jgi.p|Nanoce1779_2|578878, mRNA_2054 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578878
Unique NamemRNA_2054
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_4:652251..653201 +

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Properties
Property NameValue
TranscriptId578964
TrackFilteredModels2
ProteinId578878
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:652251..653201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578878gene_2054Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578878mRNA_2054-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2054CDS_2054Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2054 ID=mRNA_2054|Name=jgi.p|Nanoce1779_2|578878|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
GGGGGGTTAATGTGACGACAGCCAGCAGGAGCAGTAGCAGTGGGGGGGGT
GGAAATGTTTTCACGAATTTTTTCAACCGACAATCGGTTGGTGGGGTAGA
GGCAAACAAAGGAGGGAATTTGACAGCAGCAGCGGGAAATCAGGGAGTCG
CAGACGGGTATGAAACGATGGACTCGAGCTCTGGCGCAGCGAAATTTGAC
GAGACTGTCCCGTTGGAGGTTGCTGCTGTTGCTGCTGTTGATGCCTCGCC
GACGCCACCGGTGATGGCGCGGGCGTTGTACGATAATGAACCAGAGGACG
AGACGGAGTTGGGATTCGTGGTGGGCGACTTGTTGGAAATTCTGACGAAG
GATGATTCGGGGTGGTGGGAGGCAAGGTTGAATGGAAAGGTGGGGTCGAT
CCCGGCAAACTATGTGGAGTTGCTTGTGTAAGGAGTTGGAGATGAAGGAG
GAGGAAAAGAGAATAAAAGAGGAGGAAGAGGAGGAGGAGATGAAGGAAGA
GGAAGCGGAGAAGAAGGGGGAGAGGAGGGCTTATAAATTGTACTACCTCG
TCGATTATGTGTGTGATGGATTGTCGTAAACAACAAAGAGAGAGAGAGAG
AGATAGAGAGAGAGAGAGAGAAAGAGCGTATTTTTTCCATCCGGTCGGAG
TCTCTGAGCTGCAGCCTGCTGGGTGCCATCGAAGAAAAATCAGAGAAAGG
AGAAAAGTCCAGTTTGCCTCGTGAACCGTGGTGGTAATTTTCTTCTTCTG
TGTTTTTTGAAAGGGCAGGGCGCTTCGCTGACAGCGACAAAGAAACATAA
TTTTATTCGCGAACACTTTGTATGTAAAATGAGTCTCGCAGAGAATGTTC
GAAGGAAGAAGGAAATGAGAGAGAAATGAAAAGAACAACAAAACAATTTA
AGTAAAAAGAAAGAGAGGACGAGAAGAAGGAAAATGCATGCGATTTTTCA
A
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protein sequence of jgi.p|Nanoce1779_2|578878

>mRNA_2054-protein ID=mRNA_2054-protein|Name=jgi.p|Nanoce1779_2|578878|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MDSSSGAAKFDETVPLEVAAVAAVDASPTPPVMARALYDNEPEDETELGF
VVGDLLEILTKDDSGWWEARLNGKVGSIPANYVELLV*
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mRNA from alignment at scaffold_4:652251..653201+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2054 ID=mRNA_2054|Name=jgi.p|Nanoce1779_2|578878|organism=Nannochloropsis oceanica|type=mRNA|length=951bp|location=Sequence derived from alignment at scaffold_4:652251..653201+ (Nannochloropsis oceanica)
GGGGGGTTAATGTGACGACAGCCAGCAGGAGCAGTAGCAGTGGGGGGGGT
GGAAATGTTTTCACGAATTTTTTCAACCGACAATCGGTTGGTGGGGTAGA
GGCAAACAAAGGAGGGAATTTGACAGCAGCAGCGGGAAATCAGGGAGTCG
CAGACGGGTATGAAACGATGGACTCGAGCTCTGGCGCAGCGAAATTTGAC
GAGACTGTCCCGTTGGAGGTTGCTGCTGTTGCTGCTGTTGATGCCTCGCC
GACGCCACCGGTGATGGCGCGGGCGTTGTACGATAATGAACCAGAGGACG
AGACGGAGTTGGGATTCGTGGTGGGCGACTTGTTGGAAATTCTGACGAAG
GATGATTCGGGGTGGTGGGAGGCAAGGTTGAATGGAAAGGTGGGGTCGAT
CCCGGCAAACTATGTGGAGTTGCTTGTGTAAGGAGTTGGAGATGAAGGAG
GAGGAAAAGAGAATAAAAGAGGAGGAAGAGGAGGAGGAGATGAAGGAAGA
GGAAGCGGAGAAGAAGGGGGAGAGGAGGGCTTATAAATTGTACTACCTCG
TCGATTATGTGTGTGATGGATTGTCGTAAACAACAAAGAGAGAGAGAGAG
AGATAGAGAGAGAGAGAGAGAAAGAGCGTATTTTTTCCATCCGGTCGGAG
TCTCTGAGCTGCAGCCTGCTGGGTGCCATCGAAGAAAAATCAGAGAAAGG
AGAAAAGTCCAGTTTGCCTCGTGAACCGTGGTGGTAATTTTCTTCTTCTG
TGTTTTTTGAAAGGGCAGGGCGCTTCGCTGACAGCGACAAAGAAACATAA
TTTTATTCGCGAACACTTTGTATGTAAAATGAGTCTCGCAGAGAATGTTC
GAAGGAAGAAGGAAATGAGAGAGAAATGAAAAGAACAACAAAACAATTTA
AGTAAAAAGAAAGAGAGGACGAGAAGAAGGAAAATGCATGCGATTTTTCA
A
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Coding sequence (CDS) from alignment at scaffold_4:652251..653201+

>mRNA_2054 ID=mRNA_2054|Name=jgi.p|Nanoce1779_2|578878|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_4:652251..653201+ (Nannochloropsis oceanica)
ATGGACTCGAGCTCTGGCGCAGCGAAATTTGACGAGACTGTCCCGTTGGA
GGTTGCTGCTGTTGCTGCTGTTGATGCCTCGCCGACGCCACCGGTGATGG
CGCGGGCGTTGTACGATAATGAACCAGAGGACGAGACGGAGTTGGGATTC
GTGGTGGGCGACTTGTTGGAAATTCTGACGAAGGATGATTCGGGGTGGTG
GGAGGCAAGGTTGAATGGAAAGGTGGGGTCGATCCCGGCAAACTATGTGG
AGTTGCTTGTGTAA
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Synonyms
Publications