCACACGTTGTGCATAGGGTAGCAACAGGCAGGACCACA
AGCAGTAGCATAGCAGTAGCGTGACGACAAAGCTGTGGCAGCCCAAAAAA
TAATAATACTGCACGCCAGCGTAGCTGCAAGCACAGCTGTCATGGAGGAC
GCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCGCGCGATCAA
CAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCACTTGCAGTC
CCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTAGCAGAAATG
GACATGGATCTTGCCGAAGCCGAAGGACAGGTGAGTTTTCTTATCGAGAT
CATGGGGAGTAAGTCGTACCACATCCGCTCCTGCAGCGCAACAAAAAAGA
GGGAGGTGGCCTTAATGGCCGGAAAGGCCATCTTCATCAAACACCGCAGG
TGCATCCTGGAGGAGAGAGACGAGGAGGGTGCGGCTGGAAATCCACTCCG
TCATGCCCCCTCCACCACCATGTCACACGACAGGTCAAAGCCTTGGAGGT
CGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATCGAGACAAGG
TAAAAGAGTATGGGGTGGGTTCGAACAAAGAGGGTCAACGGGGGTTATGG
AGGATCTTTCAAAGAGTTTCATTGTGTCGTTTTGGTACCCCGAGGTCATT
GCCACCCTCAGGACTGATCAACAAGAACAGCACCTGACTCCTCCACCTGT
TACTCTCTCGTTGATTAGATTTCCCAGTTTCGCAACGACTTGTGCGCTCT
CCGGCGGAGCTTCGGAAGTGCCAAAGCCATTGCTGAGAAGCGCATCCTAA
TCCAGCAAGCACCGGGCAGCGGCAAGCTGAAGGGTGCCACGGAGCGTCTG
ATGCGGTACGTAAATGCTTCGAGATAACATTTATCCCAAGAGAAAAGGAA
GGGATAAGGTTCTTCGGCAGTGTCCGTTCACGAGAAAAAACTATTTTTTG
TGCGGCACGCCGCTTGCGCGTTGTCCCACTCTTTTACTGCCCTCACATAG
GTCCACGGAGCAGCTAAACGATGCCAAACGGATGGTAGGCGAGACAGAGG
ATGTTGGTAAGAAAACAATGGGAGTTTAGGACATGAGAAAAGCTAGATGC
GTCAACCTCACTGTCACACGACCCGTTATACGCGCACGCACATAAAGGCG
ATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTGGTGCGGGCT
TCCGAAAAGGTATGCATTGAAAATGGAATATTGGTTTTCTCGTAGGCCTT
TTTCAAAGATTTACATATGCCATTGTATATCTTCCCTCTTCTCGCCTCAA
ATCCAGGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAGACAAGTGAT
GAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTCTCATCCTTA
TAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAACTATGGCGTG
TTGGCAAGGTACCGGAAGAATGATTGAAGGGGCTTTTGGGACCCCCCGGG
TGGAAGCAGCAAAGAAGAGTACATAGTGAAGAGGCAGAAAAAGAAGCCGA
GATGTTGCGCGTCAAAAGTATCAATGTCGATATGTAATGAA

Coding sequence (CDS) from alignment at scaffold_4:774070..775710+

>mRNA_2089 ID=mRNA_2089|Name=jgi.p|Nanoce1779_2|579024|organism=Nannochloropsis oceanica|type=CDS|length=4086bp|location=Sequence derived from alignment at scaffold_4:774070..775710+ (Nannochloropsis oceanica)
ATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCG
CGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCA
CTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTA
GCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACAGGTCAAAGCCTT
GGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATCGAG
ACAAGATTTCCCAGTTTCGCAACGACTTGTGCGCTCTCCGGCGGAGCTTC
GGAAGTGCCAAAGCCATTGCTGAGAAGCGCATCCTAATCCAGCAAGCACC
GGGCAGCGGCAAGCTGAAGGGTGCCACGGAGCGTCTGATGCGGTCCACGG
AGCAGCTAAACGATGCCAAACGGATGGTAGGCGAGACAGAGGATGTTGGC
GATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTGGTGCGGGC
TTCCGAAAAGGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAGACAAG
TGATGAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTCTCATC
CTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAACTATGG
CGTGTTGGCAAGGTACCGGAAGAATGATTGAATGGAGGACGCTCACAAGC
ACATGGAGGAGGAGTACTACCGCCTCAGTCGCGCGATCAACAAGGGCATT
GACGAGCTAGGCAGCAAATACAGCAGCGTCACTTGCAGTCCCACTCCAGC
GATGGCGCCGTCCACCTTGTCGCGCATCTTAGCAGAAATGGACATGGATC
TTGCCGAAGCCGAAGGACAGGTCAAAGCCTTGGAGGTCGAGCTCCGGTGC
ATGAATGCGGTAGACAAGAAGATTTATCGAGACAAGATTTCCCAGTTTCG
CAACGACTTGTGCGCTCTCCGGCGGAGCTTCGGAAGTGCCAAAGCCATTG
CTGAGAAGCGCATCCTAATCCAGCAAGCACCGGGCAGCGGCAAGCTGAAG
GGTGCCACGGAGCGTCTGATGCGGTCCACGGAGCAGCTAAACGATGCCAA
ACGGATGGTAGGCGAGACAGAGGATGTTGGCGATGGCATCATAAATCAAA
TGGAGTCGCAGAGGGAACAACTGGTGCGGGCTTCCGAAAAGGTCCAAGAG
ACAAATTGGTTCACGCGCTCGGCGAGACAAGTGATGAACAACATGCACCT
GCGGGCCATTCGGCACAAAGCCTGTCTCATCCTTATAATTGTGTTCCAGT
TCATCCTCATAGGCATCGTCTTCAACTATGGCGTGTTGGCAAGGTACCGG
AAGAATGATTGAATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTA
CCGCCTCAGTCGCGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAAT
ACAGCAGCGTCACTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTG
TCGCGCATCTTAGCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACA
GGTCAAAGCCTTGGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGA
AGATTTATCGAGACAAGATTTCCCAGTTTCGCAACGACTTGTGCGCTCTC
CGGCGGAGCTTCGGAAGTGCCAAAGCCATTGCTGAGAAGCGCATCCTAAT
CCAGCAAGCACCGGGCAGCGGCAAGCTGAAGGGTGCCACGGAGCGTCTGA
TGCGGTCCACGGAGCAGCTAAACGATGCCAAACGGATGGTAGGCGAGACA
GAGGATGTTGGCGATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACA
ACTGGTGCGGGCTTCCGAAAAGGTCCAAGAGACAAATTGGTTCACGCGCT
CGGCGAGACAAGTGATGAACAACATGCACCTGCGGGCCATTCGGCACAAA
GCCTGTCTCATCCTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGT
CTTCAACTATGGCGTGTTGGCAAGGTACCGGAAGAATGATTGAATGGAGG
ACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTCAGTCGCGCGATC
AACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAGCGTCACTTGCAG
TCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCATCTTAGCAGAAA
TGGACATGGATCTTGCCGAAGCCGAAGGACAGGTCAAAGCCTTGGAGGTC
GAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTATCGAGACAAGAT
TTCCCAGTTTCGCAACGACTTGTGCGCTCTCCGGCGGAGCTTCGGAAGTG
CCAAAGCCATTGCTGAGAAGCGCATCCTAATCCAGCAAGCACCGGGCAGC
GGCAAGCTGAAGGGTGCCACGGAGCGTCTGATGCGGTCCACGGAGCAGCT
AAACGATGCCAAACGGATGGTAGGCGAGACAGAGGATGTTGGCGATGGCA
TCATAAATCAAATGGAGTCGCAGAGGGAACAACTGGTGCGGGCTTCCGAA
AAGGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAGACAAGTGATGAA
CAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTCTCATCCTTATAA
TTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAACTATGGCGTGTTG
GCAAGGTACCGGAAGAATGATTGAATGGAGGACGCTCACAAGCACATGGA
GGAGGAGTACTACCGCCTCAGTCGCGCGATCAACAAGGGCATTGACGAGC
TAGGCAGCAAATACAGCAGCGTCACTTGCAGTCCCACTCCAGCGATGGCG
CCGTCCACCTTGTCGCGCATCTTAGCAGAAATGGACATGGATCTTGCCGA
AGCCGAAGGACAGGTCAAAGCCTTGGAGGTCGAGCTCCGGTGCATGAATG
CGGTAGACAAGAAGATTTATCGAGACAAGATTTCCCAGTTTCGCAACGAC
TTGTGCGCTCTCCGGCGGAGCTTCGGAAGTGCCAAAGCCATTGCTGAGAA
GCGCATCCTAATCCAGCAAGCACCGGGCAGCGGCAAGCTGAAGGGTGCCA
CGGAGCGTCTGATGCGGTCCACGGAGCAGCTAAACGATGCCAAACGGATG
GTAGGCGAGACAGAGGATGTTGGCGATGGCATCATAAATCAAATGGAGTC
GCAGAGGGAACAACTGGTGCGGGCTTCCGAAAAGGTCCAAGAGACAAATT
GGTTCACGCGCTCGGCGAGACAAGTGATGAACAACATGCACCTGCGGGCC
ATTCGGCACAAAGCCTGTCTCATCCTTATAATTGTGTTCCAGTTCATCCT
CATAGGCATCGTCTTCAACTATGGCGTGTTGGCAAGGTACCGGAAGAATG
ATTGAATGGAGGACGCTCACAAGCACATGGAGGAGGAGTACTACCGCCTC
AGTCGCGCGATCAACAAGGGCATTGACGAGCTAGGCAGCAAATACAGCAG
CGTCACTTGCAGTCCCACTCCAGCGATGGCGCCGTCCACCTTGTCGCGCA
TCTTAGCAGAAATGGACATGGATCTTGCCGAAGCCGAAGGACAGGTCAAA
GCCTTGGAGGTCGAGCTCCGGTGCATGAATGCGGTAGACAAGAAGATTTA
TCGAGACAAGATTTCCCAGTTTCGCAACGACTTGTGCGCTCTCCGGCGGA
GCTTCGGAAGTGCCAAAGCCATTGCTGAGAAGCGCATCCTAATCCAGCAA
GCACCGGGCAGCGGCAAGCTGAAGGGTGCCACGGAGCGTCTGATGCGGTC
CACGGAGCAGCTAAACGATGCCAAACGGATGGTAGGCGAGACAGAGGATG
TTGGCGATGGCATCATAAATCAAATGGAGTCGCAGAGGGAACAACTGGTG
CGGGCTTCCGAAAAGGTCCAAGAGACAAATTGGTTCACGCGCTCGGCGAG
ACAAGTGATGAACAACATGCACCTGCGGGCCATTCGGCACAAAGCCTGTC
TCATCCTTATAATTGTGTTCCAGTTCATCCTCATAGGCATCGTCTTCAAC
TATGGCGTGTTGGCAAGGTACCGGAAGAATGATTGA

Synonyms

Publications