jgi.p|Nanoce1779_2|628236, mRNA_2082 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628236
Unique Name	mRNA_2082
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2038
Alignment location	scaffold_4:751868..753973 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628322
Track	FilteredModels2
ProteinId	628236

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:751868..753973 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628236	gene_2082	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628236	mRNA_2082-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2082	CDS_2082	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:751868..753973+
coding sequence from alignment at scaffold_4:751868..753973+

mRNA sequence

>mRNA_2082 ID=mRNA_2082|Name=jgi.p|Nanoce1779_2|628236|organism=Nannochloropsis oceanica|type=mRNA|length=2038bp
AGAGCGGCTTCTGATTAGGTGTCTGGAAGCGAGGGCTGTCTTTTGTAAAG
GCAAGGCAACATACAGGTGGCATCCGGATGGGTGAGGGTCTTGCTTCCGC
GGACGCCTGCCTCATCTCTCGCTCTATGCCTCGTGGACAAGTAACATCAA
AACAAATGTGCCGAGCCGATGATTCGGGTCATTGCGTCCCTGAGTAGGAA
GGGAAGGTGCAACGTTGCGATCGATAGGTCATTTGGTCCATAATGCTTGA
CAACAAGAGTTGAAAAGGAGGAATGGTGGGAAGGAGGGAGTAGACGTTGC
ATTGATTTGTCAAGAGACAGGAACCGGCCTTGGCGAGTCTGTGCGGTGAT
CTCACATGAGACCTTGTTACTAGAGAATATTTTCTCTCTCTTCTCGCCCT
CTCTTTTTTTTCCCACACTCTTTTCTCCTATCTCTTCCTTTCATACTTCT
CCATCCTTCTTCTCTTGCTTGTCGTTGGTTATGGAAGGTGAAAGTGGGAG
AAATCGGGTTTTGACTTATGAGGTAACTCGCTATACCACACGCCCTGGGT
AATAGTCGCCCGATGAGCTCCACATTTTACTTGTCCTCATCAACGCCGAG
GCCCAAGGTTGATATCTTCCACAAGATCCTTCGACCATTAGCCTTCCCGA
AACAGCCCGCTTAGATGCGCTGGAGCTCTTAGCTCTCCTGCTCTGGGAGA
GCATGACTCGCTTCAACATCATAAGACGCTGATAGAAGCCCTGCTTGCAA
GCCTTCAGAGTGAAATTCGTTACGCATGGCGACCCTCCTCGGACGACAGC
ATTCAAAACAATCCAATTTACAGGGTACATCTCCCGTCCACCTTTTCGAG
AGCTATCTAGCAATCAAACATATTCCCATCGTTTCAGGGGAGTAATGAGG
TTGGTCTGCTTGACCTGCTTCATGACAATCTCCTCCTCTACCATCCATGA
TGTTTCATGCGCCAGATATGTCAATGTTCGTTAATGCACCAACAAATATT
TGGCCCCAGTCCGATACTTCGATTTATCTATATATTCGTGAAAGACGCTA
TGGGACTCGCTTGCAGTGGTTTGCTGTCACGGGAAGAGAGACTCCAGACT
CACTTGAAATGCACCCTTCTTCTTGGTGCATGATTTGAGAGTGCGTGCTT
TTGTCACGGTATTGCATCGATTTTGTGGAAAAGGCAAAACTAAAAATCAA
AAACATATTTTGTCGTCTTATCACGAGTGATTACGAGAAACATCATACAC
GGACTCGCTGAAGTCAAGAAGGCTCCATGCTCCCTGGCCCCACTATTAAA
CCAACACAGGGTACCCCTGGCCCCCCGGCTTCTCTCATCCTCAGCACACT
GCTCTCTGTGCCCTCGAGAAAGGCCATCGGTTTTGACACTTGTAACAGCG
CCGGCCTGGGACCACCTTTTCAGTTACACTTCACAAAATCACATCACCCA
GACTGTGCGCTTGGCTTCTACACACACGCTGCCTCCCGTGCAACCATCAT
GGCACTTCCCATTCCATCCGCCGTAACGGCCACCTCCACCTCATGCTCCC
ACCTACCACTGCAGCCACAAGCACAACGACAACGCCAACGCGGGGCTGCC
GACACGTTTGCGCTCGCCGTGACGCGACAAGCCGTGGCACAAGCAGCGCT
GGCAGTGGGGTGCAAGCACACTTACCCATCCGTCCTAGATGCCCTTACAG
ACATGGTCCGGGACTTCATCATAGCGTTGGGCACGGAGGCGCAGACGAAG
GCCGAGTCCGGTGGCCGCACGCGCGTCACGTTACTGGACGTGCTGGCGGC
ATTGGATGAGCCCCAGCAAGAGACAGGGCGGGACCGGTACGAACTTGATT
GGCGGGCCCTGCGGGGCTTTGCGTTTCGGGGAGATTTAACGCAACTGGAC
CAACCCGAAGCCTTCCAATGGTATCAGCCATTCCATACACACATTCCGCC
ATTTCCCGTTTGCAGCGGCAGCAGTGGATCGGGCATTGCTCCGAGTGATG
GCCTTGAGCGGGCGCTGCCCGTCGAAGGGGGTGGGGAG

protein sequence of jgi.p|Nanoce1779_2|628236

>mRNA_2082-protein ID=mRNA_2082-protein|Name=jgi.p|Nanoce1779_2|628236|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MLPGPTIKPTQGTPGPPASLILSTLLSVPSRKAIGFDTCNSAGLGPPFQL
HFTKSHHPDCALGFYTHAASRATIMALPIPSAVTATSTSCSHLPLQPQAQ
RQRQRGAADTFALAVTRQAVAQAALAVGCKHTYPSVLDALTDMVRDFIIA
LGTEAQTKAESGGRTRVTLLDVLAALDEPQQETGRDRYELDWRALRGFAF
RGDLTQLDQPEAFQWYQPFHTHIPPFPVCSGSSGSGIAPSDGLERALPVE
GGGE

mRNA from alignment at scaffold_4:751868..753973+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2082 ID=mRNA_2082|Name=jgi.p|Nanoce1779_2|628236|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp|location=Sequence derived from alignment at scaffold_4:751868..753973+ (Nannochloropsis oceanica)
AGAGCGGCTTCTGATTAGGTGTCTGGAAGCGAGGGCTGTCTTTTGTAAAG
GCAAGGCAACATACAGGTGGCATCCGGATGGGTGAGGGTCTTGCTTCCGC
GGACGCCTGCCTCATCTCTCGCTCTATGCCTCGTGGACAAGTAACATCAA
AACAAATGTGCCGAGCCGATGATTCGGGTCATTGCGTCCCTGAGTAGGAA
GGGAAGGTGCAACGTTGCGATCGATAGGTCATTTGGTCCATAATGCTTGA
CAACAAGAGTTGAAAAGGAGGAATGGTGGGAAGGAGGGAGTAGACGTTGC
ATTGATTTGTCAAGAGACAGGAACCGGCCTTGGCGAGTCTGTGCGGTGAT
CTCACATGAGACCTTGTTACTAGAGAATATTTTCTCTCTCTTCTCGCCCT
CTCTTTTTTTTCCCACACTCTTTTCTCCTATCTCTTCCTTTCATACTTCT
CCATCCTTCTTCTCTTGCTTGTCGTTGGTTATGGAAGGTGAAAGTGGGAG
AAATCGGGTTTTGACTTATGAGGTAACTCGCTATACCACACGCCCTGGGT
AATAGTCGCCCGATGAGCTCCACATTTTACTTGTCCTCATCAACGCCGAG
GCCCAAGGTTGATATCTTCCACAAGATCCTTCGACCATTAGCCTTCCCGA
AACAGCCCGCTTAGATGCGCTGGAGCTCTTAGCTCTCCTGCTCTGGGAGA
GCATGACTCGCTTCAACATCATAAGACGCTGATAGAAGCCCTGCTTGCAA
GCCTTCAGAGTGAAATTCGTTACGCATGGCGACCCTCCTCGGACGACAGC
ATTCAAAACAATCCAATTTACAGGGTACATCTCCCGTCCACCTTTTCGAG
AGCTATCTAGCAATCAAACATATTCCCATCGTTTCAGGGGAGTAATGAGG
TTGGTCTGCTTGACCTGCTTCATGACAATCTCCTCCTCTACCATCCATGA
TGTTTCATGCGCCAGATATGTCAATGTTCGTTAATGCACCAACAAATATT
TGGCCCCAGTCCGATACTTCGATTTATCTATATATTCGTGAAAGACGCTA
TGGGACTCGCTTGCAGTGGTTTGCTGTCACGGGAAGAGAGACTCCAGACT
CACTTGAAATGCACCCTTCTTCTTGGTGCATGATTTGAGAGTGCGTGCTT
TTGTCACGGTATTGCATCGATTTTGTGGAAAAGGCAAAACTAAAAATCAA
AAACATATTTTGTCGTCTTATCACGAGTGATTACGAGAAACATCATACAC
GGACTCGCTGAAGTCAAGAAGGCTCCATGCTCCCTGGCCCCACTATTAAA
CCAACACAGGGTACCCCTGGCCCCCCGGCTTCTCTCATCCTCAGCACACT
GCTCTCTGTGCCCTCGAGAAAGGCCATCGGTTTTGACACTTGTAACAGCG
CCGGCCTGGGACCACCTTTTCAGGTGTGGCTTGATAGAAGTAGTAACTGC
GTTTCGTCGAAAGAAAGTTGGCTGGACTAACATTATTTCAGTTACACTTC
ACAAAATCACATCACCCAGACTGTGCGCTTGGCTTCTACACACACGCTGC
CTCCCGTGCAACCATCATGGCACTTCCCATTCCATCCGCCGTAACGGCCA
CCTCCACCTCATGCTCCCACCTACCACTGCAGCCACAAGCACAACGACAA
CGCCAACGCGGGGCTGCCGACACGTTTGCGCTCGCCGTGACGCGACAAGC
CGTGGCACAAGCAGCGCTGGCAGTGGGGTGCAAGCACACTTACCCATCCG
TCCTAGATGCCCTTACAGACATGGTCCGGGACTTCATCATAGCGTTGGGC
ACGGAGGCGCAGACGAAGGCCGAGTCCGGTGGCCGCACGCGCGTCACGTT
ACTGGACGTGCTGGCGGCATTGGATGAGCCCCAGCAAGAGACAGGGCGGG
ACCGGTACGAACTTGATTGGCGGGCCCTGCGGGGCTTTGCGTTTCGGGGA
GATTTAACGCAACTGGACCAACCCGAAGCCTTCCAATGGTATCAGCCATT
CCATACACACATTCCGCCATTTCCCGTTTGCAGCGGCAGCAGTGGATCGG
GCATTGCTCCGAGTGATGGCCTTGAGCGGGCGCTGCCCGTCGAAGGGGGT
GGGGAG

Coding sequence (CDS) from alignment at scaffold_4:751868..753973+

>mRNA_2082 ID=mRNA_2082|Name=jgi.p|Nanoce1779_2|628236|organism=Nannochloropsis oceanica|type=CDS|length=1524bp|location=Sequence derived from alignment at scaffold_4:751868..753973+ (Nannochloropsis oceanica)
ATGCTCCCTGGCCCCACTATTAAACCAACACAGGGTACCCCTGGCCCCCC
GGCTTCTCTCATCCTCAGCACACTGCTCTCTGTGCCCTCGAGAAAGGCCA
TCGGTTTTGACACTTGTAACAGCGCCGGCCTGGGACCACCTTTTCAGTTA
CACTTCACAAAATCACATCACCCAGACTGTGCGCTTGGCTTCTACACACA
CGCTGCCTCCCGTGCAACCATCATGGCACTTCCCATTCCATCCGCCGTAA
CGGCCACCTCCACCTCATGCTCCCACCTACCACTGCAGCCACAAGCACAA
CGACAACGCCAACGCGGGGCTGCCGACACGTTTGCGCTCGCCGTGACGCG
ACAAGCCGTGGCACAAGCAGCGCTGGCAGTGGGGTGCAAGCACACTTACC
CATCCGTCCTAGATGCCCTTACAGACATGGTCCGGGACTTCATCATAGCG
TTGGGCACGGAGGCGCAGACGAAGGCCGAGTCCGGTGGCCGCACGCGCGT
CACGTTACTGGACGTGCTGGCGGCATTGGATGAGCCCCAGCAAGAGACAG
GGCGGGACCGGTACGAACTTGATTGGCGGGCCCTGCGGGGCTTTGCGTTT
CGGGGAGATTTAACGCAACTGGACCAACCCGAAGCCTTCCAATGGTATCA
GCCATTCCATACACACATTCCGCCATTTCCCGTTTGCAGCGGCAGCAGTG
GATCGGGCATTGCTCCGAGTGATGGCCTTGAGCGGGCGCTGCCCGTCGAA
GGGGGTGGGGAGATGCTCCCTGGCCCCACTATTAAACCAACACAGGGTAC
CCCTGGCCCCCCGGCTTCTCTCATCCTCAGCACACTGCTCTCTGTGCCCT
CGAGAAAGGCCATCGGTTTTGACACTTGTAACAGCGCCGGCCTGGGACCA
CCTTTTCAGTTACACTTCACAAAATCACATCACCCAGACTGTGCGCTTGG
CTTCTACACACACGCTGCCTCCCGTGCAACCATCATGGCACTTCCCATTC
CATCCGCCGTAACGGCCACCTCCACCTCATGCTCCCACCTACCACTGCAG
CCACAAGCACAACGACAACGCCAACGCGGGGCTGCCGACACGTTTGCGCT
CGCCGTGACGCGACAAGCCGTGGCACAAGCAGCGCTGGCAGTGGGGTGCA
AGCACACTTACCCATCCGTCCTAGATGCCCTTACAGACATGGTCCGGGAC
TTCATCATAGCGTTGGGCACGGAGGCGCAGACGAAGGCCGAGTCCGGTGG
CCGCACGCGCGTCACGTTACTGGACGTGCTGGCGGCATTGGATGAGCCCC
AGCAAGAGACAGGGCGGGACCGGTACGAACTTGATTGGCGGGCCCTGCGG
GGCTTTGCGTTTCGGGGAGATTTAACGCAACTGGACCAACCCGAAGCCTT
CCAATGGTATCAGCCATTCCATACACACATTCCGCCATTTCCCGTTTGCA
GCGGCAGCAGTGGATCGGGCATTGCTCCGAGTGATGGCCTTGAGCGGGCG
CTGCCCGTCGAAGGGGGTGGGGAG

Synonyms

Publications