jgi.p|Nanoce1779_2|579006, mRNA_2087 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579006
Unique NamemRNA_2087
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length842
Alignment locationscaffold_4:768984..769825 -

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Properties
Property NameValue
TranscriptId579092
TrackFilteredModels2
ProteinId579006
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:768984..769825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579006gene_2087Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579006mRNA_2087-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2087CDS_2087Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2087 ID=mRNA_2087|Name=jgi.p|Nanoce1779_2|579006|organism=Nannochloropsis oceanica|type=mRNA|length=842bp
ACAGGATGGAAGACGCAAGCGGCAGTGCCAAGAAGGAGGGCAGTGCACCA
ATATTACCTCCTGTCGCGGGAAGGAGGGTGGTCGAGAGAGAGGACGACGA
AGGAATCGATACACCAACTCCGGTAGAGGGCGCTATAGCAGACCACATGG
GCAAAGATCATGTAGCCCTGACGGCGTCAACGACTGCGGCTACAACATGG
ACTTGCACACACTGCAGCCTTGTAAATGATGAGCCGGACTTGTCGTTTGT
GCAACAAGGAGGGGTCATATCCTGCAGCGTCTGCCTGATGGTGCGCGGGC
AAGAGGCCTGGCTTTGTCCTTCTTGCAACTATATGAACACGAGTCTCAAG
GCTAAAGCATGCAAAATGTGTGCTTCTACGGCCTATGGGGGCCGAGCGAG
TGGCGGAGGCAGGGGAGACGACATTGCCCGTGACTACAAGCGGCGGAAGC
GGGTGCTCAACAAGCCCAGGTCCTCATCTTCGGGTGGTGCCAGTGCGAGT
GCGGGCGGTGGCGGTGGCGATCAAGGGCGGGAAGCGTGCAGTGTAAAAAG
GGAGGCACCACCATCGCTCAAGGGGCCGGCGACAACGGACGTGGAGTTCA
TCCGCACGGAGCACAGCCATCTCTTTGGTAAGCAGCTCAAGACTATGCAC
CTCTTAGTCCGTGGGCTTCAGACTTTTCCGGCTTTCCGAGATGCGGTGAC
AAAGTTGGGAGTTGACTCGTCACATTTATGAGAGGGTGTGGGCGGCAGAA
TGGTGGCAAGATGAATAGAAAAATGCGTGTATAGGTACGTAAGTGAAGTG
AGGCAATGAAAGAAGAAAGCGAGGCTTGAGACCCGAATGGCA
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protein sequence of jgi.p|Nanoce1779_2|579006

>mRNA_2087-protein ID=mRNA_2087-protein|Name=jgi.p|Nanoce1779_2|579006|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MEDASGSAKKEGSAPILPPVAGRRVVEREDDEGIDTPTPVEGAIADHMGK
DHVALTASTTAATTWTCTHCSLVNDEPDLSFVQQGGVISCSVCLMVRGQE
AWLCPSCNYMNTSLKAKACKMCASTAYGGRASGGGRGDDIARDYKRRKRV
LNKPRSSSSGGASASAGGGGGDQGREACSVKREAPPSLKGPATTDVEFIR
TEHSHLFGKQLKTMHLLVRGLQTFPAFRDAVTKLGVDSSHL*
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mRNA from alignment at scaffold_4:768984..769825-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2087 ID=mRNA_2087|Name=jgi.p|Nanoce1779_2|579006|organism=Nannochloropsis oceanica|type=mRNA|length=842bp|location=Sequence derived from alignment at scaffold_4:768984..769825- (Nannochloropsis oceanica)
ACAGGATGGAAGACGCAAGCGGCAGTGCCAAGAAGGAGGGCAGTGCACCA
ATATTACCTCCTGTCGCGGGAAGGAGGGTGGTCGAGAGAGAGGACGACGA
AGGAATCGATACACCAACTCCGGTAGAGGGCGCTATAGCAGACCACATGG
GCAAAGATCATGTAGCCCTGACGGCGTCAACGACTGCGGCTACAACATGG
ACTTGCACACACTGCAGCCTTGTAAATGATGAGCCGGACTTGTCGTTTGT
GCAACAAGGAGGGGTCATATCCTGCAGCGTCTGCCTGATGGTGCGCGGGC
AAGAGGCCTGGCTTTGTCCTTCTTGCAACTATATGAACACGAGTCTCAAG
GCTAAAGCATGCAAAATGTGTGCTTCTACGGCCTATGGGGGCCGAGCGAG
TGGCGGAGGCAGGGGAGACGACATTGCCCGTGACTACAAGCGGCGGAAGC
GGGTGCTCAACAAGCCCAGGTCCTCATCTTCGGGTGGTGCCAGTGCGAGT
GCGGGCGGTGGCGGTGGCGATCAAGGGCGGGAAGCGTGCAGTGTAAAAAG
GGAGGCACCACCATCGCTCAAGGGGCCGGCGACAACGGACGTGGAGTTCA
TCCGCACGGAGCACAGCCATCTCTTTGGTAAGCAGCTCAAGACTATGCAC
CTCTTAGTCCGTGGGCTTCAGACTTTTCCGGCTTTCCGAGATGCGGTGAC
AAAGTTGGGAGTTGACTCGTCACATTTATGAGAGGGTGTGGGCGGCAGAA
TGGTGGCAAGATGAATAGAAAAATGCGTGTATAGGTACGTAAGTGAAGTG
AGGCAATGAAAGAAGAAAGCGAGGCTTGAGACCCGAATGGCA
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Coding sequence (CDS) from alignment at scaffold_4:768984..769825-

>mRNA_2087 ID=mRNA_2087|Name=jgi.p|Nanoce1779_2|579006|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_4:768984..769825- (Nannochloropsis oceanica)
ATGGAAGACGCAAGCGGCAGTGCCAAGAAGGAGGGCAGTGCACCAATATT
ACCTCCTGTCGCGGGAAGGAGGGTGGTCGAGAGAGAGGACGACGAAGGAA
TCGATACACCAACTCCGGTAGAGGGCGCTATAGCAGACCACATGGGCAAA
GATCATGTAGCCCTGACGGCGTCAACGACTGCGGCTACAACATGGACTTG
CACACACTGCAGCCTTGTAAATGATGAGCCGGACTTGTCGTTTGTGCAAC
AAGGAGGGGTCATATCCTGCAGCGTCTGCCTGATGGTGCGCGGGCAAGAG
GCCTGGCTTTGTCCTTCTTGCAACTATATGAACACGAGTCTCAAGGCTAA
AGCATGCAAAATGTGTGCTTCTACGGCCTATGGGGGCCGAGCGAGTGGCG
GAGGCAGGGGAGACGACATTGCCCGTGACTACAAGCGGCGGAAGCGGGTG
CTCAACAAGCCCAGGTCCTCATCTTCGGGTGGTGCCAGTGCGAGTGCGGG
CGGTGGCGGTGGCGATCAAGGGCGGGAAGCGTGCAGTGTAAAAAGGGAGG
CACCACCATCGCTCAAGGGGCCGGCGACAACGGACGTGGAGTTCATCCGC
ACGGAGCACAGCCATCTCTTTGGTAAGCAGCTCAAGACTATGCACCTCTT
AGTCCGTGGGCTTCAGACTTTTCCGGCTTTCCGAGATGCGGTGACAAAGT
TGGGAGTTGACTCGTCACATTTATGA
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Synonyms
Publications