jgi.p|Nanoce1779_2|578971, mRNA_2079 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578971
Unique Name	mRNA_2079
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2899
Alignment location	scaffold_4:740957..743855 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579057
Track	FilteredModels2
ProteinId	578971

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:740957..743855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578971	gene_2079	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578971	mRNA_2079-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2079	CDS_2079	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:740957..743855+
coding sequence from alignment at scaffold_4:740957..743855+

mRNA sequence

>mRNA_2079 ID=mRNA_2079|Name=jgi.p|Nanoce1779_2|578971|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp
ATCATCATCATCATCATCATCATCCTTCTTTTCCTCTTCTTCATCATCAT
ATTGATCCCTTTTCGTCGCTTTCACAGCCTTCTTATCCCCAACCGGGGCC
GGCACTTTTAGTCTTTCAGCCAGGTTTTTGGGCAAAGGCGTCGAAATCTC
AACGGCCAAAGGAGGAACCACAAAGGTAAGGTCAATGCTATCAAAGATGC
CAATGGAGAGATTGGCGCGAACCCGCACCTCTACAGGGGTCCCTTCAGGC
ATGCCAATGTCGAGTTTATTCTCCTCTAAAATGACCTGCAGGTCAATCGC
TTCTTCTGGCGTGCTTAGACTCAAGACCTCAATCAAATTTACTGCGACTT
TGCTGGCCGTGGTTTTGACCTGCTCCAACAATCCGTTGGCGATGCCGCGG
CCCACATCCATCACTTTGGCTAGGTCACGGATCTCCAAATCCAGCTCTCC
GCGGGGCAGCAGCACTTTGAGGCATTGGTGGGAGAGGATTCGCCCGTCCA
AAGCTTGGTTCAAACAGGCTCGGGTTTCCGAGGGGCGTAGGTTCGGACAA
TGCACGACTATGTCCTCGGCACATCCCCACTCGACGTCCGTATATGAAAT
GGGCACTCGCTGTTTCAGCCCTGGAGCCGAGTCCACTACACCCTCTGAAA
TGCGCAGACCCGAGGGCATTTTTTTTGAGAGGGCATCAATCAAGTTATGC
ACGGCCTCGGCCTGTGTCCTGTCAGAGATGAAGACCTCTGCCTCCAGGTG
CGTGAGCTCCCGGGAGAGTAAGGAGTCCAGCACAGTGACCGTTGCCAGGG
CCGTCGAATTCCAGTCGGCGAGCAAGAAATGCATAGATCCCCCGCGAATG
TCAAAGCGGCCTTGAAAGGCGTCAGGGTAGGTGAAATTTAAATATATCAG
CAGGCCCGTGTCGTTGCTGTGCACATAGGGGATGGATTTTACCTCCATGT
GCACGCGGGGCTTGATCGGGCTGTCGGCCGGCGTGAAGAACATCCGGTCC
TCATTTGCCTCCCCGTGCTGGATCAGCCGGTCCTCAAGGCTGGCTAGTTT
GATTACCACACCATTCAAAAAAGTCTGCATCACATTCCCCGGCTCAGCGG
GTCGAGAACCCACCAAGTCTATGTCTAGCTCCTCCAACTGCGACAACACA
TTCGGGAAAATCGTCTCCAGCTTTTCTATACCCCATTGTGAAAGCTCAGC
CTCAGTAAATAATACAACTGTCGCCTCCCCCTTGGGCGCAAACAACGACA
TGGCCTCCTTGCCGAACGTGTGAGCAGGCGCCCTGTCCCGCTCAAATCCT
TGTCGCGGCACTACTGGGGGTAGAGTGACTGGAAAGGCCTTGAAATGGCC
CACCAAATCGGGACCGGCAAATCCGTCCATGTCCAGAGCAGGCAATTCGC
CTTCGAGCGCAAAGGGCAGCATAAGCGTAATGTTGGCAAATGATCGCAGG
ATTGTATTGTTCAAGCTGAAAAGATCCACGGAATTTACACGAAAAACGTC
AGTCAAGGCGCCCATGTTGCTGAGGCTGCTGTCTGATGAGTCCTTGGTGC
TCAAATTTGTGTTCAGGGACAAACCAGCTGGTGGAACCATCAGCAGTGGA
TTGCGGAGCTGAGGACAGGTGGTATCAATAGGGGTGGCCGCAAGGTATAT
ATACATGGGTTCCTTTCCCAGGAAGCGCGTGGTGAAGTCCCGTGCGGTGG
CAGCTTGACCGGCCGTGTTGTTTAAGAGCCGCAAGTCCATTTTCATCCTA
AAGGGCTTGCCACCCGAGCTTTCGAGGCTCTGCAGCAAGAATTCATGCAA
CGTCACCCGGAAAAGCTTGTGGTCCTCGTCCAAGTCGTGTCGCTCCCGAA
ATCCCGATATGCTCCCTGGCTTGGTGCTGTTGTAGAAGTACATGTCCAAA
ATAGATTTTGGGAAAGAAGCCGAAGCCTTGAAGTCCCGCAGCCACACGTC
CACTTGCGGGGAGATAATGTATTCCCCTTCCTCGTCGTAAGCCAGGCGCA
CCTTCTCCACGCGGGTCACATAAGGGTAAGGATTGCCGGGGTCGGGGTCT
TTCAGAGGGTAATTTCCAAATTGACAAATGTACTTGCAGACGGACTCCTT
GCAGGGAAGGTGACCGCAAGTCAGGAAGAAATTTGAATTAATGGGGGCTT
TTATGCGCACTCGCAAAGGCGTCTGCACCACAACCTGGATCTTGGCCGTG
ATGGCCACCTGGAAATCGATCTCGTTCAACAGGTAGGCGAACATGATGGC
CAGCCCCGTGGTGTTGGTCACCACCATGATTGAATTGACTGTCAAATTCT
GCTCCCCTCCCTTCAGTACCATTGAAGATAGTGCATCCTTTTCCGTAAAG
GAAGAGGTAGCCACGTGCCCTGGCCCATGGTCACCGCGCAGAGCCACATC
GATGACTGCCGATTTGACATGAAGGCGAGAGTAGATATGGGGTAGCATGG
CTGTTGTCGTCAGGCGCACCGGCATGCGTTCAAAACTGCAAATGTTCTGA
AACTCGGCCAGAGCCAGATTAAAGCACGGGGAGTTGGGATTCATACAGGG
TATGAGGCGCAAAACGTCCACGAGGAGCACGCACATCATAATCGTCACAG
CCAGAAAGATGAACGAAAACCCCATGCACATGGGCGAACGCCGCTGCCAG
AGACCAGCCCCACATGCCCTGATCCTTCCCCTGACATCCAAGAGGCTCAG
GGACTGACTTTCGTCCAGATTGATCTCCCCTGCTCCACGCGACATCCATT
GCGTGCCGCGCCATTTTTGTAGCTTGTGTCGCAGCGAGTGCTGGCTCCGC
AACTCCTTGACGCGGAGTCCACCATCCCTCTCCTTTCTGCTGCCATCATC
GCCACCACCATGCCCTGCCCCAGCCGGGGACATGGCTGCGAAAATCTGT

protein sequence of jgi.p|Nanoce1779_2|578971

>mRNA_2079-protein ID=mRNA_2079-protein|Name=jgi.p|Nanoce1779_2|578971|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MLSKMPMERLARTRTSTGVPSGMPMSSLFSSKMTCRSIASSGVLRLKTSI
KFTATLLAVVLTCSNNPLAMPRPTSITLARSRISKSSSPRGSSTLRHWWE
RIRPSKAWFKQARVSEGRRFGQCTTMSSAHPHSTSVYEMGTRCFSPGAES
TTPSEMRRPEGIFFERASIKLCTASACVLSEMKTSASRCVSSRESKESST
VTVARAVEFQSASKKCIDPPRMSKRP*

mRNA from alignment at scaffold_4:740957..743855+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2079 ID=mRNA_2079|Name=jgi.p|Nanoce1779_2|578971|organism=Nannochloropsis oceanica|type=mRNA|length=2899bp|location=Sequence derived from alignment at scaffold_4:740957..743855+ (Nannochloropsis oceanica)
ATCATCATCATCATCATCATCATCCTTCTTTTCCTCTTCTTCATCATCAT
ATTGATCCCTTTTCGTCGCTTTCACAGCCTTCTTATCCCCAACCGGGGCC
GGCACTTTTAGTCTTTCAGCCAGGTTTTTGGGCAAAGGCGTCGAAATCTC
AACGGCCAAAGGAGGAACCACAAAGGTAAGGTCAATGCTATCAAAGATGC
CAATGGAGAGATTGGCGCGAACCCGCACCTCTACAGGGGTCCCTTCAGGC
ATGCCAATGTCGAGTTTATTCTCCTCTAAAATGACCTGCAGGTCAATCGC
TTCTTCTGGCGTGCTTAGACTCAAGACCTCAATCAAATTTACTGCGACTT
TGCTGGCCGTGGTTTTGACCTGCTCCAACAATCCGTTGGCGATGCCGCGG
CCCACATCCATCACTTTGGCTAGGTCACGGATCTCCAAATCCAGCTCTCC
GCGGGGCAGCAGCACTTTGAGGCATTGGTGGGAGAGGATTCGCCCGTCCA
AAGCTTGGTTCAAACAGGCTCGGGTTTCCGAGGGGCGTAGGTTCGGACAA
TGCACGACTATGTCCTCGGCACATCCCCACTCGACGTCCGTATATGAAAT
GGGCACTCGCTGTTTCAGCCCTGGAGCCGAGTCCACTACACCCTCTGAAA
TGCGCAGACCCGAGGGCATTTTTTTTGAGAGGGCATCAATCAAGTTATGC
ACGGCCTCGGCCTGTGTCCTGTCAGAGATGAAGACCTCTGCCTCCAGGTG
CGTGAGCTCCCGGGAGAGTAAGGAGTCCAGCACAGTGACCGTTGCCAGGG
CCGTCGAATTCCAGTCGGCGAGCAAGAAATGCATAGATCCCCCGCGAATG
TCAAAGCGGCCTTGAAAGGCGTCAGGGTAGGTGAAATTTAAATATATCAG
CAGGCCCGTGTCGTTGCTGTGCACATAGGGGATGGATTTTACCTCCATGT
GCACGCGGGGCTTGATCGGGCTGTCGGCCGGCGTGAAGAACATCCGGTCC
TCATTTGCCTCCCCGTGCTGGATCAGCCGGTCCTCAAGGCTGGCTAGTTT
GATTACCACACCATTCAAAAAAGTCTGCATCACATTCCCCGGCTCAGCGG
GTCGAGAACCCACCAAGTCTATGTCTAGCTCCTCCAACTGCGACAACACA
TTCGGGAAAATCGTCTCCAGCTTTTCTATACCCCATTGTGAAAGCTCAGC
CTCAGTAAATAATACAACTGTCGCCTCCCCCTTGGGCGCAAACAACGACA
TGGCCTCCTTGCCGAACGTGTGAGCAGGCGCCCTGTCCCGCTCAAATCCT
TGTCGCGGCACTACTGGGGGTAGAGTGACTGGAAAGGCCTTGAAATGGCC
CACCAAATCGGGACCGGCAAATCCGTCCATGTCCAGAGCAGGCAATTCGC
CTTCGAGCGCAAAGGGCAGCATAAGCGTAATGTTGGCAAATGATCGCAGG
ATTGTATTGTTCAAGCTGAAAAGATCCACGGAATTTACACGAAAAACGTC
AGTCAAGGCGCCCATGTTGCTGAGGCTGCTGTCTGATGAGTCCTTGGTGC
TCAAATTTGTGTTCAGGGACAAACCAGCTGGTGGAACCATCAGCAGTGGA
TTGCGGAGCTGAGGACAGGTGGTATCAATAGGGGTGGCCGCAAGGTATAT
ATACATGGGTTCCTTTCCCAGGAAGCGCGTGGTGAAGTCCCGTGCGGTGG
CAGCTTGACCGGCCGTGTTGTTTAAGAGCCGCAAGTCCATTTTCATCCTA
AAGGGCTTGCCACCCGAGCTTTCGAGGCTCTGCAGCAAGAATTCATGCAA
CGTCACCCGGAAAAGCTTGTGGTCCTCGTCCAAGTCGTGTCGCTCCCGAA
ATCCCGATATGCTCCCTGGCTTGGTGCTGTTGTAGAAGTACATGTCCAAA
ATAGATTTTGGGAAAGAAGCCGAAGCCTTGAAGTCCCGCAGCCACACGTC
CACTTGCGGGGAGATAATGTATTCCCCTTCCTCGTCGTAAGCCAGGCGCA
CCTTCTCCACGCGGGTCACATAAGGGTAAGGATTGCCGGGGTCGGGGTCT
TTCAGAGGGTAATTTCCAAATTGACAAATGTACTTGCAGACGGACTCCTT
GCAGGGAAGGTGACCGCAAGTCAGGAAGAAATTTGAATTAATGGGGGCTT
TTATGCGCACTCGCAAAGGCGTCTGCACCACAACCTGGATCTTGGCCGTG
ATGGCCACCTGGAAATCGATCTCGTTCAACAGGTAGGCGAACATGATGGC
CAGCCCCGTGGTGTTGGTCACCACCATGATTGAATTGACTGTCAAATTCT
GCTCCCCTCCCTTCAGTACCATTGAAGATAGTGCATCCTTTTCCGTAAAG
GAAGAGGTAGCCACGTGCCCTGGCCCATGGTCACCGCGCAGAGCCACATC
GATGACTGCCGATTTGACATGAAGGCGAGAGTAGATATGGGGTAGCATGG
CTGTTGTCGTCAGGCGCACCGGCATGCGTTCAAAACTGCAAATGTTCTGA
AACTCGGCCAGAGCCAGATTAAAGCACGGGGAGTTGGGATTCATACAGGG
TATGAGGCGCAAAACGTCCACGAGGAGCACGCACATCATAATCGTCACAG
CCAGAAAGATGAACGAAAACCCCATGCACATGGGCGAACGCCGCTGCCAG
AGACCAGCCCCACATGCCCTGATCCTTCCCCTGACATCCAAGAGGCTCAG
GGACTGACTTTCGTCCAGATTGATCTCCCCTGCTCCACGCGACATCCATT
GCGTGCCGCGCCATTTTTGTAGCTTGTGTCGCAGCGAGTGCTGGCTCCGC
AACTCCTTGACGCGGAGTCCACCATCCCTCTCCTTTCTGCTGCCATCATC
GCCACCACCATGCCCTGCCCCAGCCGGGGACATGGCTGCGAAAATCTGT

Coding sequence (CDS) from alignment at scaffold_4:740957..743855+

>mRNA_2079 ID=mRNA_2079|Name=jgi.p|Nanoce1779_2|578971|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_4:740957..743855+ (Nannochloropsis oceanica)
ATGCTATCAAAGATGCCAATGGAGAGATTGGCGCGAACCCGCACCTCTAC
AGGGGTCCCTTCAGGCATGCCAATGTCGAGTTTATTCTCCTCTAAAATGA
CCTGCAGGTCAATCGCTTCTTCTGGCGTGCTTAGACTCAAGACCTCAATC
AAATTTACTGCGACTTTGCTGGCCGTGGTTTTGACCTGCTCCAACAATCC
GTTGGCGATGCCGCGGCCCACATCCATCACTTTGGCTAGGTCACGGATCT
CCAAATCCAGCTCTCCGCGGGGCAGCAGCACTTTGAGGCATTGGTGGGAG
AGGATTCGCCCGTCCAAAGCTTGGTTCAAACAGGCTCGGGTTTCCGAGGG
GCGTAGGTTCGGACAATGCACGACTATGTCCTCGGCACATCCCCACTCGA
CGTCCGTATATGAAATGGGCACTCGCTGTTTCAGCCCTGGAGCCGAGTCC
ACTACACCCTCTGAAATGCGCAGACCCGAGGGCATTTTTTTTGAGAGGGC
ATCAATCAAGTTATGCACGGCCTCGGCCTGTGTCCTGTCAGAGATGAAGA
CCTCTGCCTCCAGGTGCGTGAGCTCCCGGGAGAGTAAGGAGTCCAGCACA
GTGACCGTTGCCAGGGCCGTCGAATTCCAGTCGGCGAGCAAGAAATGCAT
AGATCCCCCGCGAATGTCAAAGCGGCCTTGA

Synonyms

Publications