jgi.p|Nanoce1779_2|576565, mRNA_208 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576565
Unique Name	mRNA_208
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2364
Alignment location	scaffold_3:524537..526900 -

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Properties


Property Name	Value
TranscriptId	576651
Track	FilteredModels2
ProteinId	576565

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:524537..526900 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576565	gene_208	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576565	mRNA_208-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_208	CDS_208	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:524537..526900-
coding sequence from alignment at scaffold_3:524537..526900-

mRNA sequence

>mRNA_208 ID=mRNA_208|Name=jgi.p|Nanoce1779_2|576565|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
ATCGGCGCGCGCTTTACAACGAGGCCTTCCTTTTCAATCTCAAAGCCCAT
CAACTCCCATCGTTACAACCTGGAGTAAGCCCACATGTAATGCTGCCCTC
TAGTAAGTTTTCTTGCTTCACTTGCTTTTCGCCGTACCGACTCCCAGACA
CGAACTTCTTAGTTTGTCTTCTCCCAACAACAACCTCAAACAGCGAGTAT
TCCGACATCAGGGCAAGGACATACCCCGCCTTTGTGAACGCAACTCTGCC
GTGCAAGCAGTAATGCCGCGTACTGACGGTCATAGTGGCTGCGATGCTTC
GTTTGACTGCCAGCCACACAAATTGTCGCTTCTGGAGCCCTCGAGTGCTG
CCGATGATGACGTTGTCGCGCCTCTGGCGACGACGATGCCGTCGTAATGC
TGTCAACAGCGGCCGCCTGCTCTGACTTACATGCATGCCTGGCATTCAAC
GACTCATACCAGTGCAGTGGTACGACCGCAATTCACGGAATGCCGGTATA
TTATCAGCCCTTTGGCTTTTCATTAGAACGGCGCCCCTCCTCTTCTTGAC
ATGCTTTGGTCCACCGTGCGTTGCGCCGGACACGAGCTGCCTTTGTGCAC
AATGCCGTCATGCTTCCGTTTCGCCGAGCCACTATCATAAAAGCGGTTGT
GTTTTGGTGGGTAAAATTTGCCCTCACTCGGTGAAAAGGCAGAAGATTTT
GTGGCCCTTTGCCGCCGACAGCGCTCTTCGTTCTTTTTCGTACAGAGTTT
TCTTGTAGACCACCAGCAATTAGTTTTTTTTTATGTAAATCCAATTGGCG
TCATGTTTATTCGTGATGCGCTGCTTTGTGTAGCAAGAACAGGAGCTTTC
CAGGGTAGAAGAGTGATACTTGCCTTGTCGATGCGCTCGCTGGAGGACCT
CCCTTATGCATTCAAACTAACTCAAGCCTTCTCTCGCTCTTTCTCACCTT
GCAGGCCACGATAGGCCCCAAAACTTAGCACAAGTGCTTTGCAGAACGTT
TCCATCGTCGTCGTCTCCTCCCTCCCCATCTCCAAGATTTTAGCACCATG
GGCCGGCTCTCCTCATTCCCCTTCTCGCTGCTGCTTTTCGTTTTTCTCTT
GGTGCTGCTGCCGGCAAAATTCAAGGCATTTACTATTTTCAGATATCGCT
CAACTCATCGCTTTTTAAGCACCTCTCCAATTCGTGCTTCAATCGAGGAG
CTCTACAGCGGCGAGCCCCTCGATCCCAACCGTCGCACCCTCCGCCTCGC
CTTTTTGGCCGCTTCCCGGCCCAAGAAACCCGCCAAAAGCGACAAGGAAC
GACAGCTGGATGAGAAGGTGTGGGGCCGCTGGCGCTTAGTAGAAGAGTCG
ATCGACCGGCCCCTTGCTGCTGATCTGGCCAAGTACGGGGCCAAGCTGAA
GCCGACGTATTCGAAGTTCGAGGAGGATTTATTTTTGGACATGTATAATG
GCCTCATGCTGACGAAGGAGGACACGTGTGCATTTGGCATGGGCTGGCAA
TGGACGAACTTGAAAGATGTGTACTCGGCCCCAACATTGCGGTTTCGGAT
CAACAGGAAGGAGGTGGGCATTGATTTCGACGAGTATGAATCGGTGGATG
ATATGCCTAGCGTCAGTTTTTACCTGGGCACGTTCAAGGATGGGGCGATG
GATGTCATAGAGGGGAAGATCCAGAGAAATAGAGATGCGACCCCGCCGGA
GGATGGGTCGGAAAAAAAAATCGTTACGGTGGGAACATTCACAATGGTCA
AGGTGGCGGCTTTGCAATTTTGAGAGGAATAAGAAAGCTGACGGAGGAGT
GTGAGCTGTCATTTAAGGGCAGTGGGGAGCGTTTGCTGCTGGATGAATTG
GGGCAACATTATGAGCAGCGGCTGCAGCTAAAAGATGAAGGAAAAAGAGA
CGCGATTAACAATGTAAATAGGCACTTTGCGGCTGTGAATGAGTTTTGTT
TGTATCTGATCTCTTTTTCAACTTAAAGTTATCACGTAACGAGAAACACT
ACGATAGTATTCGAATAGATATGTTGATGTATTTGACAATGCAGCAGGGA
GCAGATGAGAGTGGGGAGGAGAAACAAGATGAAGTTCTGGCCATTTTTCT
GAATTCGGTTCACGCTAGCGGCAATGTGGTGGAGGTCAGAGTTAGAAGAG
GAATGGATCGCTCACCTGTCAATTCATCCGATAAAACAAAATGAATAAAG
AGGGAGGAAAAGAGAACGCAGGAGTGAAAGTGGCACAAAGGCGTCCCGTA
CGGTGGAGGGAAGTGAGTGGCAAGGAAGGACGTACAAGAAAACATAAGCA
TTCACAAAAAAAAGGAAGGAGAGGAACAAGCTAGAAATTTCCAACAAATG
TTCACCAAGCCAGC

protein sequence of jgi.p|Nanoce1779_2|576565

>mRNA_208-protein ID=mRNA_208-protein|Name=jgi.p|Nanoce1779_2|576565|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MGRLSSFPFSLLLFVFLLVLLPAKFKAFTIFRYRSTHRFLSTSPIRASIE
ELYSGEPLDPNRRTLRLAFLAASRPKKPAKSDKERQLDEKVWGRWRLVEE
SIDRPLAADLAKYGAKLKPTYSKFEEDLFLDMYNGLMLTKEDTCAFGMGW
QWTNLKDVYSAPTLRFRINRKEVGIDFDEYESVDDMPSVSFYLGTFKDGA
MDVIEGKIQRNRDATPPEDGSEKKIVTVGTFTMVKVAALQF*

mRNA from alignment at scaffold_3:524537..526900-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_208 ID=mRNA_208|Name=jgi.p|Nanoce1779_2|576565|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp|location=Sequence derived from alignment at scaffold_3:524537..526900- (Nannochloropsis oceanica)
ATCGGCGCGCGCTTTACAACGAGGCCTTCCTTTTCAATCTCAAAGCCCAT
CAACTCCCATCGTTACAACCTGGAGTAAGCCCACATGTAATGCTGCCCTC
TAGTAAGTTTTCTTGCTTCACTTGCTTTTCGCCGTACCGACTCCCAGACA
CGAACTTCTTAGTTTGTCTTCTCCCAACAACAACCTCAAACAGCGAGTAT
TCCGACATCAGGGCAAGGACATACCCCGCCTTTGTGAACGCAACTCTGCC
GTGCAAGCAGTAATGCCGCGTACTGACGGTCATAGTGGCTGCGATGCTTC
GTTTGACTGCCAGCCACACAAATTGTCGCTTCTGGAGCCCTCGAGTGCTG
CCGATGATGACGTTGTCGCGCCTCTGGCGACGACGATGCCGTCGTAATGC
TGTCAACAGCGGCCGCCTGCTCTGACTTACATGCATGCCTGGCATTCAAC
GACTCATACCAGTGCAGTGGTACGACCGCAATTCACGGAATGCCGGTATA
TTATCAGCCCTTTGGCTTTTCATTAGAACGGCGCCCCTCCTCTTCTTGAC
ATGCTTTGGTCCACCGTGCGTTGCGCCGGACACGAGCTGCCTTTGTGCAC
AATGCCGTCATGCTTCCGTTTCGCCGAGCCACTATCATAAAAGCGGTTGT
GTTTTGGTGGGTAAAATTTGCCCTCACTCGGTGAAAAGGCAGAAGATTTT
GTGGCCCTTTGCCGCCGACAGCGCTCTTCGTTCTTTTTCGTACAGAGTTT
TCTTGTAGACCACCAGCAATTAGTTTTTTTTTATGTAAATCCAATTGGCG
TCATGTTTATTCGTGATGCGCTGCTTTGTGTAGCAAGAACAGGAGCTTTC
CAGGGTAGAAGAGTGATACTTGCCTTGTCGATGCGCTCGCTGGAGGACCT
CCCTTATGCATTCAAACTAACTCAAGCCTTCTCTCGCTCTTTCTCACCTT
GCAGGCCACGATAGGCCCCAAAACTTAGCACAAGTGCTTTGCAGAACGTT
TCCATCGTCGTCGTCTCCTCCCTCCCCATCTCCAAGATTTTAGCACCATG
GGCCGGCTCTCCTCATTCCCCTTCTCGCTGCTGCTTTTCGTTTTTCTCTT
GGTGCTGCTGCCGGCAAAATTCAAGGCATTTACTATTTTCAGATATCGCT
CAACTCATCGCTTTTTAAGCACCTCTCCAATTCGTGCTTCAATCGAGGAG
CTCTACAGCGGCGAGCCCCTCGATCCCAACCGTCGCACCCTCCGCCTCGC
CTTTTTGGCCGCTTCCCGGCCCAAGAAACCCGCCAAAAGCGACAAGGAAC
GACAGCTGGATGAGAAGGTGTGGGGCCGCTGGCGCTTAGTAGAAGAGTCG
ATCGACCGGCCCCTTGCTGCTGATCTGGCCAAGTACGGGGCCAAGCTGAA
GCCGACGTATTCGAAGTTCGAGGAGGATTTATTTTTGGACATGTATAATG
GCCTCATGCTGACGAAGGAGGACACGTGTGCATTTGGCATGGGCTGGCAA
TGGACGAACTTGAAAGATGTGTACTCGGCCCCAACATTGCGGTTTCGGAT
CAACAGGAAGGAGGTGGGCATTGATTTCGACGAGTATGAATCGGTGGATG
ATATGCCTAGCGTCAGTTTTTACCTGGGCACGTTCAAGGATGGGGCGATG
GATGTCATAGAGGGGAAGATCCAGAGAAATAGAGATGCGACCCCGCCGGA
GGATGGGTCGGAAAAAAAAATCGTTACGGTGGGAACATTCACAATGGTCA
AGGTGGCGGCTTTGCAATTTTGAGAGGAATAAGAAAGCTGACGGAGGAGT
GTGAGCTGTCATTTAAGGGCAGTGGGGAGCGTTTGCTGCTGGATGAATTG
GGGCAACATTATGAGCAGCGGCTGCAGCTAAAAGATGAAGGAAAAAGAGA
CGCGATTAACAATGTAAATAGGCACTTTGCGGCTGTGAATGAGTTTTGTT
TGTATCTGATCTCTTTTTCAACTTAAAGTTATCACGTAACGAGAAACACT
ACGATAGTATTCGAATAGATATGTTGATGTATTTGACAATGCAGCAGGGA
GCAGATGAGAGTGGGGAGGAGAAACAAGATGAAGTTCTGGCCATTTTTCT
GAATTCGGTTCACGCTAGCGGCAATGTGGTGGAGGTCAGAGTTAGAAGAG
GAATGGATCGCTCACCTGTCAATTCATCCGATAAAACAAAATGAATAAAG
AGGGAGGAAAAGAGAACGCAGGAGTGAAAGTGGCACAAAGGCGTCCCGTA
CGGTGGAGGGAAGTGAGTGGCAAGGAAGGACGTACAAGAAAACATAAGCA
TTCACAAAAAAAAGGAAGGAGAGGAACAAGCTAGAAATTTCCAACAAATG
TTCACCAAGCCAGC

Coding sequence (CDS) from alignment at scaffold_3:524537..526900-

>mRNA_208 ID=mRNA_208|Name=jgi.p|Nanoce1779_2|576565|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_3:524537..526900- (Nannochloropsis oceanica)
ATGGGCCGGCTCTCCTCATTCCCCTTCTCGCTGCTGCTTTTCGTTTTTCT
CTTGGTGCTGCTGCCGGCAAAATTCAAGGCATTTACTATTTTCAGATATC
GCTCAACTCATCGCTTTTTAAGCACCTCTCCAATTCGTGCTTCAATCGAG
GAGCTCTACAGCGGCGAGCCCCTCGATCCCAACCGTCGCACCCTCCGCCT
CGCCTTTTTGGCCGCTTCCCGGCCCAAGAAACCCGCCAAAAGCGACAAGG
AACGACAGCTGGATGAGAAGGTGTGGGGCCGCTGGCGCTTAGTAGAAGAG
TCGATCGACCGGCCCCTTGCTGCTGATCTGGCCAAGTACGGGGCCAAGCT
GAAGCCGACGTATTCGAAGTTCGAGGAGGATTTATTTTTGGACATGTATA
ATGGCCTCATGCTGACGAAGGAGGACACGTGTGCATTTGGCATGGGCTGG
CAATGGACGAACTTGAAAGATGTGTACTCGGCCCCAACATTGCGGTTTCG
GATCAACAGGAAGGAGGTGGGCATTGATTTCGACGAGTATGAATCGGTGG
ATGATATGCCTAGCGTCAGTTTTTACCTGGGCACGTTCAAGGATGGGGCG
ATGGATGTCATAGAGGGGAAGATCCAGAGAAATAGAGATGCGACCCCGCC
GGAGGATGGGTCGGAAAAAAAAATCGTTACGGTGGGAACATTCACAATGG
TCAAGGTGGCGGCTTTGCAATTTTGA

Synonyms

Publications