jgi.p|Nanoce1779_2|637101, mRNA_2065 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637101
Unique Name	mRNA_2065
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	702
Alignment location	scaffold_4:689347..690803 -

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Properties


Property Name	Value
TranscriptId	637187
Track	FilteredModels2
ProteinId	637101

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:689347..690803 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637101	gene_2065	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637101	mRNA_2065-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2065	CDS_2065	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:689347..690803-
coding sequence from alignment at scaffold_4:689347..690803-

mRNA sequence

>mRNA_2065 ID=mRNA_2065|Name=jgi.p|Nanoce1779_2|637101|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGCCGCGAAAAG
AATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTGTATTGTGGC
GTGTGCAGCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAGAACTCTA
CGCCGACTGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTATTGCCTG
AGGGTAAAACGCTGGAGGATATGCTGGCGAAATTGAGCCTTAAAAATGGC
AGCAGGGACGGTGTAGGTTCAGCTAAGCCTAGTGGTGATGCTGCAGCAGA
GGGCGAGGGTTGCGCAGGGGATGTTGGGGAGGGCAAGAAGAAGAGGGGTG
GGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGGGGGAAGGTG
ACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAACGGTCATCAC
GGGCCTCGACACGTACCGAGAGTTGAAACTCAAGGACATTGCCAAGGCCA
TGGGCAAGTTGTTCGCATCGGGGGCCTCAGTGTCTGACACGGCCAGCGGA
GGCAAGGAGATTGTCATCCAGGGCGACGTGATCGAGGGCGTGGCCGCCAT
GCTCGAGAACAAGTACCAGGTGCCGCGGGAAAACATTATTCTCAAGTCGT
AG

protein sequence of jgi.p|Nanoce1779_2|637101

>mRNA_2065-protein ID=mRNA_2065-protein|Name=jgi.p|Nanoce1779_2|637101|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MADVIEEKPSAVAAAKRMGGDGQEEEEEEEEEEEEELVPLVRRSGILYCG
VCSIPPEFCEYNPPELYADCLQWQAEHHPELLPEGKTLEDMLAKLSLKNG
SRDGVGSAKPSGDAAAEGEGCAGDVGEGKKKRGGPKGIKKKDTAGSGGKV
TIMRMSRNKRKSITVITGLDTYRELKLKDIAKAMGKLFASGASVSDTASG
GKEIVIQGDVIEGVAAMLENKYQVPRENIILKS*

mRNA from alignment at scaffold_4:689347..690803-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2065 ID=mRNA_2065|Name=jgi.p|Nanoce1779_2|637101|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_4:689347..690803- (Nannochloropsis oceanica)
ATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGCCGCGAAAAG
AATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTGTATTGTGGC
GGTGAGTACAGGGGACGGCAGTTGAAAAGAAGAGGGGCTTGCGGGCGCCG
ACAACCATGCCATTCTCATAATCTCTTCCCTCTCCCTTTTTCAGTGTGCA
GCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAGAACTCTACGCCGAC
TGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTATTGCCTGAGGTAAG
CAATAGTGAATAGAGACAGATCTGCATTTGTTGATGGACGAATAGATGGG
TATCCATAACTTCATGGGTATGTGCCTCACGTCTCCCTTCTATTTCCTTC
CTTTTTTAGGGTAAAACGCTGGAGGATATGCTGGCGAAATTGAGCCTTAA
AAATGGCAGCAGGGACGGTGTAGGTTCAGCTAAGCCTAGTGGTGATGCTG
CAGCAGAGGGCGAGGGTTGCGCAGGGGATGTTGGGGAGGTCAGTCTTTTT
GAGGGGGCAGTCGGATGTTCATTTCCTAAGATATATCACACATTCTCTTT
CTTGCTCATTTATTTTCCTGAACAGGAAGGGGAAGTCGATGATGAAGGTA
AACAACTTGCAAATTAAGAGGGAATGTCTGTGTGTACGAAAAAGCGCAAA
TCACTTTGTTCTAATCAGTCCCCCGCACTCATAGAGGGCAAGAAGAAGAG
GGGTGGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGGGGGA
AGGTGACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAACGGTC
ATCACGGGCCTCGACACGTACCGAGGTGAGGGCGAGAAGGGAGGGGAACG
GAGGCGAGATATGTAGCTTATGAGTGGAATGTGGCAAGGCGTCTGTAGAT
TTCCATCGCATGCGCATCTTGAGTCATACTTGTTCTTAAGGAACACACAA
CACCCGTGTGTGAATGTACATAAATACATATGTGGACATATATAAATATA
TGTAAATATATTTATATATATATTCCTCTCGTACCACCACTCTCAGAGTT
GAAACTCAAGGACATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGG
CCTCAGTGTCTGACACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGC
GACGTGATCGAGGGCGTGGCCGCCATGCTCGAGAACAAGTACCAGGTAAG
GGAACGGGGAGAAAAGGGAGGGAATAGGGGCCATTTTCGGGGGCATTTGC
AATAAAAAAGAAGCTTGCTTTTAAGTCGAATACAAAATCGCATTTCCTCC
CCTCCCCTCGTTTTTGTTCTTTAGGTGCCGCGGGAAAACATTATTCTCAA
GTCGTAG

Coding sequence (CDS) from alignment at scaffold_4:689347..690803-

>mRNA_2065 ID=mRNA_2065|Name=jgi.p|Nanoce1779_2|637101|organism=Nannochloropsis oceanica|type=CDS|length=4212bp|location=Sequence derived from alignment at scaffold_4:689347..690803- (Nannochloropsis oceanica)
GTGCCGCGGGAAAACATTATTCTCAAGTCGTAGAGTTGAAACTCAAGGAC
ATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGGCCTCAGTGTCTGA
CACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGCGACGTGATCGAGG
GCGTGGCCGCCATGCTCGAGAACAAGTACCAGGGCAAGAAGAAGAGGGGT
GGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGGGGGAAGGT
GACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAACGGTCATCA
CGGGCCTCGACACGTACCGAGGGTAAAACGCTGGAGGATATGCTGGCGAA
ATTGAGCCTTAAAAATGGCAGCAGGGACGGTGTAGGTTCAGCTAAGCCTA
GTGGTGATGCTGCAGCAGAGGGCGAGGGTTGCGCAGGGGATGTTGGGGAG
TGTGCAGCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAGAACTCTAC
GCCGACTGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTATTGCCTGA
GATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGCCGCGAAAA
GAATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTGTATTGTGG
CGGTGCCGCGGGAAAACATTATTCTCAAGTCGTAGAGTTGAAACTCAAGG
ACATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGGCCTCAGTGTCT
GACACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGCGACGTGATCGA
GGGCGTGGCCGCCATGCTCGAGAACAAGTACCAGGGCAAGAAGAAGAGGG
GTGGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGGGGGAAG
GTGACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAACGGTCAT
CACGGGCCTCGACACGTACCGAGGGTAAAACGCTGGAGGATATGCTGGCG
AAATTGAGCCTTAAAAATGGCAGCAGGGACGGTGTAGGTTCAGCTAAGCC
TAGTGGTGATGCTGCAGCAGAGGGCGAGGGTTGCGCAGGGGATGTTGGGG
AGTGTGCAGCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAGAACTCT
ACGCCGACTGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTATTGCCT
GAGATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGCCGCGAA
AAGAATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTGTATTGT
GGCGGTGCCGCGGGAAAACATTATTCTCAAGTCGTAGAGTTGAAACTCAA
GGACATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGGCCTCAGTGT
CTGACACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGCGACGTGATC
GAGGGCGTGGCCGCCATGCTCGAGAACAAGTACCAGGGCAAGAAGAAGAG
GGGTGGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGGGGGA
AGGTGACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAACGGTC
ATCACGGGCCTCGACACGTACCGAGGGTAAAACGCTGGAGGATATGCTGG
CGAAATTGAGCCTTAAAAATGGCAGCAGGGACGGTGTAGGTTCAGCTAAG
CCTAGTGGTGATGCTGCAGCAGAGGGCGAGGGTTGCGCAGGGGATGTTGG
GGAGTGTGCAGCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAGAACT
CTACGCCGACTGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTATTGC
CTGAGATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGCCGCG
AAAAGAATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTGTATT
GTGGCGGTGCCGCGGGAAAACATTATTCTCAAGTCGTAGAGTTGAAACTC
AAGGACATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGGCCTCAGT
GTCTGACACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGCGACGTGA
TCGAGGGCGTGGCCGCCATGCTCGAGAACAAGTACCAGGGCAAGAAGAAG
AGGGGTGGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGGGG
GAAGGTGACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAACGG
TCATCACGGGCCTCGACACGTACCGAGGGTAAAACGCTGGAGGATATGCT
GGCGAAATTGAGCCTTAAAAATGGCAGCAGGGACGGTGTAGGTTCAGCTA
AGCCTAGTGGTGATGCTGCAGCAGAGGGCGAGGGTTGCGCAGGGGATGTT
GGGGAGTGTGCAGCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAGAA
CTCTACGCCGACTGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTATT
GCCTGAGATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGCCG
CGAAAAGAATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTGTA
TTGTGGCGGTGCCGCGGGAAAACATTATTCTCAAGTCGTAGAGTTGAAAC
TCAAGGACATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGGCCTCA
GTGTCTGACACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGCGACGT
GATCGAGGGCGTGGCCGCCATGCTCGAGAACAAGTACCAGGGCAAGAAGA
AGAGGGGTGGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAGGG
GGGAAGGTGACCATCATGCGCATGTCACGTAACAAACGGAAATCCATAAC
GGTCATCACGGGCCTCGACACGTACCGAGGGTAAAACGCTGGAGGATATG
CTGGCGAAATTGAGCCTTAAAAATGGCAGCAGGGACGGTGTAGGTTCAGC
TAAGCCTAGTGGTGATGCTGCAGCAGAGGGCGAGGGTTGCGCAGGGGATG
TTGGGGAGTGTGCAGCATTCCGCCCGAGTTCTGTGAGTACAATCCCCCAG
AACTCTACGCCGACTGCCTCCAATGGCAAGCCGAGCATCATCCTGAGTTA
TTGCCTGAGATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCCGC
CGCGAAAAGAATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCCTG
TATTGTGGCGGTGCCGCGGGAAAACATTATTCTCAAGTCGTAGAGTTGAA
ACTCAAGGACATTGCCAAGGCCATGGGCAAGTTGTTCGCATCGGGGGCCT
CAGTGTCTGACACGGCCAGCGGAGGCAAGGAGATTGTCATCCAGGGCGAC
GTGATCGAGGGCGTGGCCGCCATGCTCGAGAACAAGTACCAGGGCAAGAA
GAAGAGGGGTGGGCCCAAGGGCATCAAGAAAAAGGATACTGCGGGATCAG
GGGGGAAGGTGACCATCATGCGCATGTCACGTAACAAACGGAAATCCATA
ACGGTCATCACGGGCCTCGACACGTACCGAGGGTAAAACGCTGGAGGATA
TGCTGGCGAAATTGAGCCTTAAAAATGGCAGCAGGGACGGTGTAGGTTCA
GCTAAGCCTAGTGGTGATGCTGCAGCAGAGGGCGAGGGTTGCGCAGGGGA
TGTTGGGGAGTGTGCAGCATTCCGCCCGAGTTCTGTGAGTACAATCCCCC
AGAACTCTACGCCGACTGCCTCCAATGGCAAGCCGAGCATCATCCTGAGT
TATTGCCTGAGATGGCAGACGTCATTGAGGAGAAGCCGTCCGCCGTGGCC
GCCGCGAAAAGAATGGGAGGCGATGGGCAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAATTGGTACCGCTGGTGCGGCGTTCTGGCATCC
TGTATTGTGGCG

Synonyms

Publications