jgi.p|Nanoce1779_2|668775, mRNA_2053 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668775
Unique Name	mRNA_2053
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1493
Alignment location	scaffold_4:650079..652250 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668861
Track	FilteredModels2
ProteinId	668775

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:650079..652250 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668775	gene_2053	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668775	mRNA_2053-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2053	CDS_2053	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:650079..652250+
coding sequence from alignment at scaffold_4:650079..652250+

mRNA sequence

>mRNA_2053 ID=mRNA_2053|Name=jgi.p|Nanoce1779_2|668775|organism=Nannochloropsis oceanica|type=mRNA|length=1493bp
CGCACGCTCGCGCAACGGCTCCTCAAATTTGTTTGTTGCTGGGCTTCCTG
CCTCCAACTCAACCAAACAGCAGCACAAGCACACAATCGCAATCTTCACG
ATGATAAACAACGACTTCCCCAAGTTATGCAAGTGGTGGGGGTGGCGGCT
CTGATCACCATCAGTCCCACGACACAACATATGCATCATTACTTGGGCCA
TGGGCCTCACCCTTCGTCCTGCTATTTTGTCCTAATCCACTGCGTACACC
CACATCTAACGTAGGGCACCGAGGACCACCACAAGCACGCGAACAAGCAC
GTTGATATTTTTTCACGACCAGTAACAGCCAATCATGGACGAGGCTCCTC
CCAAACCTACTGTCATGAAGAAGATGAAGGCCATCAAGCGCCGAAGTGTT
GAGGCCATTTTCCAGAAAATCGGCGTCTCCGATGGGACAATTGACACGGA
ATTCGAAGACTGCAAACGACGCTTCGACCGTACAATTCGCGAGCTTGGGG
AGCTCAGTCAAGGGATGGGTGCATTCTTGGATAAGAGTAGGGATCTGTAC
GGGACAGGAGTGGATTTGGGCGGCACGGCGTATGAGTACTATTGGGGGCG
GCTGATGATGGATTGGCCCCCAGGCACCCCTAGCGCCCTCCGCTCCCACC
CCGCCGCCGCGCAGTACAAACAAGCCTGGTGGCATTGCAATGAAGCGGTC
CGTCGCTCCACCACCAAAATGTGGCTCGATCAAGGCCTGACCCCCTTGCG
AGCGTTCGTCTCTGAAGTAGTCCCCGAGATTCAACATGAAGCGGACTTGA
GGGAGGCCTATGTGAAGGATTATGACTCGTACCGCCGTCGTTTCAACAGC
TTGCAGGACAAGCAGGCGAAATATGCAGCTGCTCCCCCCTCTGCGAATGG
GGGTCCGAACCCGCGTTTGGCGGAAGTGGAAAAGGCATTGTACCAGATTC
AGAGCAAGCTCCACGCGGCGGAAGACAGGTACCGACGCCAAAACTCCAAG
ATCAAAGAGGAAATGATCAAAGCGAAGCTGATGAGGGATGAGTTGTTGGA
GAACGCTATGAGGGCAGCAATTGTGAGTCAGGTGGAACTATTCACACGGA
CTGGCGAACATCTCGCGCAGCTTTTGGGGGCCTTGCCGGAGGAGGAGAAG
GTGATTTCGTTACAAAAGCAGATCAAGGCGCTTGTGGCTGAGGGAGGACC
TGAAGCACGACCTGTCGAGATGTCACAGATGGGAAAAATGGTGAAGGCAG
TCACGAATAACTTTACACCTCGCACCCCTCCCTCGCCCACTACATCTGCT
GATGGCGCGCCGTTCAAGTCAACGCCGCCGGGGCCGTCAGTTGTGGACCA
GTATAATATGGCGGCTGGTGGGCAGGATGGGAACAATGGAGGGGGAAATG
GGGCAACGAGCCCACCTAAGAGTTCCGAGAAGCCGGAAACGAGCAACAGC
ATGGTTTTGAGTCAAAGGGATGGGGGAGACGGAGGTGAAGTGG

protein sequence of jgi.p|Nanoce1779_2|668775

>mRNA_2053-protein ID=mRNA_2053-protein|Name=jgi.p|Nanoce1779_2|668775|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MDEAPPKPTVMKKMKAIKRRSVEAIFQKIGVSDGTIDTEFEDCKRRFDRT
IRELGELSQGMGAFLDKSRDLYGTGVDLGGTAYEYYWGRLMMDWPPGTPS
ALRSHPAAAQYKQAWWHCNEAVRRSTTKMWLDQGLTPLRAFVSEVVPEIQ
HEADLREAYVKDYDSYRRRFNSLQDKQAKYAAAPPSANGGPNPRLAEVEK
ALYQIQSKLHAAEDRYRRQNSKIKEEMIKAKLMRDELLENAMRAAIVSQV
ELFTRTGEHLAQLLGALPEEEKVISLQKQIKALVAEGGPEARPVEMSQMG
KMVKAVTNNFTPRTPPSPTTSADGAPFKSTPPGPSVVDQYNMAAGGQDGN
NGGGNGATSPPKSSEKPETSNSMVLSQRDGGDGGEV

mRNA from alignment at scaffold_4:650079..652250+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2053 ID=mRNA_2053|Name=jgi.p|Nanoce1779_2|668775|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp|location=Sequence derived from alignment at scaffold_4:650079..652250+ (Nannochloropsis oceanica)
CGCACGCTCGCGCAACGGCTCCTCAAATTTGTTTGTTGCTGGGCTTCCTG
CCTCCAACTCAACCAAACAGCAGCACAAGCACACAATCGCAATCTTCACG
ATGATAAACAACGACTTCCCCAAGTTATGCAAGTGGTGGGGGTGGCGGCT
CTGATCACCATCAGTCCCACGACACAACATATGCATCATTACTTGGGCCA
TGGGCCTCACCCTTCGTCCTGCTATTTTGTCCTAATCCACTGCGTACACC
CACATCTAACGTAGGGCACCGAGGACCACCACAAGCACGCGAACAAGCAC
GTTGATATTTTTTCACGACCAGTAACAGCCAATCATGGACGAGGCTCCTC
CCAAGTAAGTGTCTTGCCCTACCCCCCATCATTGTCATGTACCCTCTGCT
TCTGATTGGACGACCAGCAAGCCGGACGTGCGACAGCTCCATGTTCCTCG
TACTCAATCCACGCATCACATCCGTCCGTCTGTATATAGACCTACTGTCA
TGAAGAAGATGAAGGCCATCAAGCGCCGAAGTGTTGAGGCCATTTTCCAG
GTAGGAAAAGAGGAAGCCTGTTGTGAGGGGAGGGCGGGGGAAGAGAAGCT
TGCGAGCAGTGTTGGGCCCCATGCGAGTGTGTGTGGCTAGACTATATGGA
GCCCTCTGACTTTTCTCCCCGAACTACGTTTCCTCCTGATGGCCGCCCTC
TGTAATTGCCCTCTTGGGGGCGAGTCTAGCAAGCCCTAGGCCCATGCTTC
GTGCTGCTCCCACTGTTCCCCCTGACCTTGGACTCCAAGCATCTCCTCAA
GTGAGCGATGCTGATGACACATTTCCATCACTAACTTTTCGTATCCTTTA
TCCCCCAGAAAATCGGCGTCTCCGATGGGACAATTGACACGGAATTCGAA
GACTGCAAACGACGCTTCGACCGTACAATTCGCGAGCTTGGGGAGCTCAG
TCAAGGGATGGGTGCATTCTTGGATAAGAGTAGGGATCTGTACGGGACAG
GAGTGGATTTGGGCGGCACGGCGTATGAGTACTATTGGGGGCGGCTGATG
ATGGATTGGTGAGAAGGAGGGAGGGAAGGAGAGCTTGGACACGGGCAGAC
ACTTGTGTAGAGTGAGGATGGATCTTGGGAGCAGTGTATGAATACTTCTG
GGTGCGGCTGATGGACCACTGAGTGAGCCTTAGGTGGAGAGGGAAAGGGA
AAGGGAGTTGCATTGCGCGTTGAATCCTCCCCGATACTTGCAAATCCAAT
CAATCATCAAGACGTCCTTCCCTAACTCCTTCCCTCTTCCTTAGGCCCCC
AGGCACCCCTAGCGCCCTCCGCTCCCACCCCGCCGCCGCGCAGTACAAAC
AAGCCTGGTGGCATTGCAATGAAGCGGTCCGTCGCTCCACCACCAAAATG
TGGCTCGATCAAGGCCTGACCCCCTTGCGAGCGTTCGTCTCTGAAGTAGT
CCCCGAGATTCAACATGAAGCGGACTTGAGGGAGGCCTATGTGAAGGATT
ATGACTCGTACCGCCGTCGTTTCAACAGCTTGCAGGACAAGCAGGCGAAA
TATGCAGCTGCTCCCCCCTCTGCGAATGGGGGTCCGAACCCGCGTTTGGC
GGAAGTGGAAAAGGCATTGTACCAGATTCAGAGCAAGCTCCACGCGGCGG
AAGACAGGTACCGACGCCAAAACTCCAAGATCAAAGAGGAAATGATCAAA
GCGAAGCTGATGAGGGATGAGTTGTTGGAGAACGCTATGAGGGCAGCAAT
TGTGAGTCAGGTGGAACTATTCACACGGACTGGCGAACATCTCGCGCAGC
TTTTGGGGGCCTTGCCGGAGGAGGAGAAGGTGATTTCGTTACAAAAGCAG
ATCAAGGCGCTTGTGGCTGAGGGAGGACCTGAAGCACGACCTGTCGAGAT
GTCACAGATGGGAAAAATGGTGAAGGCAGTCACGAATAACTTTACACCTC
GCACCCCTCCCTCGCCCACTACATCTGCTGATGGCGCGCCGTTCAAGTCA
ACGCCGCCGGGGCCGTCAGTTGTGGACCAGTATAATATGGCGGCTGGTGG
GCAGGATGGGAACAATGGAGGGGGAAATGGGGCAACGAGCCCACCTAAGA
GTTCCGAGAAGCCGGAAACGAGCAACAGCATGGTTTTGAGTCAAAGGGAT
GGGGGAGACGGAGGTGAAGTGG

Coding sequence (CDS) from alignment at scaffold_4:650079..652250+

>mRNA_2053 ID=mRNA_2053|Name=jgi.p|Nanoce1779_2|668775|organism=Nannochloropsis oceanica|type=CDS|length=4632bp|location=Sequence derived from alignment at scaffold_4:650079..652250+ (Nannochloropsis oceanica)
ATGGACGAGGCTCCTCCCAAACCTACTGTCATGAAGAAGATGAAGGCCAT
CAAGCGCCGAAGTGTTGAGGCCATTTTCCAGAAAATCGGCGTCTCCGATG
GGACAATTGACACGGAATTCGAAGACTGCAAACGACGCTTCGACCGTACA
ATTCGCGAGCTTGGGGAGCTCAGTCAAGGGATGGGTGCATTCTTGGATAA
GAGTAGGGATCTGTACGGGACAGGAGTGGATTTGGGCGGCACGGCGTATG
AGTACTATTGGGGGCGGCTGATGATGGATTGGCCCCCAGGCACCCCTAGC
GCCCTCCGCTCCCACCCCGCCGCCGCGCAGTACAAACAAGCCTGGTGGCA
TTGCAATGAAGCGGTCCGTCGCTCCACCACCAAAATGTGGCTCGATCAAG
GCCTGACCCCCTTGCGAGCGTTCGTCTCTGAAGTAGTCCCCGAGATTCAA
CATGAAGCGGACTTGAGGGAGGCCTATGTGAAGGATTATGACTCGTACCG
CCGTCGTTTCAACAGCTTGCAGGACAAGCAGGCGAAATATGCAGCTGCTC
CCCCCTCTGCGAATGGGGGTCCGAACCCGCGTTTGGCGGAAGTGGAAAAG
GCATTGTACCAGATTCAGAGCAAGCTCCACGCGGCGGAAGACAGGTACCG
ACGCCAAAACTCCAAGATCAAAGAGGAAATGATCAAAGCGAAGCTGATGA
GGGATGAGTTGTTGGAGAACGCTATGAGGGCAGCAATTGTGAGTCAGGTG
GAACTATTCACACGGACTGGCGAACATCTCGCGCAGCTTTTGGGGGCCTT
GCCGGAGGAGGAGAAGGTGATTTCGTTACAAAAGCAGATCAAGGCGCTTG
TGGCTGAGGGAGGACCTGAAGCACGACCTGTCGAGATGTCACAGATGGGA
AAAATGGTGAAGGCAGTCACGAATAACTTTACACCTCGCACCCCTCCCTC
GCCCACTACATCTGCTGATGGCGCGCCGTTCAAGTCAACGCCGCCGGGGC
CGTCAGTTGTGGACCAGTATAATATGGCGGCTGGTGGGCAGGATGGGAAC
AATGGAGGGGGAAATGGGGCAACGAGCCCACCTAAGAGTTCCGAGAAGCC
GGAAACGAGCAACAGCATGGTTTTGAGTCAAAGGGATGGGGGAGACGGAG
GTGAAGTGATGGACGAGGCTCCTCCCAAACCTACTGTCATGAAGAAGATG
AAGGCCATCAAGCGCCGAAGTGTTGAGGCCATTTTCCAGAAAATCGGCGT
CTCCGATGGGACAATTGACACGGAATTCGAAGACTGCAAACGACGCTTCG
ACCGTACAATTCGCGAGCTTGGGGAGCTCAGTCAAGGGATGGGTGCATTC
TTGGATAAGAGTAGGGATCTGTACGGGACAGGAGTGGATTTGGGCGGCAC
GGCGTATGAGTACTATTGGGGGCGGCTGATGATGGATTGGCCCCCAGGCA
CCCCTAGCGCCCTCCGCTCCCACCCCGCCGCCGCGCAGTACAAACAAGCC
TGGTGGCATTGCAATGAAGCGGTCCGTCGCTCCACCACCAAAATGTGGCT
CGATCAAGGCCTGACCCCCTTGCGAGCGTTCGTCTCTGAAGTAGTCCCCG
AGATTCAACATGAAGCGGACTTGAGGGAGGCCTATGTGAAGGATTATGAC
TCGTACCGCCGTCGTTTCAACAGCTTGCAGGACAAGCAGGCGAAATATGC
AGCTGCTCCCCCCTCTGCGAATGGGGGTCCGAACCCGCGTTTGGCGGAAG
TGGAAAAGGCATTGTACCAGATTCAGAGCAAGCTCCACGCGGCGGAAGAC
AGGTACCGACGCCAAAACTCCAAGATCAAAGAGGAAATGATCAAAGCGAA
GCTGATGAGGGATGAGTTGTTGGAGAACGCTATGAGGGCAGCAATTGTGA
GTCAGGTGGAACTATTCACACGGACTGGCGAACATCTCGCGCAGCTTTTG
GGGGCCTTGCCGGAGGAGGAGAAGGTGATTTCGTTACAAAAGCAGATCAA
GGCGCTTGTGGCTGAGGGAGGACCTGAAGCACGACCTGTCGAGATGTCAC
AGATGGGAAAAATGGTGAAGGCAGTCACGAATAACTTTACACCTCGCACC
CCTCCCTCGCCCACTACATCTGCTGATGGCGCGCCGTTCAAGTCAACGCC
GCCGGGGCCGTCAGTTGTGGACCAGTATAATATGGCGGCTGGTGGGCAGG
ATGGGAACAATGGAGGGGGAAATGGGGCAACGAGCCCACCTAAGAGTTCC
GAGAAGCCGGAAACGAGCAACAGCATGGTTTTGAGTCAAAGGGATGGGGG
AGACGGAGGTGAAGTGATGGACGAGGCTCCTCCCAAACCTACTGTCATGA
AGAAGATGAAGGCCATCAAGCGCCGAAGTGTTGAGGCCATTTTCCAGAAA
ATCGGCGTCTCCGATGGGACAATTGACACGGAATTCGAAGACTGCAAACG
ACGCTTCGACCGTACAATTCGCGAGCTTGGGGAGCTCAGTCAAGGGATGG
GTGCATTCTTGGATAAGAGTAGGGATCTGTACGGGACAGGAGTGGATTTG
GGCGGCACGGCGTATGAGTACTATTGGGGGCGGCTGATGATGGATTGGCC
CCCAGGCACCCCTAGCGCCCTCCGCTCCCACCCCGCCGCCGCGCAGTACA
AACAAGCCTGGTGGCATTGCAATGAAGCGGTCCGTCGCTCCACCACCAAA
ATGTGGCTCGATCAAGGCCTGACCCCCTTGCGAGCGTTCGTCTCTGAAGT
AGTCCCCGAGATTCAACATGAAGCGGACTTGAGGGAGGCCTATGTGAAGG
ATTATGACTCGTACCGCCGTCGTTTCAACAGCTTGCAGGACAAGCAGGCG
AAATATGCAGCTGCTCCCCCCTCTGCGAATGGGGGTCCGAACCCGCGTTT
GGCGGAAGTGGAAAAGGCATTGTACCAGATTCAGAGCAAGCTCCACGCGG
CGGAAGACAGGTACCGACGCCAAAACTCCAAGATCAAAGAGGAAATGATC
AAAGCGAAGCTGATGAGGGATGAGTTGTTGGAGAACGCTATGAGGGCAGC
AATTGTGAGTCAGGTGGAACTATTCACACGGACTGGCGAACATCTCGCGC
AGCTTTTGGGGGCCTTGCCGGAGGAGGAGAAGGTGATTTCGTTACAAAAG
CAGATCAAGGCGCTTGTGGCTGAGGGAGGACCTGAAGCACGACCTGTCGA
GATGTCACAGATGGGAAAAATGGTGAAGGCAGTCACGAATAACTTTACAC
CTCGCACCCCTCCCTCGCCCACTACATCTGCTGATGGCGCGCCGTTCAAG
TCAACGCCGCCGGGGCCGTCAGTTGTGGACCAGTATAATATGGCGGCTGG
TGGGCAGGATGGGAACAATGGAGGGGGAAATGGGGCAACGAGCCCACCTA
AGAGTTCCGAGAAGCCGGAAACGAGCAACAGCATGGTTTTGAGTCAAAGG
GATGGGGGAGACGGAGGTGAAGTGATGGACGAGGCTCCTCCCAAACCTAC
TGTCATGAAGAAGATGAAGGCCATCAAGCGCCGAAGTGTTGAGGCCATTT
TCCAGAAAATCGGCGTCTCCGATGGGACAATTGACACGGAATTCGAAGAC
TGCAAACGACGCTTCGACCGTACAATTCGCGAGCTTGGGGAGCTCAGTCA
AGGGATGGGTGCATTCTTGGATAAGAGTAGGGATCTGTACGGGACAGGAG
TGGATTTGGGCGGCACGGCGTATGAGTACTATTGGGGGCGGCTGATGATG
GATTGGCCCCCAGGCACCCCTAGCGCCCTCCGCTCCCACCCCGCCGCCGC
GCAGTACAAACAAGCCTGGTGGCATTGCAATGAAGCGGTCCGTCGCTCCA
CCACCAAAATGTGGCTCGATCAAGGCCTGACCCCCTTGCGAGCGTTCGTC
TCTGAAGTAGTCCCCGAGATTCAACATGAAGCGGACTTGAGGGAGGCCTA
TGTGAAGGATTATGACTCGTACCGCCGTCGTTTCAACAGCTTGCAGGACA
AGCAGGCGAAATATGCAGCTGCTCCCCCCTCTGCGAATGGGGGTCCGAAC
CCGCGTTTGGCGGAAGTGGAAAAGGCATTGTACCAGATTCAGAGCAAGCT
CCACGCGGCGGAAGACAGGTACCGACGCCAAAACTCCAAGATCAAAGAGG
AAATGATCAAAGCGAAGCTGATGAGGGATGAGTTGTTGGAGAACGCTATG
AGGGCAGCAATTGTGAGTCAGGTGGAACTATTCACACGGACTGGCGAACA
TCTCGCGCAGCTTTTGGGGGCCTTGCCGGAGGAGGAGAAGGTGATTTCGT
TACAAAAGCAGATCAAGGCGCTTGTGGCTGAGGGAGGACCTGAAGCACGA
CCTGTCGAGATGTCACAGATGGGAAAAATGGTGAAGGCAGTCACGAATAA
CTTTACACCTCGCACCCCTCCCTCGCCCACTACATCTGCTGATGGCGCGC
CGTTCAAGTCAACGCCGCCGGGGCCGTCAGTTGTGGACCAGTATAATATG
GCGGCTGGTGGGCAGGATGGGAACAATGGAGGGGGAAATGGGGCAACGAG
CCCACCTAAGAGTTCCGAGAAGCCGGAAACGAGCAACAGCATGGTTTTGA
GTCAAAGGGATGGGGGAGACGGAGGTGAAGTG

Synonyms

Publications