jgi.p|Nanoce1779_2|578935, mRNA_2069 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578935
Unique NamemRNA_2069
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1174
Alignment locationscaffold_4:700693..702496 -

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Properties
Property NameValue
TranscriptId579021
TrackFilteredModels2
ProteinId578935
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:700693..702496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578935gene_2069Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578935mRNA_2069-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2069CDS_2069Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2069 ID=mRNA_2069|Name=jgi.p|Nanoce1779_2|578935|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp
AGGACCGTCGATATCGTGCTATCTACCGTTGGAGACCTTACCTCGTCCAT
CTGCACTCGCGCTAGGCGTTTCCTCTACCCAACCCTAACCACCGCTGCTG
TCGCGGCGTTGTGAGCAACAACGTGCCCCGCACACTCATCAGAAACCATG
ACAATGCGGGATGTGATTGGAGATTTCAAGACCGACATGCTTATCTCAGA
GATAAAAGAATTTGCTGAAAAGCTGAACAAGAATGGGCTGAAGAGCCCGC
GGCCGTGGCAGGAGTTTGGTAGCGGCTTCAGGCCCCCCAAGAACAAGCAG
GAGATTGAAGAGCGCCTGCAAACCAATTTTATGCTTTACCGAGCCAATTA
TATTGTGTTGCTGGGGGCTATCATGATCTGGTCTGTGATTATGTCTCCTT
TTAGCATGGCCGTATTGCTGGTGTGCGCAGGAGCGTTTGCCTTGCTGCTA
GGATGGCCGCGACCGTTAGAGGTCTTGGGGAGGGTGTTGACGCCTAGAGA
TAAGATGATGGTCGCTAGTGGATTCTCCTTCCTCTTTCTCCTCGCCACCG
GGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGGCATAATGGTGGCA
GTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCCATCGCAACAGCTT
GAACAAGGAGACCAATCTGTCAAACATCGGAAAGATCGCTCTTGAAGACA
TCGAGTCTCCCGGTCACGAGGATTGTGCCGTTAATTCGTACCATTCCGAG
AACGCCAAGCTTCGGGCCAATACCTGCACCAGCTCGAGTAACGGTCGAGA
CTAGAATCCTTTTCTTCTCTTACTCCTTCTCGCGCATACGTTCTGATTCA
AAATGTGACACAAAAACAAGAAAGTGAAAGCAAGAAAGGAGAGACGGAGA
CAGACACAGAAACAGAAAAACGGAGAGGGGAAGGGAGAGATGGTGTATAT
ATACATGTATAACACTTCTCTCTCTGCATATATATGTATGCTGGACTGTC
CGGAATGTCTGAGTGAGTGTTTATATGTGTCCTTTCATGCTATTGTATTC
TGGATGCTTGTGTGGAGTAAAGTAAGGCATGGTGTGCAAGCATGTGCGAA
GTAGTTAGTAGTGAAGACGTCTGTATGACATTGATACGGTAAGAAGCAAA
GGAAATTATATACTTTACATAGTA
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protein sequence of jgi.p|Nanoce1779_2|578935

>mRNA_2069-protein ID=mRNA_2069-protein|Name=jgi.p|Nanoce1779_2|578935|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MTMRDVIGDFKTDMLISEIKEFAEKLNKNGLKSPRPWQEFGSGFRPPKNK
QEIEERLQTNFMLYRANYIVLLGAIMIWSVIMSPFSMAVLLVCAGAFALL
LGWPRPLEVLGRVLTPRDKMMVASGFSFLFLLATGAMTLLIWSFLFGIMV
AVTHMAFKCRSPGHRNSLNKETNLSNIGKIALEDIESPGHEDCAVNSYHS
ENAKLRANTCTSSSNGRD*
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mRNA from alignment at scaffold_4:700693..702496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2069 ID=mRNA_2069|Name=jgi.p|Nanoce1779_2|578935|organism=Nannochloropsis oceanica|type=mRNA|length=1804bp|location=Sequence derived from alignment at scaffold_4:700693..702496- (Nannochloropsis oceanica)
AGGACCGTCGATATCGTGCTATCTACCGTTGGAGACCTTACCTCGTCCAT
CTGCACTCGCGCTAGGCGTTTCCTCTACCCAACCCTAACCACCGCTGCTG
TCGCGGCGTTGTGAGCAACAACGTGCCCCGCACACTCATCAGAAACCATG
ACAATGCGGGATGTGATTGGAGATGTAAGTGAATGGAGAGGCGGGATGTG
ACTGGAGATGTAAGTGGATGAGGAGAAATGAAATGTCATTTTTGTGGATT
GAGCGCAGCCCTCAACTCAAGGCCACGCAAATGAGAAATTTAGCATCCGA
GAATTTTGGTAAGCTTAGTGCTTGCTTCATCAAGACCGTCACTAGCACAT
GTATCATTCGCCGGTGCCCTCCGTACCCCCTGTTGCTCCGCACGCGCACG
TCCAAGCAAGTCCTTCAAACGCCAGTCCACCTGATACGACGCGCGCTAAC
ATAGCTCAATCCTACATCTTACCCACCACAAAAACAGTTCAAGACCGACA
TGCTTATCTCAGAGATAAAAGAATTTGCTGAAAAGCTGAACAAGAATGGG
CTGAAGAGCCCGCGGCCGTGGCAGGAGTTTGGTAGCGGCTTCAGGCCCCC
CAAGAACAAGCAGGAGATTGAAGAGCGCCTGCAAACCAATTTTATGCTTT
ACCGAGCCAATTATATTGTGTTGCTGGGGGCTATCATGATCTGGTCTGTG
ATTATGTCTCCTTTTAGCATGGCCGTATTGCTGGTGTGCGCAGGAGCGTT
TGCCTTGCTGCTAGGATGGCCGCGACCGTTAGAGGTCTTGGGGAGGGTGT
TGACGCCTAGAGATAAGATGATGGTCGCTAGTGGATGTAAGTTTACAGGG
GGGATAGGTACAAGAAAATGACGGCAGTCTGGTATCAAATCTTTCAATCT
CAAATTTTGTTCCAACTCCGCTCGCAGTCTCCTTCCTCTTTCTCCTCGCC
ACCGGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGGCATAATGGT
GGCAGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCCATCGCAACA
GCTTGAACAAGGAGACCAATCTGTCAAACATCGGAAAGATCGTAAGTTCC
TGAACTTTTCCTCATCTTATGCTTTGCCTTATAAGTTCCGGTCTCCCATA
CTTTGTTTTTTTTAATCTGATGTTCGCCTGCTGTCTTTTAAGTATTTCAC
AGAGATTACCCTATCTTCCTCCATTCCATCCTATCCGGGCGTCATTCATT
TTAAGACTTATGCGCTTCCTCTCCCTCCAAACATACGAACACGAAAATAC
AAATCATCCTTCGGCAGGCTCTTGAAGACATCGAGTCTCCCGGTCACGAG
GATTGTGCCGTTAATTCGTACCATTCCGAGAACGCCAAGCTTCGGGCCAA
TACCTGCACCAGCTCGAGTAACGGTCGAGACTAGAATCCTTTTCTTCTCT
TACTCCTTCTCGCGCATACGTTCTGATTCAAAATGTGACACAAAAACAAG
AAAGTGAAAGCAAGAAAGGAGAGACGGAGACAGACACAGAAACAGAAAAA
CGGAGAGGGGAAGGGAGAGATGGTGTATATATACATGTATAACACTTCTC
TCTCTGCATATATATGTATGCTGGACTGTCCGGAATGTCTGAGTGAGTGT
TTATATGTGTCCTTTCATGCTATTGTATTCTGGATGCTTGTGTGGAGTAA
AGTAAGGCATGGTGTGCAAGCATGTGCGAAGTAGTTAGTAGTGAAGACGT
CTGTATGACATTGATACGGTAAGAAGCAAAGGAAATTATATACTTTACAT
AGTA
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Coding sequence (CDS) from alignment at scaffold_4:700693..702496-

>mRNA_2069 ID=mRNA_2069|Name=jgi.p|Nanoce1779_2|578935|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_4:700693..702496- (Nannochloropsis oceanica)
GCTCTTGAAGACATCGAGTCTCCCGGTCACGAGGATTGTGCCGTTAATTC
GTACCATTCCGAGAACGCCAAGCTTCGGGCCAATACCTGCACCAGCTCGA
GTAACGGTCGAGACTAGTCTCCTTCCTCTTTCTCCTCGCCACCGGGGCTA
TGACCTTGCTCATCTGGAGCTTTTTGTTCGGCATAATGGTGGCAGTCACG
CACATGGCATTTAAGTGTCGCTCTCCTGGCCATCGCAACAGCTTGAACAA
GGAGACCAATCTGTCAAACATCGGAAAGATCTTCAAGACCGACATGCTTA
TCTCAGAGATAAAAGAATTTGCTGAAAAGCTGAACAAGAATGGGCTGAAG
AGCCCGCGGCCGTGGCAGGAGTTTGGTAGCGGCTTCAGGCCCCCCAAGAA
CAAGCAGGAGATTGAAGAGCGCCTGCAAACCAATTTTATGCTTTACCGAG
CCAATTATATTGTGTTGCTGGGGGCTATCATGATCTGGTCTGTGATTATG
TCTCCTTTTAGCATGGCCGTATTGCTGGTGTGCGCAGGAGCGTTTGCCTT
GCTGCTAGGATGGCCGCGACCGTTAGAGGTCTTGGGGAGGGTGTTGACGC
CTAGAGATAAGATGATGGTCGCTAGTGGATATGACAATGCGGGATGTGAT
TGGAGATGCTCTTGAAGACATCGAGTCTCCCGGTCACGAGGATTGTGCCG
TTAATTCGTACCATTCCGAGAACGCCAAGCTTCGGGCCAATACCTGCACC
AGCTCGAGTAACGGTCGAGACTAGTCTCCTTCCTCTTTCTCCTCGCCACC
GGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGGCATAATGGTGGC
AGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCCATCGCAACAGCT
TGAACAAGGAGACCAATCTGTCAAACATCGGAAAGATCTTCAAGACCGAC
ATGCTTATCTCAGAGATAAAAGAATTTGCTGAAAAGCTGAACAAGAATGG
GCTGAAGAGCCCGCGGCCGTGGCAGGAGTTTGGTAGCGGCTTCAGGCCCC
CCAAGAACAAGCAGGAGATTGAAGAGCGCCTGCAAACCAATTTTATGCTT
TACCGAGCCAATTATATTGTGTTGCTGGGGGCTATCATGATCTGGTCTGT
GATTATGTCTCCTTTTAGCATGGCCGTATTGCTGGTGTGCGCAGGAGCGT
TTGCCTTGCTGCTAGGATGGCCGCGACCGTTAGAGGTCTTGGGGAGGGTG
TTGACGCCTAGAGATAAGATGATGGTCGCTAGTGGATATGACAATGCGGG
ATGTGATTGGAGATGCTCTTGAAGACATCGAGTCTCCCGGTCACGAGGAT
TGTGCCGTTAATTCGTACCATTCCGAGAACGCCAAGCTTCGGGCCAATAC
CTGCACCAGCTCGAGTAACGGTCGAGACTAGTCTCCTTCCTCTTTCTCCT
CGCCACCGGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTCGGCATAA
TGGTGGCAGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGGCCATCGC
AACAGCTTGAACAAGGAGACCAATCTGTCAAACATCGGAAAGATCTTCAA
GACCGACATGCTTATCTCAGAGATAAAAGAATTTGCTGAAAAGCTGAACA
AGAATGGGCTGAAGAGCCCGCGGCCGTGGCAGGAGTTTGGTAGCGGCTTC
AGGCCCCCCAAGAACAAGCAGGAGATTGAAGAGCGCCTGCAAACCAATTT
TATGCTTTACCGAGCCAATTATATTGTGTTGCTGGGGGCTATCATGATCT
GGTCTGTGATTATGTCTCCTTTTAGCATGGCCGTATTGCTGGTGTGCGCA
GGAGCGTTTGCCTTGCTGCTAGGATGGCCGCGACCGTTAGAGGTCTTGGG
GAGGGTGTTGACGCCTAGAGATAAGATGATGGTCGCTAGTGGATATGACA
ATGCGGGATGTGATTGGAGATGCTCTTGAAGACATCGAGTCTCCCGGTCA
CGAGGATTGTGCCGTTAATTCGTACCATTCCGAGAACGCCAAGCTTCGGG
CCAATACCTGCACCAGCTCGAGTAACGGTCGAGACTAGTCTCCTTCCTCT
TTCTCCTCGCCACCGGGGCTATGACCTTGCTCATCTGGAGCTTTTTGTTC
GGCATAATGGTGGCAGTCACGCACATGGCATTTAAGTGTCGCTCTCCTGG
CCATCGCAACAGCTTGAACAAGGAGACCAATCTGTCAAACATCGGAAAGA
TCTTCAAGACCGACATGCTTATCTCAGAGATAAAAGAATTTGCTGAAAAG
CTGAACAAGAATGGGCTGAAGAGCCCGCGGCCGTGGCAGGAGTTTGGTAG
CGGCTTCAGGCCCCCCAAGAACAAGCAGGAGATTGAAGAGCGCCTGCAAA
CCAATTTTATGCTTTACCGAGCCAATTATATTGTGTTGCTGGGGGCTATC
ATGATCTGGTCTGTGATTATGTCTCCTTTTAGCATGGCCGTATTGCTGGT
GTGCGCAGGAGCGTTTGCCTTGCTGCTAGGATGGCCGCGACCGTTAGAGG
TCTTGGGGAGGGTGTTGACGCCTAGAGATAAGATGATGGTCGCTAGTGGA
TATGACAATGCGGGATGTGATTGGAGAT
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Synonyms
Publications