jgi.p|Nanoce1779_2|578869, mRNA_2052 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578869
Unique NamemRNA_2052
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1154
Alignment locationscaffold_4:648567..649904 -

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Properties
Property NameValue
TranscriptId578955
TrackFilteredModels2
ProteinId578869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:648567..649904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578869gene_2052Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578869mRNA_2052-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2052CDS_2052Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2052 ID=mRNA_2052|Name=jgi.p|Nanoce1779_2|578869|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp
AGGAAGCAGGCCATCCCTTCGTTTCCCTTGTGCAGGGAGAAGCTCTCACA
CTCGCCGCCGGCTGTGCATGTCCTCGACCAAACTCCAAGACGAACTTGCT
GTAGCCATTCAGGCGGCACGCAAGGCCGGCATTGCCGCCAAGGGCCTTCA
AAAAACTCTGCTCGAAGCCAAGGGCGCAGTAATTCAGAAGTCAGACAGCT
CGCCAGTCACAATTGCAGACTATAGTGCCCAGGCCTTGGTGGTTGAAGGT
CTCCGCGCCGCCTTTCCCGCTGACCAGGTGGTCGCAGAAGAGACCTCAGG
CATGTTGCGACAAGATCGAGCGACTCTTGCGGCCGTCAGAGGCGTGGTCT
GCCGAGAAAGTGGCAATCCCGCGCTCACCGAGGAGGAGTTGTGTGGCGTG
TTAGATCACGGCACGACGCCGAGGGCACGCACATGGATCCTCGACCCCAT
CGATGGTACGAAAGGTTTTATCCGCGGACAGCACTTCTGTGTCGCATTGA
GCTTGGCTCTGGAAGGGAAGCCCGTCCTCGGAGTGCTTGCTTGCCCAAAC
GTTCCTTTCCAAAGAAACAGGGCTAACGGCGCAGCTATTGGGGATGGCTG
CGTTTTTTTCGCTGTCGAAGGCCAAGGTGCTTTCATGCTCCCCTTGCAGA
CTGATAGTAGCAGTTTGCCCCTCGCAGACGAAATTGCACAGGCGACGCCT
ATTCACGTAAGTGAAGTAGCCATGGGCACGGAAGCCAAGTTTTTTGAGTC
GGCTGAGGCGGTCCATTCTTCTCATTCCGCCGCAGGGCAAGTCAGCACGG
CGTTGGGTATGAAGGAGGCACCGGTGCGATTGGACAGTCAGTGTAAGTAT
GGAATGCTTGCGCGAGGGGAGGGAGAGGTTATGTTAAGGTTGCCGAAGCT
TGGGTATGTGGAGAACATTTGGGACCATGCGCCGGCGTTCGTGGTGATAA
GGGAGGCGGGGGGGAAGGTAACAGACACGGAAGGGAAGGAGTTGGATTTT
AGCGCCGGGTGTAGGACGGGAGATGGGAAGATGGAAAGGAGGGTGACAGG
GATTGTGACGACGAACGGACGCTTGCATGTACAGGTGCTGGAAGCATTGA
GTAGGTGTTGGCCACCGGTGGCAGAGGACAGAGGGTAGGGGGAGGAGAAG
AAGG
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protein sequence of jgi.p|Nanoce1779_2|578869

>mRNA_2052-protein ID=mRNA_2052-protein|Name=jgi.p|Nanoce1779_2|578869|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSSTKLQDELAVAIQAARKAGIAAKGLQKTLLEAKGAVIQKSDSSPVTIA
DYSAQALVVEGLRAAFPADQVVAEETSGMLRQDRATLAAVRGVVCRESGN
PALTEEELCGVLDHGTTPRARTWILDPIDGTKGFIRGQHFCVALSLALEG
KPVLGVLACPNVPFQRNRANGAAIGDGCVFFAVEGQGAFMLPLQTDSSSL
PLADEIAQATPIHVSEVAMGTEAKFFESAEAVHSSHSAAGQVSTALGMKE
APVRLDSQCKYGMLARGEGEVMLRLPKLGYVENIWDHAPAFVVIREAGGK
VTDTEGKELDFSAGCRTGDGKMERRVTGIVTTNGRLHVQVLEALSRCWPP
VAEDRG*
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mRNA from alignment at scaffold_4:648567..649904-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2052 ID=mRNA_2052|Name=jgi.p|Nanoce1779_2|578869|organism=Nannochloropsis oceanica|type=mRNA|length=1338bp|location=Sequence derived from alignment at scaffold_4:648567..649904- (Nannochloropsis oceanica)
AGGAAGCAGGCCATCCCTTCGTTTCCCTTGTGCAGGGAGAAGCTCTCACA
CTCGCCGCCGGCTGTGCATGTCCTCGACCAAACTCCAAGACGAACTTGCT
GTAGCCATTCAGGCGGCACGCAAGGCCGGCATTGCCGCCAAGGGCCTTCA
AAAAACTCTGCTCGAAGCCAAGGGCGCAGTAATTCAGAAGTCAGACAGCT
CGCCAGTCACAATTGCAGACTATAGTGCCCAGGCCTTGGTGGTTGAAGGT
CTCCGCGCCGCCTTTCCCGCTGACCAGGTGGTCGCAGAAGAGACCTCAGG
CATGTTGCGACAAGATCGAGCGACTCTTGCGGCCGTCAGAGGCGTGGTCT
GCCGAGAAAGTGGCAATCCCGCGCTCACCGAGGAGGAGTTGTGTGGCGTG
TTAGATCACGGCACGACGCCGAGGGCACGGTAAGAGTTTAATAGGAAAAG
GAGGGAAGGAAGGGATAGAGGGAGATTGAACGATTATCTTGGTTTTATAT
CAAGGCATGACACTTTGAAATTGTTTTCAACGTCCCGTTATCTCATGCCA
ACCGCTTCCTCTTCCTCTTCCCTCTTCCTTACAATCCCTCCACAAAAATC
ACACACATCGAAGCACATGGATCCTCGACCCCATCGATGGTACGAAAGGT
TTTATCCGCGGACAGCACTTCTGTGTCGCATTGAGCTTGGCTCTGGAAGG
GAAGCCCGTCCTCGGAGTGCTTGCTTGCCCAAACGTTCCTTTCCAAAGAA
ACAGGGCTAACGGCGCAGCTATTGGGGATGGCTGCGTTTTTTTCGCTGTC
GAAGGCCAAGGTGCTTTCATGCTCCCCTTGCAGACTGATAGTAGCAGTTT
GCCCCTCGCAGACGAAATTGCACAGGCGACGCCTATTCACGTAAGTGAAG
TAGCCATGGGCACGGAAGCCAAGTTTTTTGAGTCGGCTGAGGCGGTCCAT
TCTTCTCATTCCGCCGCAGGGCAAGTCAGCACGGCGTTGGGTATGAAGGA
GGCACCGGTGCGATTGGACAGTCAGTGTAAGTATGGAATGCTTGCGCGAG
GGGAGGGAGAGGTTATGTTAAGGTTGCCGAAGCTTGGGTATGTGGAGAAC
ATTTGGGACCATGCGCCGGCGTTCGTGGTGATAAGGGAGGCGGGGGGGAA
GGTAACAGACACGGAAGGGAAGGAGTTGGATTTTAGCGCCGGGTGTAGGA
CGGGAGATGGGAAGATGGAAAGGAGGGTGACAGGGATTGTGACGACGAAC
GGACGCTTGCATGTACAGGTGCTGGAAGCATTGAGTAGGTGTTGGCCACC
GGTGGCAGAGGACAGAGGGTAGGGGGAGGAGAAGAAGG
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Coding sequence (CDS) from alignment at scaffold_4:648567..649904-

>mRNA_2052 ID=mRNA_2052|Name=jgi.p|Nanoce1779_2|578869|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_4:648567..649904- (Nannochloropsis oceanica)
CACATGGATCCTCGACCCCATCGATGGTACGAAAGGTTTTATCCGCGGAC
AGCACTTCTGTGTCGCATTGAGCTTGGCTCTGGAAGGGAAGCCCGTCCTC
GGAGTGCTTGCTTGCCCAAACGTTCCTTTCCAAAGAAACAGGGCTAACGG
CGCAGCTATTGGGGATGGCTGCGTTTTTTTCGCTGTCGAAGGCCAAGGTG
CTTTCATGCTCCCCTTGCAGACTGATAGTAGCAGTTTGCCCCTCGCAGAC
GAAATTGCACAGGCGACGCCTATTCACGTAAGTGAAGTAGCCATGGGCAC
GGAAGCCAAGTTTTTTGAGTCGGCTGAGGCGGTCCATTCTTCTCATTCCG
CCGCAGGGCAAGTCAGCACGGCGTTGGGTATGAAGGAGGCACCGGTGCGA
TTGGACAGTCAGTGTAAGTATGGAATGCTTGCGCGAGGGGAGGGAGAGGT
TATGTTAAGGTTGCCGAAGCTTGGGTATGTGGAGAACATTTGGGACCATG
CGCCGGCGTTCGTGGTGATAAGGGAGGCGGGGGGGAAGGTAACAGACACG
GAAGGGAAGGAGTTGGATTTTAGCGCCGGGTGTAGGACGGGAGATGGGAA
GATGGAAAGGAGGGTGACAGGGATTGTGACGACGAACGGACGCTTGCATG
TACAGGTGCTGGAAGCATTGAGTAGGTGTTGGCCACCGGTGGCAGAGGAC
AGAGGGTAGATGTCCTCGACCAAACTCCAAGACGAACTTGCTGTAGCCAT
TCAGGCGGCACGCAAGGCCGGCATTGCCGCCAAGGGCCTTCAAAAAACTC
TGCTCGAAGCCAAGGGCGCAGTAATTCAGAAGTCAGACAGCTCGCCAGTC
ACAATTGCAGACTATAGTGCCCAGGCCTTGGTGGTTGAAGGTCTCCGCGC
CGCCTTTCCCGCTGACCAGGTGGTCGCAGAAGAGACCTCAGGCATGTTGC
GACAAGATCGAGCGACTCTTGCGGCCGTCAGAGGCGTGGTCTGCCGAGAA
AGTGGCAATCCCGCGCTCACCGAGGAGGAGTTGTGTGGCGTGTTAGATCA
CGGCACGACGCCGAGGGCACGCACATGGATCCTCGACCCCATCGATGGTA
CGAAAGGTTTTATCCGCGGACAGCACTTCTGTGTCGCATTGAGCTTGGCT
CTGGAAGGGAAGCCCGTCCTCGGAGTGCTTGCTTGCCCAAACGTTCCTTT
CCAAAGAAACAGGGCTAACGGCGCAGCTATTGGGGATGGCTGCGTTTTTT
TCGCTGTCGAAGGCCAAGGTGCTTTCATGCTCCCCTTGCAGACTGATAGT
AGCAGTTTGCCCCTCGCAGACGAAATTGCACAGGCGACGCCTATTCACGT
AAGTGAAGTAGCCATGGGCACGGAAGCCAAGTTTTTTGAGTCGGCTGAGG
CGGTCCATTCTTCTCATTCCGCCGCAGGGCAAGTCAGCACGGCGTTGGGT
ATGAAGGAGGCACCGGTGCGATTGGACAGTCAGTGTAAGTATGGAATGCT
TGCGCGAGGGGAGGGAGAGGTTATGTTAAGGTTGCCGAAGCTTGGGTATG
TGGAGAACATTTGGGACCATGCGCCGGCGTTCGTGGTGATAAGGGAGGCG
GGGGGGAAGGTAACAGACACGGAAGGGAAGGAGTTGGATTTTAGCGCCGG
GTGTAGGACGGGAGATGGGAAGATGGAAAGGAGGGTGACAGGGATTGTGA
CGACGAACGGACGCTTGCATGTACAGGTGCTGGAAGCATTGAGTAGGTGT
TGGCCACCGGTGGCAGAGGACAGAGGGTAGATGTCCTCGACCAAACTCCA
AGACGAACTTGCTGTAGCCATTCAGGCGGCACGCAAGGCCGGCATTGCCG
CCAAGGGCCTTCAAAAAACTCTGCTCGAAGCCAAGGGCGCAGTAATTCAG
AAGTCAGACAGCTCGCCAGTCACAATTGCAGACTATAGTGCCCAGGCCTT
GGTGGTTGAAGGTCTCCGCGCCGCCTTTCCCGCTGACCAGGTGGTCGCAG
AAGAGACCTCAGGCATGTTGCGACAAGATCGAGCGACTCTTGCGGCCGTC
AGAGGCGTGGTCTGCCGAGAAAGTGGCAATCCCGCGCTCACCGAGGAGGA
GTTGTGTGGCGTGTTAGATCACGGCACGACGCCGAGGGCACG
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Synonyms
Publications