jgi.p|Nanoce1779_2|578955, mRNA_2076 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578955
Unique NamemRNA_2076
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1691
Alignment locationscaffold_4:727372..729062 -

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Properties
Property NameValue
TranscriptId579041
TrackFilteredModels2
ProteinId578955
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:727372..729062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578955gene_2076Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578955mRNA_2076-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2076CDS_2076Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2076 ID=mRNA_2076|Name=jgi.p|Nanoce1779_2|578955|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp
CAGCCTCGTTGCCGGCGAGCAAGATGATGTCCTCCTCCGCCTTCTGGCGG
ACGACCAAGGCCTCCGCCCGGGCTGCCATAGCGCTTCCCATCCACAGACG
ATGTGCACGTACTTCTCTGGCCACGTCGACCCGCATGACGGAGCCGCCGT
TTGAGGCAGCCACGGCCGCTGACCAAGACGCGATGGCGGCCTTTTGGATG
CCCTTCACCTCGAACAAAACCTTTAAGCAGTCCCCGCGCATCTTGACCAA
GGCCAAGGGCATGCACTACTGGACTGACGAGGGCCAAAAGGTCCTAGATG
GTACGGCCGGGCTGTGGTGCGTCAACGCAGGTCATTGTCACGAGCACATT
GTGGGCGCCATCCAGAAGCAAGCGGCCGCGATGGACTTCGCCCCGACATT
CAACATGGGCCATCCTTTGGCCTTTGAGTACGCGCACCGCCTCTGCAATG
AGCTCATGCCGGGCAGGGGTCTGGATCAGGTCTTCTTTACCATGTGCGGA
TCCACGTCGGTGGACACAGCATTGAAGATTGCATTAGCCTACCACAAGGC
CCGCGGGGAAGGTGGGCGATACCGGCTGATAGGCAGGGAACGCGCATATC
ACGGTGTGGGCTTTGGTGGCATTTCCGTGGGTGGCATGGTGCCGAACCGG
CGGACGTTTGGCCCCATGCTGCCTGGGGTGGACCATTTACGCACCACTTA
CGACCGTGAGCATCAGGCGTTCTCGAAGGGGCAGCCGGAGTGGGGAGCGC
ATTTGGCAGAGGATTTGGAACGTTTGGTAGGGCTGCATGATTCTTCGACG
ATTGCCGCTGTGATTGTGGAGCCCGTTTCTGGATCGGCGGGCGTGCTCGT
GCCACCTCATGGGTACTTGAAGCGACTGCGCGAGATTTGTGATACCCATG
GGATTTTGCTAATTTTTGACGAGGTCATCACTGCCTTCGGTAGGTTGGGA
AAAGGGATGGGCGCCGAGTACTTTGGCGTAGTGCCCGACATGGTGACGTG
TGCGAAGGGCTTGACCAATGCAGCAGTCCCGGCAGGGGCGACCTTCGTTC
AGAAGCATGTGTATGATGCATTCATGGATACGGCAAAGGCCCCGGGAATG
ATTGAGCTCTTCCACGGTTACACCTACTCGGGGCACCCTCTGGCGATGGC
CGCTGGTCTTGCCACTTTGGATGTGTACCAACAGGAAGGGTTATTTGAAC
GGTCTGCATTGATGGCACCGTATTGGGAGGATGCATTGCATGCATTGAAG
GGGCATCCGAATGTCATTGACATTCGGAATCTTGGGCTCATGGGCGCTGT
GGAATTGGCCCCGCGGCCAGGTAAGCCGGGTCAGCGGGCCTTCCAAATCT
TCACTACGGCTTTAAATAAGGGCGTGATGGTGCGTGTGACGGGTGATACC
ATTGCGTTGTCTCCGCCTCTCATCATTGAGAAGAGTCAGGTTGACCAGAT
TGTCGGCACCTTGAGCCAGACGCTGCATGAGGTTGCGTAAGAAAGAATGT
TGATGACGAAGGAGAACGGAAAGATGGAGTGAGTTTGTAAATAAGGAGCC
GAGACATTCAAAGACAAAGAAATAAGATACGAAGTTCTGAGAGGGACGAG
ATAAGAACGATTTTTAAATAAGGAGCTGAGACATTCAAAGACAAAGAATA
TACGAAGTTCTGAGAGGGACGAGATAAGAACGATTTTTAAA
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protein sequence of jgi.p|Nanoce1779_2|578955

>mRNA_2076-protein ID=mRNA_2076-protein|Name=jgi.p|Nanoce1779_2|578955|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MMSSSAFWRTTKASARAAIALPIHRRCARTSLATSTRMTEPPFEAATAAD
QDAMAAFWMPFTSNKTFKQSPRILTKAKGMHYWTDEGQKVLDGTAGLWCV
NAGHCHEHIVGAIQKQAAAMDFAPTFNMGHPLAFEYAHRLCNELMPGRGL
DQVFFTMCGSTSVDTALKIALAYHKARGEGGRYRLIGRERAYHGVGFGGI
SVGGMVPNRRTFGPMLPGVDHLRTTYDREHQAFSKGQPEWGAHLAEDLER
LVGLHDSSTIAAVIVEPVSGSAGVLVPPHGYLKRLREICDTHGILLIFDE
VITAFGRLGKGMGAEYFGVVPDMVTCAKGLTNAAVPAGATFVQKHVYDAF
MDTAKAPGMIELFHGYTYSGHPLAMAAGLATLDVYQQEGLFERSALMAPY
WEDALHALKGHPNVIDIRNLGLMGAVELAPRPGKPGQRAFQIFTTALNKG
VMVRVTGDTIALSPPLIIEKSQVDQIVGTLSQTLHEVA*
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mRNA from alignment at scaffold_4:727372..729062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2076 ID=mRNA_2076|Name=jgi.p|Nanoce1779_2|578955|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp|location=Sequence derived from alignment at scaffold_4:727372..729062- (Nannochloropsis oceanica)
CAGCCTCGTTGCCGGCGAGCAAGATGATGTCCTCCTCCGCCTTCTGGCGG
ACGACCAAGGCCTCCGCCCGGGCTGCCATAGCGCTTCCCATCCACAGACG
ATGTGCACGTACTTCTCTGGCCACGTCGACCCGCATGACGGAGCCGCCGT
TTGAGGCAGCCACGGCCGCTGACCAAGACGCGATGGCGGCCTTTTGGATG
CCCTTCACCTCGAACAAAACCTTTAAGCAGTCCCCGCGCATCTTGACCAA
GGCCAAGGGCATGCACTACTGGACTGACGAGGGCCAAAAGGTCCTAGATG
GTACGGCCGGGCTGTGGTGCGTCAACGCAGGTCATTGTCACGAGCACATT
GTGGGCGCCATCCAGAAGCAAGCGGCCGCGATGGACTTCGCCCCGACATT
CAACATGGGCCATCCTTTGGCCTTTGAGTACGCGCACCGCCTCTGCAATG
AGCTCATGCCGGGCAGGGGTCTGGATCAGGTCTTCTTTACCATGTGCGGA
TCCACGTCGGTGGACACAGCATTGAAGATTGCATTAGCCTACCACAAGGC
CCGCGGGGAAGGTGGGCGATACCGGCTGATAGGCAGGGAACGCGCATATC
ACGGTGTGGGCTTTGGTGGCATTTCCGTGGGTGGCATGGTGCCGAACCGG
CGGACGTTTGGCCCCATGCTGCCTGGGGTGGACCATTTACGCACCACTTA
CGACCGTGAGCATCAGGCGTTCTCGAAGGGGCAGCCGGAGTGGGGAGCGC
ATTTGGCAGAGGATTTGGAACGTTTGGTAGGGCTGCATGATTCTTCGACG
ATTGCCGCTGTGATTGTGGAGCCCGTTTCTGGATCGGCGGGCGTGCTCGT
GCCACCTCATGGGTACTTGAAGCGACTGCGCGAGATTTGTGATACCCATG
GGATTTTGCTAATTTTTGACGAGGTCATCACTGCCTTCGGTAGGTTGGGA
AAAGGGATGGGCGCCGAGTACTTTGGCGTAGTGCCCGACATGGTGACGTG
TGCGAAGGGCTTGACCAATGCAGCAGTCCCGGCAGGGGCGACCTTCGTTC
AGAAGCATGTGTATGATGCATTCATGGATACGGCAAAGGCCCCGGGAATG
ATTGAGCTCTTCCACGGTTACACCTACTCGGGGCACCCTCTGGCGATGGC
CGCTGGTCTTGCCACTTTGGATGTGTACCAACAGGAAGGGTTATTTGAAC
GGTCTGCATTGATGGCACCGTATTGGGAGGATGCATTGCATGCATTGAAG
GGGCATCCGAATGTCATTGACATTCGGAATCTTGGGCTCATGGGCGCTGT
GGAATTGGCCCCGCGGCCAGGTAAGCCGGGTCAGCGGGCCTTCCAAATCT
TCACTACGGCTTTAAATAAGGGCGTGATGGTGCGTGTGACGGGTGATACC
ATTGCGTTGTCTCCGCCTCTCATCATTGAGAAGAGTCAGGTTGACCAGAT
TGTCGGCACCTTGAGCCAGACGCTGCATGAGGTTGCGTAAGAAAGAATGT
TGATGACGAAGGAGAACGGAAAGATGGAGTGAGTTTGTAAATAAGGAGCC
GAGACATTCAAAGACAAAGAAATAAGATACGAAGTTCTGAGAGGGACGAG
ATAAGAACGATTTTTAAATAAGGAGCTGAGACATTCAAAGACAAAGAATA
TACGAAGTTCTGAGAGGGACGAGATAAGAACGATTTTTAAA
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Coding sequence (CDS) from alignment at scaffold_4:727372..729062-

>mRNA_2076 ID=mRNA_2076|Name=jgi.p|Nanoce1779_2|578955|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at scaffold_4:727372..729062- (Nannochloropsis oceanica)
ATGATGTCCTCCTCCGCCTTCTGGCGGACGACCAAGGCCTCCGCCCGGGC
TGCCATAGCGCTTCCCATCCACAGACGATGTGCACGTACTTCTCTGGCCA
CGTCGACCCGCATGACGGAGCCGCCGTTTGAGGCAGCCACGGCCGCTGAC
CAAGACGCGATGGCGGCCTTTTGGATGCCCTTCACCTCGAACAAAACCTT
TAAGCAGTCCCCGCGCATCTTGACCAAGGCCAAGGGCATGCACTACTGGA
CTGACGAGGGCCAAAAGGTCCTAGATGGTACGGCCGGGCTGTGGTGCGTC
AACGCAGGTCATTGTCACGAGCACATTGTGGGCGCCATCCAGAAGCAAGC
GGCCGCGATGGACTTCGCCCCGACATTCAACATGGGCCATCCTTTGGCCT
TTGAGTACGCGCACCGCCTCTGCAATGAGCTCATGCCGGGCAGGGGTCTG
GATCAGGTCTTCTTTACCATGTGCGGATCCACGTCGGTGGACACAGCATT
GAAGATTGCATTAGCCTACCACAAGGCCCGCGGGGAAGGTGGGCGATACC
GGCTGATAGGCAGGGAACGCGCATATCACGGTGTGGGCTTTGGTGGCATT
TCCGTGGGTGGCATGGTGCCGAACCGGCGGACGTTTGGCCCCATGCTGCC
TGGGGTGGACCATTTACGCACCACTTACGACCGTGAGCATCAGGCGTTCT
CGAAGGGGCAGCCGGAGTGGGGAGCGCATTTGGCAGAGGATTTGGAACGT
TTGGTAGGGCTGCATGATTCTTCGACGATTGCCGCTGTGATTGTGGAGCC
CGTTTCTGGATCGGCGGGCGTGCTCGTGCCACCTCATGGGTACTTGAAGC
GACTGCGCGAGATTTGTGATACCCATGGGATTTTGCTAATTTTTGACGAG
GTCATCACTGCCTTCGGTAGGTTGGGAAAAGGGATGGGCGCCGAGTACTT
TGGCGTAGTGCCCGACATGGTGACGTGTGCGAAGGGCTTGACCAATGCAG
CAGTCCCGGCAGGGGCGACCTTCGTTCAGAAGCATGTGTATGATGCATTC
ATGGATACGGCAAAGGCCCCGGGAATGATTGAGCTCTTCCACGGTTACAC
CTACTCGGGGCACCCTCTGGCGATGGCCGCTGGTCTTGCCACTTTGGATG
TGTACCAACAGGAAGGGTTATTTGAACGGTCTGCATTGATGGCACCGTAT
TGGGAGGATGCATTGCATGCATTGAAGGGGCATCCGAATGTCATTGACAT
TCGGAATCTTGGGCTCATGGGCGCTGTGGAATTGGCCCCGCGGCCAGGTA
AGCCGGGTCAGCGGGCCTTCCAAATCTTCACTACGGCTTTAAATAAGGGC
GTGATGGTGCGTGTGACGGGTGATACCATTGCGTTGTCTCCGCCTCTCAT
CATTGAGAAGAGTCAGGTTGACCAGATTGTCGGCACCTTGAGCCAGACGC
TGCATGAGGTTGCGTAA
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Synonyms
Publications