jgi.p|Nanoce1779_2|578914, mRNA_2064 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578914
Unique Name	mRNA_2064
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3049
Alignment location	scaffold_4:685586..688634 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579000
Track	FilteredModels2
ProteinId	578914

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:685586..688634 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578914	gene_2064	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578914	mRNA_2064-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2064	CDS_2064	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:685586..688634-
coding sequence from alignment at scaffold_4:685586..688634-

mRNA sequence

>mRNA_2064 ID=mRNA_2064|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp
ACAGGCAATTGATCAGCCCCACATCCACAAGTACAAATTAGCCCAGGAAA
TCAGCTAGACGCCCGCTGACCGACGACGACGCTCCTTCAGATGAAAATGC
AGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGTCATGTGTACC
GCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTTTTATGGCGGC
ACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCAGCGGTGAGCC
GGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGCAGGTGCAGGA
CGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCGAGGAATGGGA
GAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGACGTGGGTCGAG
AAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTGGTCGATGGAC
ACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAGGGCAAGAATT
GTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGACTTACAGAACC
TGGTGATTTCTAGCCCGTTGGCGCCCGCTCAGGCTCATCACATGCCGTTT
CCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAACACGAGAAGGC
TGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAAGAGGTGTTGG
TCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTTTTATAGCCGC
CCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGGTGAAGCTGTC
CGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTGGGCCTGGCAA
GTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCATGCTGCACTG
GTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGATTTCTGCAGC
GGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGGGAGGGAGGAC
GGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCATTCGAACAGG
GTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAACGGCGTCGAT
GGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCACTAGTGCAGG
AGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTGCAAGGGGTAT
GTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTTCGATCCGTAA
CGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACGCCGGTGCGGT
CTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGTGGTAGTGGGG
GGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGGTCATGTCGAC
GGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGATGACCGGTTGA
TCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGAAGTAGACCAG
GGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAGTGGCGTGCGA
TGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTCATTGTGTGGG
ATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCATGTCGATGGG
GATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGGTGTACGATGG
CACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGATCCCCTCCTC
GCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTCTGGCCTCGGT
GGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTCCTGGTGCAAG
GGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCTCGCCCTTCGT
CTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGCCCCTCATCAG
CGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGAGTGGCGGGCC
TCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGCCATGGTCCTA
CTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGTGCATAAGCAG
CAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCGTTGATCAAGG
GGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAAGAGAAGGGCC
AAGAAGGGGAAGGGTCCGCGTAAAGAGGAATCCCAGGCCTTGTGTAACAT
GTGATTTTGTGATTTATGCTTCCTTCTCCAGCCATCGCGGCCCTCTTTCT
CCTCTCTCCTTTGCAAATAACCCACTCCGCTACATACGTTGTACATTTGT
GTCTCATTGTGTTATAATATGAAAAGTACTTTTGCCATGTCCCCCCACTA
CCCACCCAGTCTTTTCGTCCCCTCCCTTTTATTTTTGGAGGGGGTTGGTG
GCAGGAAAAAAGAGGGAGAAGTAGAAGATAAATACAAATGAAAGGAACAA
GAAGAAGACAGGAAAAGGAGAAAATGAAAGGGATAGTGCTGGCAATGACA
CACACAAGCAAGGCAATAATTTGACCTGGCAAAGGAAGGCATGGGAAGCG
AGTTGCAGAATCCGAAGAAGGAAACTCAAGACGCATCTATGGTATCTATC
CAAACAGAGAGAGACGGGGAGGTCGCTCAATGACAGGAAGGAAGAGACAG
ACATCCAGCAGCAGGACACTATTTACCATATACTCGTGCCCGCGTGTTTT
TGCTGTGTACCTGTTAAGAAGAGAGTGAAGAGAGGAAAAGAAATAATCTA
TACTTGGACAGGCAGGGAGAAGACGAACGAAAGGGGGGAGGGAGGAAACA
AAGGTGGGCAGCAAGCGCCCGTTTGTAAATAGGGAAGGAAAAGACATAAT
GCTTCTCCTCATCCTTTTCACCTCGCTATTATTACTGTTAAAAAGATAGA
CGGACAAAAAATGAAGGAATGCGCAGTTGTTCAGTACAGGGCTTAGCGAA
GCAGACACAAACGCAAACAAAGAAGAAATCAAACAGCTAGGCGGTGAGA

protein sequence of jgi.p|Nanoce1779_2|578914

>mRNA_2064-protein ID=mRNA_2064-protein|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MKMQGTRKGGGGAKTHVMCTAATFILLAGSAQSFMAAPASLMHSFLQESS
AVSRQTLGARVTTGTAAGAGRKRRSLTLAARGSEEWENASGGNSGSSGND
VGRENSWATQAPGDDDWSMDTPRIHYLREMEKLGQELYDMTGFKTEGAAD
LQNLVISSPLAPAQAHHMPFPPPSRAALAAASEHEKAVREIVMQEETRRQ
EVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMV
GLASALDGQELFRAPAHAALVTALDYDANSGWMISAADDGVVKVFRDLGG
EGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGA
LVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRT
PVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFD
DRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSV
IVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYAIG
SPPRKASGSSAGGAAASGLGGLGNDGKSRRSSSPGARGSRGSGGGQHRRS
RPSSPSSSSFPSRKDGAPHQRQGGPPSPSDDSASGGPRQNSPFLGGWILG
HGPTDLEGVGGVGMGGVHKQQEPAADFSSADGVVDQGEDSNNAAASEESK
EKGQEGEGSA*

mRNA from alignment at scaffold_4:685586..688634-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2064 ID=mRNA_2064|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=mRNA|length=3049bp|location=Sequence derived from alignment at scaffold_4:685586..688634- (Nannochloropsis oceanica)
ACAGGCAATTGATCAGCCCCACATCCACAAGTACAAATTAGCCCAGGAAA
TCAGCTAGACGCCCGCTGACCGACGACGACGCTCCTTCAGATGAAAATGC
AGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGTCATGTGTACC
GCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTTTTATGGCGGC
ACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCAGCGGTGAGCC
GGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGCAGGTGCAGGA
CGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCGAGGAATGGGA
GAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGACGTGGGTCGAG
AAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTGGTCGATGGAC
ACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAGGGCAAGAATT
GTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGACTTACAGAACC
TGGTGATTTCTAGCCCGTTGGCGCCCGCTCAGGCTCATCACATGCCGTTT
CCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAACACGAGAAGGC
TGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAAGAGGTGTTGG
TCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTTTTATAGCCGC
CCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGGTGAAGCTGTC
CGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTGGGCCTGGCAA
GTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCATGCTGCACTG
GTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGATTTCTGCAGC
GGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGGGAGGGAGGAC
GGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCATTCGAACAGG
GTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAACGGCGTCGAT
GGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCACTAGTGCAGG
AGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTGCAAGGGGTAT
GTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTTCGATCCGTAA
CGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACGCCGGTGCGGT
CTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGTGGTAGTGGGG
GGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGGTCATGTCGAC
GGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGATGACCGGTTGA
TCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGAAGTAGACCAG
GGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAGTGGCGTGCGA
TGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTCATTGTGTGGG
ATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCATGTCGATGGG
GATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGGTGTACGATGG
CACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGATCCCCTCCTC
GCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTCTGGCCTCGGT
GGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTCCTGGTGCAAG
GGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCTCGCCCTTCGT
CTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGCCCCTCATCAG
CGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGAGTGGCGGGCC
TCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGCCATGGTCCTA
CTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGTGCATAAGCAG
CAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCGTTGATCAAGG
GGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAAGAGAAGGGCC
AAGAAGGGGAAGGGTCCGCGTAAAGAGGAATCCCAGGCCTTGTGTAACAT
GTGATTTTGTGATTTATGCTTCCTTCTCCAGCCATCGCGGCCCTCTTTCT
CCTCTCTCCTTTGCAAATAACCCACTCCGCTACATACGTTGTACATTTGT
GTCTCATTGTGTTATAATATGAAAAGTACTTTTGCCATGTCCCCCCACTA
CCCACCCAGTCTTTTCGTCCCCTCCCTTTTATTTTTGGAGGGGGTTGGTG
GCAGGAAAAAAGAGGGAGAAGTAGAAGATAAATACAAATGAAAGGAACAA
GAAGAAGACAGGAAAAGGAGAAAATGAAAGGGATAGTGCTGGCAATGACA
CACACAAGCAAGGCAATAATTTGACCTGGCAAAGGAAGGCATGGGAAGCG
AGTTGCAGAATCCGAAGAAGGAAACTCAAGACGCATCTATGGTATCTATC
CAAACAGAGAGAGACGGGGAGGTCGCTCAATGACAGGAAGGAAGAGACAG
ACATCCAGCAGCAGGACACTATTTACCATATACTCGTGCCCGCGTGTTTT
TGCTGTGTACCTGTTAAGAAGAGAGTGAAGAGAGGAAAAGAAATAATCTA
TACTTGGACAGGCAGGGAGAAGACGAACGAAAGGGGGGAGGGAGGAAACA
AAGGTGGGCAGCAAGCGCCCGTTTGTAAATAGGGAAGGAAAAGACATAAT
GCTTCTCCTCATCCTTTTCACCTCGCTATTATTACTGTTAAAAAGATAGA
CGGACAAAAAATGAAGGAATGCGCAGTTGTTCAGTACAGGGCTTAGCGAA
GCAGACACAAACGCAAACAAAGAAGAAATCAAACAGCTAGGCGGTGAGA

Coding sequence (CDS) from alignment at scaffold_4:685586..688634-

>mRNA_2064 ID=mRNA_2064|Name=jgi.p|Nanoce1779_2|578914|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_4:685586..688634- (Nannochloropsis oceanica)
ATGAAAATGCAGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGT
CATGTGTACCGCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTT
TTATGGCGGCACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCA
GCGGTGAGCCGGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGC
AGGTGCAGGACGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCG
AGGAATGGGAGAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGAC
GTGGGTCGAGAAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTG
GTCGATGGACACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAG
GGCAAGAATTGTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGAC
TTACAGAACCTGGTGATTTCTAGCCCGTTGGCGCCCGCTCAGGCTCATCA
CATGCCGTTTCCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAAC
ACGAGAAGGCTGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAA
GAGGTGTTGGTCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTT
TTATAGCCGCCCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGG
TGAAGCTGTCCGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTG
GGCCTGGCAAGTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCA
TGCTGCACTGGTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGA
TTTCTGCAGCGGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGG
GAGGGAGGACGGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCA
TTCGAACAGGGTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAA
CGGCGTCGATGGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCA
CTAGTGCAGGAGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTG
CAAGGGGTATGTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTT
CGATCCGTAACGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACG
CCGGTGCGGTCTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGT
GGTAGTGGGGGGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGG
TCATGTCGACGGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGAT
GACCGGTTGATCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGA
AGTAGACCAGGGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAG
TGGCGTGCGATGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTC
ATTGTGTGGGATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCA
TGTCGATGGGGATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGG
TGTACGATGGCACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGA
TCCCCTCCTCGCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTC
TGGCCTCGGTGGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTC
CTGGTGCAAGGGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCT
CGCCCTTCGTCTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGC
CCCTCATCAGCGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGA
GTGGCGGGCCTCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGC
CATGGTCCTACTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGT
GCATAAGCAGCAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCG
TTGATCAAGGGGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAA
GAGAAGGGCCAAGAAGGGGAAGGGTCCGCGTAA

Synonyms

Publications