Properties
| Property Name | Value |
|---|
| TranscriptId | 578975 |
| Track | FilteredModels2 |
| ProteinId | 578889 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:657126..658899 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2056 ID=mRNA_2056|Name=jgi.p|Nanoce1779_2|578889|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
AGGCACAGGCAAAACAAAGATGCCACCAACTGACGGTTTCGCCTCAGAGT
CCTTCTCCTGCCCCATGATCATGCTGTTGTGGTCGTGGGTAATCTTTTGC
TGTACCAGCATGATCCTCCACCATTTCCCATCCCTGCTGCACCGCCCGAA
GCGGCGTATTCAGAGCAACAGCACAGTTGCTGAGACTAGGCCGGCGGTGG
CGGCTACCATGCCTGCAGAGCGTCATAATCCGGGTGTTACACCCGTATCA
GATGTAAAGGTGGCGAGTCGCCCGATCGACCCACGCTTTTGCGTGCAGCA
CATTGCCCATAGAGGGTGTCGTAAAGAAGGCATACCTGAAAATACGCTGA
CGGCTTTTGCTCACGCCGTTGCCGCCGGGTGCGACGTGATTGAACTGGAT
GTGTGGTTGACAATAGATGAGCGGGTGGTCGTCTTTCACGACTCAGATTT
GGAGCGCATGTGCGGGACACAAGCCGCAGCAGCAGCTGCAGCGACAGTGG
CTGCTAGGAGAGCAGTTTCCGCCAATGCGAAGCAGGAGCAAGGGCAGAAG
GAAAACATAGGCGTATCGGATTTGAATTATGATGAGCTACCAAAAATCAA
ATTAAACGGTGAGCATTGGGCGGTAAATGACAAGAACCGGAAGCACGCCT
GCAGGATCCCTCTCTTTTCCGAAGTCCTCGAACTCATCCCACTTGACAAG
CCTATGATCGTCGAGGTTAAGCAGCGGGACCCGATTCTCATCCGGAAGGT
GCACGACATGATCCTCAACAAGGGTCGGCGTGATCAGACAATTTGGTTTA
GTCTTGCAGAAGATATCAATGCAGACCTCCGCGCCTATGACCCCACCATC
CCAAATATTACCTCCGTCTTGGGCATGCTTAAGTGCATTTTGCTCTATTA
CACGGGCCTCCTGCCTTTCGTTCGCCTGGATTCAGACATTCTCGGCATTC
CCGTTGATCACGTTGACTATGCCCGTGTCCGAGAGCAAAAAGCTCTTAAA
GCCCTCCCTGATGCGCTGTGCTGGGTCTTAGCTTTTGTCCTAGGCGGAAA
GCCGCCATTGGCGCTCATCCCCCCCGGACTTTTCAAGCATTTGCGGGCGC
GGGGAATCCCAATTTTTTTCTTAGGAGTCAACGATGAGGAGAACCTGAAG
GTGGCTGAGTGGGCAGGATCGACCGCTGTGCTGACCGACAGGCCCCAATG
GCTAAGAAAATGCATGGCGGATGGTAAAGTGGCTTTGAAGCGACTCTGAG
TGTGGATTGGAGTGTGTGTATATGCTGTACCTGTACCTTAACGTGTGCAA
TAGGGGAAGGGAAAGAGCTACAAGATGCGAGACAATAAAAGACTGAATTG
AAATCATGG back to topprotein sequence of jgi.p|Nanoce1779_2|578889 >mRNA_2056-protein ID=mRNA_2056-protein|Name=jgi.p|Nanoce1779_2|578889|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MPPTDGFASESFSCPMIMLLWSWVIFCCTSMILHHFPSLLHRPKRRIQSN
STVAETRPAVAATMPAERHNPGVTPVSDVKVASRPIDPRFCVQHIAHRGC
RKEGIPENTLTAFAHAVAAGCDVIELDVWLTIDERVVVFHDSDLERMCGT
QAAAAAAATVAARRAVSANAKQEQGQKENIGVSDLNYDELPKIKLNGEHW
AVNDKNRKHACRIPLFSEVLELIPLDKPMIVEVKQRDPILIRKVHDMILN
KGRRDQTIWFSLAEDINADLRAYDPTIPNITSVLGMLKCILLYYTGLLPF
VRLDSDILGIPVDHVDYARVREQKALKALPDALCWVLAFVLGGKPPLALI
PPGLFKHLRARGIPIFFLGVNDEENLKVAEWAGSTAVLTDRPQWLRKCMA
DGKVALKRL* back to topmRNA from alignment at scaffold_4:657126..658899- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2056 ID=mRNA_2056|Name=jgi.p|Nanoce1779_2|578889|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp|location=Sequence derived from alignment at scaffold_4:657126..658899- (Nannochloropsis oceanica)
AGGCACAGGCAAAACAAAGATGCCACCAACTGACGGTTTCGCCTCAGAGT
CCTTCTCCTGCCCCATGATCATGCTGTTGTGGTCGTGGGTAATCTTTTGC
TGTACCAGCATGATCCTCCACCATTTCCCATCCCTGCTGCACCGCCCGAA
GCGGCGTATTCAGAGCAACAGCACAGTTGCTGAGACTAGGCCGGCGGTGG
CGGCTACCATGCCTGCAGAGCGTCATAATCCGGGTGTTACACCCGTATCA
GATGTAAAGGTGGCGAGTCGCCCGATCGACCCACGCTTTTGCGTGCAGCA
CATTGCCCATAGAGGGTGTCGTAAAGAAGGCATACCTGAAAATACGCTGA
CGGCTTTTGCTCACGCCGTTGCCGCCGGGTGCGACGTGATTGAACTGGAT
GTGTGGTTGACAATAGATGAGCGGGTGGTCGTCTTTCACGACTCAGATTT
GGAGCGCATGTGCGGGACACAAGCCGCAGCAGCAGCTGCAGCGACAGTGG
CTGCTAGGAGAGCAGTTTCCGCCAATGCGAAGCAGGAGCAAGGGCAGAAG
GAAAACATAGGCGTATCGGATTTGAATTATGATGAGCTACCAAAAATCAA
ATTAAACGGTGAGCATTGGGCGGTAAATGACAAGAACCGGAAGCACGCCT
GCAGGATCCCTCTCTTTTCCGAAGTCCTCGAACTCATCCCACTTGACAAG
CCTATGATCGTCGAGGTTAAGCAGCGGGACCCGGTGAGTAAAAGATAGGA
TAGAGAAATCGTATGTATGGGCTTATAAAACGACATTGCACTACGGAGGG
CATGGAATGCTCCTTTCAATCTGTTACTCCCATTCATCTTCTCTTCTCGT
TCATTAGATTCTCATCCGGAAGGTGCACGACATGATCCTCAACAAGGGTC
GGCGTGATCAGACAATTTGGTTTAGTCTTGCAGAAGATATCAATGCAGAC
CTCCGCGCCTATGACCCCACCATCCCAAATATTACCTCCGTCTTGGGCAT
GCTTAAGGTAAATAGATCAGCCTGTGTGTGCATCTCCCTGTCCCCACTTC
TTTCCTCCTTGTCGCCCGTGTGGCGTCAACTTTTTCTGAGGAATAAAAGC
GCTCACTCACTCCTCTTATTTACATTCAACCACAAAATGTTCAGTGCATT
TTGCTCTATTACACGGGCCTCCTGCCTTTCGTTCGCCTGGATTCAGACAT
TCTCGGCATTCCCGTTGATCACGTTGACTATGCCCGTGTCCGAGAGCAAA
AAGCTCTTAAAGCCCTCCCTGATGCGCTGTGCTGGGTCTTAGCTTTTGTC
CTAGGCGGAAAGCCGCCATTGGCGCTCATCCCCCCCGGACTTTTCAAGCA
TTTGCGGGCGCGGGGAATCCCAATTTTTTTCTTAGGAGTCAACGATGAGG
AGAACCTGAAGGTAAGAGAAGCGGGAGGCGGGATATCGCGGAAATCAGTT
GTACCTATTCTTTCCGTTGAGAAGTCATTAAAAACAGCTTCCCTTGTATG
CCGTGTGCAGATTGTGACTGACTTTTCTCCTATCGCGCGTTGTCACTTTT
GCCCCCCTCGTACAGGTGGCTGAGTGGGCAGGATCGACCGCTGTGCTGAC
CGACAGGCCCCAATGGCTAAGAAAATGCATGGCGGATGGTAAAGTGGCTT
TGAAGCGACTCTGAGTGTGGATTGGAGTGTGTGTATATGCTGTACCTGTA
CCTTAACGTGTGCAATAGGGGAAGGGAAAGAGCTACAAGATGCGAGACAA
TAAAAGACTGAATTGAAATCATGG back to topCoding sequence (CDS) from alignment at scaffold_4:657126..658899- >mRNA_2056 ID=mRNA_2056|Name=jgi.p|Nanoce1779_2|578889|organism=Nannochloropsis oceanica|type=CDS|length=4920bp|location=Sequence derived from alignment at scaffold_4:657126..658899- (Nannochloropsis oceanica)
GTGGCTGAGTGGGCAGGATCGACCGCTGTGCTGACCGACAGGCCCCAATG
GCTAAGAAAATGCATGGCGGATGGTAAAGTGGCTTTGAAGCGACTCTGAT
GCATTTTGCTCTATTACACGGGCCTCCTGCCTTTCGTTCGCCTGGATTCA
GACATTCTCGGCATTCCCGTTGATCACGTTGACTATGCCCGTGTCCGAGA
GCAAAAAGCTCTTAAAGCCCTCCCTGATGCGCTGTGCTGGGTCTTAGCTT
TTGTCCTAGGCGGAAAGCCGCCATTGGCGCTCATCCCCCCCGGACTTTTC
AAGCATTTGCGGGCGCGGGGAATCCCAATTTTTTTCTTAGGAGTCAACGA
TGAGGAGAACCTGAAGATTCTCATCCGGAAGGTGCACGACATGATCCTCA
ACAAGGGTCGGCGTGATCAGACAATTTGGTTTAGTCTTGCAGAAGATATC
AATGCAGACCTCCGCGCCTATGACCCCACCATCCCAAATATTACCTCCGT
CTTGGGCATGCTTAAGATGCCACCAACTGACGGTTTCGCCTCAGAGTCCT
TCTCCTGCCCCATGATCATGCTGTTGTGGTCGTGGGTAATCTTTTGCTGT
ACCAGCATGATCCTCCACCATTTCCCATCCCTGCTGCACCGCCCGAAGCG
GCGTATTCAGAGCAACAGCACAGTTGCTGAGACTAGGCCGGCGGTGGCGG
CTACCATGCCTGCAGAGCGTCATAATCCGGGTGTTACACCCGTATCAGAT
GTAAAGGTGGCGAGTCGCCCGATCGACCCACGCTTTTGCGTGCAGCACAT
TGCCCATAGAGGGTGTCGTAAAGAAGGCATACCTGAAAATACGCTGACGG
CTTTTGCTCACGCCGTTGCCGCCGGGTGCGACGTGATTGAACTGGATGTG
TGGTTGACAATAGATGAGCGGGTGGTCGTCTTTCACGACTCAGATTTGGA
GCGCATGTGCGGGACACAAGCCGCAGCAGCAGCTGCAGCGACAGTGGCTG
CTAGGAGAGCAGTTTCCGCCAATGCGAAGCAGGAGCAAGGGCAGAAGGAA
AACATAGGCGTATCGGATTTGAATTATGATGAGCTACCAAAAATCAAATT
AAACGGTGAGCATTGGGCGGTAAATGACAAGAACCGGAAGCACGCCTGCA
GGATCCCTCTCTTTTCCGAAGTCCTCGAACTCATCCCACTTGACAAGCCT
ATGATCGTCGAGGTTAAGCAGCGGGACCCGGTGGCTGAGTGGGCAGGATC
GACCGCTGTGCTGACCGACAGGCCCCAATGGCTAAGAAAATGCATGGCGG
ATGGTAAAGTGGCTTTGAAGCGACTCTGATGCATTTTGCTCTATTACACG
GGCCTCCTGCCTTTCGTTCGCCTGGATTCAGACATTCTCGGCATTCCCGT
TGATCACGTTGACTATGCCCGTGTCCGAGAGCAAAAAGCTCTTAAAGCCC
TCCCTGATGCGCTGTGCTGGGTCTTAGCTTTTGTCCTAGGCGGAAAGCCG
CCATTGGCGCTCATCCCCCCCGGACTTTTCAAGCATTTGCGGGCGCGGGG
AATCCCAATTTTTTTCTTAGGAGTCAACGATGAGGAGAACCTGAAGATTC
TCATCCGGAAGGTGCACGACATGATCCTCAACAAGGGTCGGCGTGATCAG
ACAATTTGGTTTAGTCTTGCAGAAGATATCAATGCAGACCTCCGCGCCTA
TGACCCCACCATCCCAAATATTACCTCCGTCTTGGGCATGCTTAAGATGC
CACCAACTGACGGTTTCGCCTCAGAGTCCTTCTCCTGCCCCATGATCATG
CTGTTGTGGTCGTGGGTAATCTTTTGCTGTACCAGCATGATCCTCCACCA
TTTCCCATCCCTGCTGCACCGCCCGAAGCGGCGTATTCAGAGCAACAGCA
CAGTTGCTGAGACTAGGCCGGCGGTGGCGGCTACCATGCCTGCAGAGCGT
CATAATCCGGGTGTTACACCCGTATCAGATGTAAAGGTGGCGAGTCGCCC
GATCGACCCACGCTTTTGCGTGCAGCACATTGCCCATAGAGGGTGTCGTA
AAGAAGGCATACCTGAAAATACGCTGACGGCTTTTGCTCACGCCGTTGCC
GCCGGGTGCGACGTGATTGAACTGGATGTGTGGTTGACAATAGATGAGCG
GGTGGTCGTCTTTCACGACTCAGATTTGGAGCGCATGTGCGGGACACAAG
CCGCAGCAGCAGCTGCAGCGACAGTGGCTGCTAGGAGAGCAGTTTCCGCC
AATGCGAAGCAGGAGCAAGGGCAGAAGGAAAACATAGGCGTATCGGATTT
GAATTATGATGAGCTACCAAAAATCAAATTAAACGGTGAGCATTGGGCGG
TAAATGACAAGAACCGGAAGCACGCCTGCAGGATCCCTCTCTTTTCCGAA
GTCCTCGAACTCATCCCACTTGACAAGCCTATGATCGTCGAGGTTAAGCA
GCGGGACCCGGTGGCTGAGTGGGCAGGATCGACCGCTGTGCTGACCGACA
GGCCCCAATGGCTAAGAAAATGCATGGCGGATGGTAAAGTGGCTTTGAAG
CGACTCTGATGCATTTTGCTCTATTACACGGGCCTCCTGCCTTTCGTTCG
CCTGGATTCAGACATTCTCGGCATTCCCGTTGATCACGTTGACTATGCCC
GTGTCCGAGAGCAAAAAGCTCTTAAAGCCCTCCCTGATGCGCTGTGCTGG
GTCTTAGCTTTTGTCCTAGGCGGAAAGCCGCCATTGGCGCTCATCCCCCC
CGGACTTTTCAAGCATTTGCGGGCGCGGGGAATCCCAATTTTTTTCTTAG
GAGTCAACGATGAGGAGAACCTGAAGATTCTCATCCGGAAGGTGCACGAC
ATGATCCTCAACAAGGGTCGGCGTGATCAGACAATTTGGTTTAGTCTTGC
AGAAGATATCAATGCAGACCTCCGCGCCTATGACCCCACCATCCCAAATA
TTACCTCCGTCTTGGGCATGCTTAAGATGCCACCAACTGACGGTTTCGCC
TCAGAGTCCTTCTCCTGCCCCATGATCATGCTGTTGTGGTCGTGGGTAAT
CTTTTGCTGTACCAGCATGATCCTCCACCATTTCCCATCCCTGCTGCACC
GCCCGAAGCGGCGTATTCAGAGCAACAGCACAGTTGCTGAGACTAGGCCG
GCGGTGGCGGCTACCATGCCTGCAGAGCGTCATAATCCGGGTGTTACACC
CGTATCAGATGTAAAGGTGGCGAGTCGCCCGATCGACCCACGCTTTTGCG
TGCAGCACATTGCCCATAGAGGGTGTCGTAAAGAAGGCATACCTGAAAAT
ACGCTGACGGCTTTTGCTCACGCCGTTGCCGCCGGGTGCGACGTGATTGA
ACTGGATGTGTGGTTGACAATAGATGAGCGGGTGGTCGTCTTTCACGACT
CAGATTTGGAGCGCATGTGCGGGACACAAGCCGCAGCAGCAGCTGCAGCG
ACAGTGGCTGCTAGGAGAGCAGTTTCCGCCAATGCGAAGCAGGAGCAAGG
GCAGAAGGAAAACATAGGCGTATCGGATTTGAATTATGATGAGCTACCAA
AAATCAAATTAAACGGTGAGCATTGGGCGGTAAATGACAAGAACCGGAAG
CACGCCTGCAGGATCCCTCTCTTTTCCGAAGTCCTCGAACTCATCCCACT
TGACAAGCCTATGATCGTCGAGGTTAAGCAGCGGGACCCGGTGGCTGAGT
GGGCAGGATCGACCGCTGTGCTGACCGACAGGCCCCAATGGCTAAGAAAA
TGCATGGCGGATGGTAAAGTGGCTTTGAAGCGACTCTGATGCATTTTGCT
CTATTACACGGGCCTCCTGCCTTTCGTTCGCCTGGATTCAGACATTCTCG
GCATTCCCGTTGATCACGTTGACTATGCCCGTGTCCGAGAGCAAAAAGCT
CTTAAAGCCCTCCCTGATGCGCTGTGCTGGGTCTTAGCTTTTGTCCTAGG
CGGAAAGCCGCCATTGGCGCTCATCCCCCCCGGACTTTTCAAGCATTTGC
GGGCGCGGGGAATCCCAATTTTTTTCTTAGGAGTCAACGATGAGGAGAAC
CTGAAGATTCTCATCCGGAAGGTGCACGACATGATCCTCAACAAGGGTCG
GCGTGATCAGACAATTTGGTTTAGTCTTGCAGAAGATATCAATGCAGACC
TCCGCGCCTATGACCCCACCATCCCAAATATTACCTCCGTCTTGGGCATG
CTTAAGATGCCACCAACTGACGGTTTCGCCTCAGAGTCCTTCTCCTGCCC
CATGATCATGCTGTTGTGGTCGTGGGTAATCTTTTGCTGTACCAGCATGA
TCCTCCACCATTTCCCATCCCTGCTGCACCGCCCGAAGCGGCGTATTCAG
AGCAACAGCACAGTTGCTGAGACTAGGCCGGCGGTGGCGGCTACCATGCC
TGCAGAGCGTCATAATCCGGGTGTTACACCCGTATCAGATGTAAAGGTGG
CGAGTCGCCCGATCGACCCACGCTTTTGCGTGCAGCACATTGCCCATAGA
GGGTGTCGTAAAGAAGGCATACCTGAAAATACGCTGACGGCTTTTGCTCA
CGCCGTTGCCGCCGGGTGCGACGTGATTGAACTGGATGTGTGGTTGACAA
TAGATGAGCGGGTGGTCGTCTTTCACGACTCAGATTTGGAGCGCATGTGC
GGGACACAAGCCGCAGCAGCAGCTGCAGCGACAGTGGCTGCTAGGAGAGC
AGTTTCCGCCAATGCGAAGCAGGAGCAAGGGCAGAAGGAAAACATAGGCG
TATCGGATTTGAATTATGATGAGCTACCAAAAATCAAATTAAACGGTGAG
CATTGGGCGGTAAATGACAAGAACCGGAAGCACGCCTGCAGGATCCCTCT
CTTTTCCGAAGTCCTCGAACTCATCCCACTTGACAAGCCTATGATCGTCG
AGGTTAAGCAGCGGGACCCG back to top
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