jgi.p|Nanoce1779_2|578954, mRNA_2075 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578954
Unique Name	mRNA_2075
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1724
Alignment location	scaffold_4:725638..727361 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579040
Track	FilteredModels2
ProteinId	578954

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:725638..727361 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578954	gene_2075	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578954	mRNA_2075-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2075	CDS_2075	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:725638..727361+
coding sequence from alignment at scaffold_4:725638..727361+

mRNA sequence

>mRNA_2075 ID=mRNA_2075|Name=jgi.p|Nanoce1779_2|578954|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp
GATTAACACATGTGTTTGGGTGAAGATACGTCGTGAGATCGCAAGCGAGA
AAAAAAAAGAAATATGCACCAACCGGGAATCGCACAGGCTTACGACAATC
TGAGCACAACCAAATCGCTCGATTGGTGACGGAAATCATATCGCAAGGAA
CCCGGGCCTAAACCTTGGGAAGGTTCAATCCTACCACTAGACTATTGGTG
CAGTTGATCAACGTTCGGGGTGACCAATACTATCTATATTTTCTACCCCA
AGTGCAAATCCTCTTTTTTATGCCTTTAAGTTGCCATGTTATCCCTCACC
ACAATACATACGACTCAAGAGAACCACCCAATTTTAGTAACAAAGGAAAG
TATACAGTATACAGGTAGGGTTAACATTTTTGGTGGCAATTGTGATTTCT
TATATTTGCGAAAGGGTTGTATCGACATCGAGACTCTTTCGTGGACAATT
TTTCAAGAAGAGGTCAGTTTCTGGCTCCTTCTCTGCCCGCATGATCATGC
CTTGATCTTCTATCACACGGGCAACACTGGTACCTGTACATTTGCGGGCT
TTTTTTGCCGTCGATTTGTGTCGTCTAGCTGCCCTACTATCCGAGATTCC
CCAGCCTTCTCAGGGGACACTATCTAACGCCCTATCAAAACCCCAAAAAA
TAATGGCAGGGCGTACCATGGTGCTGCTACCCTCACATAGCCTTATAAGC
GTGTTCACGATCAAGAACGGTGTGTTATCCCATTTACTGTGATAGGTTTT
CCGTCAAATAGGATTTTTTAGTCTCCTGCTCCCGCTTGCAGGCAACATCC
ACCATGCCTCGATGTTGCCAACTCGTCATGGGGCCCGCCGGTGTAGGCAA
GTCCACATACTGCAAGCTTTTACAAGAACATAGCACTGCCCAGCAGGGAC
CTGGGGCTCAGCGTCGCGCCGTGCACGTCATTAATCTTGACCCGGCGGCC
GAGGGGCCCTTCGCCTACTCGACACCAGAAGTAGACGTACGGGAGCTCAT
TACTGTAGACGACGTCATGGAAATGATGGATTTGGGGCCAAACGGTGCAT
TAGTGTATTGCATGGAATACTTGTTGGAAAATTTGGAATGGCTGGAGGAG
CGGCTGGGGTTGTTTGCGGAGGATGATTATTTGGTCTTTGATTGCCCGGG
CCAGGTTGAGCTGTATTCGCACATTCCTGTTATGAAAAATCTGGTGGAAT
TTCTCGTCAAAGGCCCGCTGGGCTTTGCTGTCTGTGGGATTTATTTGATC
GATGCGCATTTTATGATGGACCCGAGTAAATTTGTGGCGGGTGCGCTGCT
TTGTCTCTCGACCATGATTGCTCTAGAGATACCTCAAGTGAATGTTATTT
CCAAGGCAGACCTTGTTGGTAAGGAGGAGCTGGAACAAATACTGGAGATG
GATTCTGCGGCTATGGTGGCACGGATGGGTCATTTGGCTATGCATGTACG
TCTGCAGCCGTTGACAAGAATGATTGCCTCCGTGGTCGATGACTATACCT
TGGTTGGTTTTTTGCCTTTGGACCCAAACGAGGAGGATAGCTGGGACGCG
ATTTTGGCGCAGGCTGACATGGCGTTGCAGTATGGGGAGGACTTAGAGCC
ACGGGAGCCGCGAGATTATGTGGAGGGAGAGGGCGATGCGGAGGGGGAGG
AAGAGAGCGGCAATGGTGAACAAGTGTTCGAATAGAAAACAATATGGAAT
GAGGTTAAAAGTAAAACAAAGCAC

protein sequence of jgi.p|Nanoce1779_2|578954

>mRNA_2075-protein ID=mRNA_2075-protein|Name=jgi.p|Nanoce1779_2|578954|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MPRCCQLVMGPAGVGKSTYCKLLQEHSTAQQGPGAQRRAVHVINLDPAAE
GPFAYSTPEVDVRELITVDDVMEMMDLGPNGALVYCMEYLLENLEWLEER
LGLFAEDDYLVFDCPGQVELYSHIPVMKNLVEFLVKGPLGFAVCGIYLID
AHFMMDPSKFVAGALLCLSTMIALEIPQVNVISKADLVGKEELEQILEMD
SAAMVARMGHLAMHVRLQPLTRMIASVVDDYTLVGFLPLDPNEEDSWDAI
LAQADMALQYGEDLEPREPRDYVEGEGDAEGEEESGNGEQVFE*

mRNA from alignment at scaffold_4:725638..727361+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2075 ID=mRNA_2075|Name=jgi.p|Nanoce1779_2|578954|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at scaffold_4:725638..727361+ (Nannochloropsis oceanica)
GATTAACACATGTGTTTGGGTGAAGATACGTCGTGAGATCGCAAGCGAGA
AAAAAAAAGAAATATGCACCAACCGGGAATCGCACAGGCTTACGACAATC
TGAGCACAACCAAATCGCTCGATTGGTGACGGAAATCATATCGCAAGGAA
CCCGGGCCTAAACCTTGGGAAGGTTCAATCCTACCACTAGACTATTGGTG
CAGTTGATCAACGTTCGGGGTGACCAATACTATCTATATTTTCTACCCCA
AGTGCAAATCCTCTTTTTTATGCCTTTAAGTTGCCATGTTATCCCTCACC
ACAATACATACGACTCAAGAGAACCACCCAATTTTAGTAACAAAGGAAAG
TATACAGTATACAGGTAGGGTTAACATTTTTGGTGGCAATTGTGATTTCT
TATATTTGCGAAAGGGTTGTATCGACATCGAGACTCTTTCGTGGACAATT
TTTCAAGAAGAGGTCAGTTTCTGGCTCCTTCTCTGCCCGCATGATCATGC
CTTGATCTTCTATCACACGGGCAACACTGGTACCTGTACATTTGCGGGCT
TTTTTTGCCGTCGATTTGTGTCGTCTAGCTGCCCTACTATCCGAGATTCC
CCAGCCTTCTCAGGGGACACTATCTAACGCCCTATCAAAACCCCAAAAAA
TAATGGCAGGGCGTACCATGGTGCTGCTACCCTCACATAGCCTTATAAGC
GTGTTCACGATCAAGAACGGTGTGTTATCCCATTTACTGTGATAGGTTTT
CCGTCAAATAGGATTTTTTAGTCTCCTGCTCCCGCTTGCAGGCAACATCC
ACCATGCCTCGATGTTGCCAACTCGTCATGGGGCCCGCCGGTGTAGGCAA
GTCCACATACTGCAAGCTTTTACAAGAACATAGCACTGCCCAGCAGGGAC
CTGGGGCTCAGCGTCGCGCCGTGCACGTCATTAATCTTGACCCGGCGGCC
GAGGGGCCCTTCGCCTACTCGACACCAGAAGTAGACGTACGGGAGCTCAT
TACTGTAGACGACGTCATGGAAATGATGGATTTGGGGCCAAACGGTGCAT
TAGTGTATTGCATGGAATACTTGTTGGAAAATTTGGAATGGCTGGAGGAG
CGGCTGGGGTTGTTTGCGGAGGATGATTATTTGGTCTTTGATTGCCCGGG
CCAGGTTGAGCTGTATTCGCACATTCCTGTTATGAAAAATCTGGTGGAAT
TTCTCGTCAAAGGCCCGCTGGGCTTTGCTGTCTGTGGGATTTATTTGATC
GATGCGCATTTTATGATGGACCCGAGTAAATTTGTGGCGGGTGCGCTGCT
TTGTCTCTCGACCATGATTGCTCTAGAGATACCTCAAGTGAATGTTATTT
CCAAGGCAGACCTTGTTGGTAAGGAGGAGCTGGAACAAATACTGGAGATG
GATTCTGCGGCTATGGTGGCACGGATGGGTCATTTGGCTATGCATGTACG
TCTGCAGCCGTTGACAAGAATGATTGCCTCCGTGGTCGATGACTATACCT
TGGTTGGTTTTTTGCCTTTGGACCCAAACGAGGAGGATAGCTGGGACGCG
ATTTTGGCGCAGGCTGACATGGCGTTGCAGTATGGGGAGGACTTAGAGCC
ACGGGAGCCGCGAGATTATGTGGAGGGAGAGGGCGATGCGGAGGGGGAGG
AAGAGAGCGGCAATGGTGAACAAGTGTTCGAATAGAAAACAATATGGAAT
GAGGTTAAAAGTAAAACAAAGCAC

Coding sequence (CDS) from alignment at scaffold_4:725638..727361+

>mRNA_2075 ID=mRNA_2075|Name=jgi.p|Nanoce1779_2|578954|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_4:725638..727361+ (Nannochloropsis oceanica)
ATGCCTCGATGTTGCCAACTCGTCATGGGGCCCGCCGGTGTAGGCAAGTC
CACATACTGCAAGCTTTTACAAGAACATAGCACTGCCCAGCAGGGACCTG
GGGCTCAGCGTCGCGCCGTGCACGTCATTAATCTTGACCCGGCGGCCGAG
GGGCCCTTCGCCTACTCGACACCAGAAGTAGACGTACGGGAGCTCATTAC
TGTAGACGACGTCATGGAAATGATGGATTTGGGGCCAAACGGTGCATTAG
TGTATTGCATGGAATACTTGTTGGAAAATTTGGAATGGCTGGAGGAGCGG
CTGGGGTTGTTTGCGGAGGATGATTATTTGGTCTTTGATTGCCCGGGCCA
GGTTGAGCTGTATTCGCACATTCCTGTTATGAAAAATCTGGTGGAATTTC
TCGTCAAAGGCCCGCTGGGCTTTGCTGTCTGTGGGATTTATTTGATCGAT
GCGCATTTTATGATGGACCCGAGTAAATTTGTGGCGGGTGCGCTGCTTTG
TCTCTCGACCATGATTGCTCTAGAGATACCTCAAGTGAATGTTATTTCCA
AGGCAGACCTTGTTGGTAAGGAGGAGCTGGAACAAATACTGGAGATGGAT
TCTGCGGCTATGGTGGCACGGATGGGTCATTTGGCTATGCATGTACGTCT
GCAGCCGTTGACAAGAATGATTGCCTCCGTGGTCGATGACTATACCTTGG
TTGGTTTTTTGCCTTTGGACCCAAACGAGGAGGATAGCTGGGACGCGATT
TTGGCGCAGGCTGACATGGCGTTGCAGTATGGGGAGGACTTAGAGCCACG
GGAGCCGCGAGATTATGTGGAGGGAGAGGGCGATGCGGAGGGGGAGGAAG
AGAGCGGCAATGGTGAACAAGTGTTCGAATAG

Synonyms

Publications