jgi.p|Nanoce1779_2|628239, mRNA_2085 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628239
Unique NamemRNA_2085
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1306
Alignment locationscaffold_4:765247..766552 -

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Properties
Property NameValue
TranscriptId628325
TrackFilteredModels2
ProteinId628239
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:765247..766552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628239gene_2085Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628239mRNA_2085-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2085CDS_2085Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2085 ID=mRNA_2085|Name=jgi.p|Nanoce1779_2|628239|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp
CTCTATGGCGCTGACACATGTACACCCGCCCTCGACCATAATGGTTTGTT
CTACGTTCCATCACCCCCTCAATAATACAAATATGCCCCAAATCATGATA
ATATCCATCTGCTTCTACCCTCTCTCATATTGATTTTGAATAATTTGTTG
ATTTGATACATTTTCCAATTGTAGCTATGCCCCCGTTTTCTCTCTAGTCG
CGGATTTATACACATGGCCTGTGCCGTCGGCCGGAAATCTCATAACATAA
TAATTGCCCCAGCCGCTTCTTCCCCGACGTCCCTGTCGCTGCCACCACAG
CCCACCACCCTGCTGCGAGCCTCTCGTAGGCGTGATTGGTCTGAGATCAG
TGTATCCACACCCACATTCCCCCCCCAACCTTACACCTACAAGCTTAAAC
AGCTTTAAAACAGCTTTCTGTACGTACTCCAAACCAGCCATGGTCGTGCC
AAAGATGCACCAGCAGCCTTACTACCACCGCGAGGACGATAGTGAGGACG
ATCACGAAGGCGTCGAAGAGGATGTCCGGGAAGGAAAGGATACAACGCTT
GACATGATCCTGCAGCAACTAATACGCGATGTGGAGGAGCAAGGCAGCAC
CACTTCGAGCATGCGCTCAGGGTGTGGGCTGGGGAAGGATGAGAGGAAAA
TCGGGGCAAGTCGGGGCGTCCGGGGGCCCCGCCAGCCGCGTGACAAGCAG
AGCATCCAGGCCAGACGGCAATTCCACTGCCACGTCTCTAGCTGCGACAA
GGCATTTACGGAGAGGCGAAACCTTTCCCAACACCTCAAGACGGGGCACA
GCGACAGACGACCATTCTCATGCACCGTTCAAGGGTGCAACAAATCATTC
AAGTACAAGTGCGTGCTCGATAAGCACCAGGAGTATTGCTGCATGGGCCC
CACGCACTCATTGGTGCACCTACCGCATAGCTTGGCGGACATTATCTCCC
GTAAGCGCAAACAGCCCCCGCTAGAGGCCACGGTGCAACAGCAATTGAAT
TTGCGTTACCGCAGGACAACCACCTTGTCCCAGCCCACGATTCGAGCACT
GCATTCCTTGGATCGCTCGTCCGCTCTCTATCGCAATCTGCTATTGGATG
TCATTATTGGGATAGTAGGGTAGAAAAAAATGGGGGGAGAGGGGAGGACG
AGGAAGAATGGAAAGATCCACAAACTGTACTCCAAACTGTTGTAAGGTGA
TGCGGGAGAGGAAAGAAATGAGACACACAAAAAAGATGATAGAAGATGTT
GATAGATGCAAACCAAACGCTTTTGAGAGCGCAAAAATGGAATTGAAACG
AAAATT
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protein sequence of jgi.p|Nanoce1779_2|628239

>mRNA_2085-protein ID=mRNA_2085-protein|Name=jgi.p|Nanoce1779_2|628239|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MVVPKMHQQPYYHREDDSEDDHEGVEEDVREGKDTTLDMILQQLIRDVEE
QGSTTSSMRSGCGLGKDERKIGASRGVRGPRQPRDKQSIQARRQFHCHVS
SCDKAFTERRNLSQHLKTGHSDRRPFSCTVQGCNKSFKYKCVLDKHQEYC
CMGPTHSLVHLPHSLADIISRKRKQPPLEATVQQQLNLRYRRTTTLSQPT
IRALHSLDRSSALYRNLLLDVIIGIVG*
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mRNA from alignment at scaffold_4:765247..766552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2085 ID=mRNA_2085|Name=jgi.p|Nanoce1779_2|628239|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp|location=Sequence derived from alignment at scaffold_4:765247..766552- (Nannochloropsis oceanica)
CTCTATGGCGCTGACACATGTACACCCGCCCTCGACCATAATGGTTTGTT
CTACGTTCCATCACCCCCTCAATAATACAAATATGCCCCAAATCATGATA
ATATCCATCTGCTTCTACCCTCTCTCATATTGATTTTGAATAATTTGTTG
ATTTGATACATTTTCCAATTGTAGCTATGCCCCCGTTTTCTCTCTAGTCG
CGGATTTATACACATGGCCTGTGCCGTCGGCCGGAAATCTCATAACATAA
TAATTGCCCCAGCCGCTTCTTCCCCGACGTCCCTGTCGCTGCCACCACAG
CCCACCACCCTGCTGCGAGCCTCTCGTAGGCGTGATTGGTCTGAGATCAG
TGTATCCACACCCACATTCCCCCCCCAACCTTACACCTACAAGCTTAAAC
AGCTTTAAAACAGCTTTCTGTACGTACTCCAAACCAGCCATGGTCGTGCC
AAAGATGCACCAGCAGCCTTACTACCACCGCGAGGACGATAGTGAGGACG
ATCACGAAGGCGTCGAAGAGGATGTCCGGGAAGGAAAGGATACAACGCTT
GACATGATCCTGCAGCAACTAATACGCGATGTGGAGGAGCAAGGCAGCAC
CACTTCGAGCATGCGCTCAGGGTGTGGGCTGGGGAAGGATGAGAGGAAAA
TCGGGGCAAGTCGGGGCGTCCGGGGGCCCCGCCAGCCGCGTGACAAGCAG
AGCATCCAGGCCAGACGGCAATTCCACTGCCACGTCTCTAGCTGCGACAA
GGCATTTACGGAGAGGCGAAACCTTTCCCAACACCTCAAGACGGGGCACA
GCGACAGACGACCATTCTCATGCACCGTTCAAGGGTGCAACAAATCATTC
AAGTACAAGTGCGTGCTCGATAAGCACCAGGAGTATTGCTGCATGGGCCC
CACGCACTCATTGGTGCACCTACCGCATAGCTTGGCGGACATTATCTCCC
GTAAGCGCAAACAGCCCCCGCTAGAGGCCACGGTGCAACAGCAATTGAAT
TTGCGTTACCGCAGGACAACCACCTTGTCCCAGCCCACGATTCGAGCACT
GCATTCCTTGGATCGCTCGTCCGCTCTCTATCGCAATCTGCTATTGGATG
TCATTATTGGGATAGTAGGGTAGAAAAAAATGGGGGGAGAGGGGAGGACG
AGGAAGAATGGAAAGATCCACAAACTGTACTCCAAACTGTTGTAAGGTGA
TGCGGGAGAGGAAAGAAATGAGACACACAAAAAAGATGATAGAAGATGTT
GATAGATGCAAACCAAACGCTTTTGAGAGCGCAAAAATGGAATTGAAACG
AAAATT
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Coding sequence (CDS) from alignment at scaffold_4:765247..766552-

>mRNA_2085 ID=mRNA_2085|Name=jgi.p|Nanoce1779_2|628239|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_4:765247..766552- (Nannochloropsis oceanica)
ATGGTCGTGCCAAAGATGCACCAGCAGCCTTACTACCACCGCGAGGACGA
TAGTGAGGACGATCACGAAGGCGTCGAAGAGGATGTCCGGGAAGGAAAGG
ATACAACGCTTGACATGATCCTGCAGCAACTAATACGCGATGTGGAGGAG
CAAGGCAGCACCACTTCGAGCATGCGCTCAGGGTGTGGGCTGGGGAAGGA
TGAGAGGAAAATCGGGGCAAGTCGGGGCGTCCGGGGGCCCCGCCAGCCGC
GTGACAAGCAGAGCATCCAGGCCAGACGGCAATTCCACTGCCACGTCTCT
AGCTGCGACAAGGCATTTACGGAGAGGCGAAACCTTTCCCAACACCTCAA
GACGGGGCACAGCGACAGACGACCATTCTCATGCACCGTTCAAGGGTGCA
ACAAATCATTCAAGTACAAGTGCGTGCTCGATAAGCACCAGGAGTATTGC
TGCATGGGCCCCACGCACTCATTGGTGCACCTACCGCATAGCTTGGCGGA
CATTATCTCCCGTAAGCGCAAACAGCCCCCGCTAGAGGCCACGGTGCAAC
AGCAATTGAATTTGCGTTACCGCAGGACAACCACCTTGTCCCAGCCCACG
ATTCGAGCACTGCATTCCTTGGATCGCTCGTCCGCTCTCTATCGCAATCT
GCTATTGGATGTCATTATTGGGATAGTAGGGTAG
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Synonyms
Publications