jgi.p|Nanoce1779_2|578862, mRNA_2050 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578862
Unique Name	mRNA_2050
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2555
Alignment location	scaffold_4:644679..647233 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578948
Track	FilteredModels2
ProteinId	578862

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:644679..647233 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578862	gene_2050	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578862	mRNA_2050-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2050	CDS_2050	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:644679..647233+
coding sequence from alignment at scaffold_4:644679..647233+

mRNA sequence

>mRNA_2050 ID=mRNA_2050|Name=jgi.p|Nanoce1779_2|578862|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp
CCCACCACTGGTGGTGCTGCTGGTGCTGGTGTGCCAGGAGTAGGATCTAC
AGGAGGGTCTACTGCGGGGCCGCCGGAGCTGTCGCCATTTGAGAAGTTGT
ATGAGGTGGTTGTGCCTCAAGGGGTACGGCCAGGTGAACCTTTTGTTTTG
TTGGCGGACGGGCAACGCGTGACGGTGACGTGTCCGGTTGATGCGCGACC
GAATCATAAAATTCGATTCAAGTTGCCCATCGTCCCGACGAATGAGCAGT
TGGCGGCGTACGAGATGAAGTACAACAAGGATGGGTGGGTGCGGTGTCTT
GGGGTTGATGTCAAATTTCACTGGTTTAAGGTCGATGCTTCCAATAGCAA
CTTGATCGGGAACAGTGCTATCGGTGGGGGTGGGGCGGGTGGAGGAAGGA
GGCCCAAGATTGGTAATTTCTCGTTTGAAGACACGGCATTCGTAAGGTCA
TTTAGGGGTCCTCGTTCCTCACCTGAGTTGGTGCTAGTCCCACCCTCGGA
GGTGGCGATGGACACGACAGTGGAGGGGACGAGACTGAATTTCCATACAT
TGTCGCATGGGGCTCAATTACCGTTCGATAAGAAGGTAGAGTTTTTTAGG
CAGCATTGCTCGAGCTTGAAGGTGCCCTGGGAGAAAGGGCATATGGAGAT
AAGGGTACGGAGGTCGCAATTGCTCTCGGATTCGTTGATGGCGTTTGAGA
GGATCAGCAAGGAGAATATGCGGAAGATCTTTCGATTTGAGTTTTTGGGC
GAGCCAGCGATTGATGCGGGGGGGGTGGCGAGGGAGTGGTATGACCAGGT
CACTGATGCCTTGTTTAACCCTGATTTTGGTTTGTTTCAGTACAGTGGGG
TAGATCAGATGTGCATGCAGATAAACGCAGCGAGTGGTATGGTGGAAGCG
CACCATGATCGGTACTTCCGTTTTCTTGGGCGGTTGCTTGGAAAGGCTTT
GTTGGACGGGCAAATTGTGCGGCATCATTTGGTGAGACCCGTTATGAAGC
ACATCCTGGGGTGGCCGGTCGTGTTGGCGGACCTGGAATACCTCGATGCG
GAGACCTTGCAAAATTTGGGTAAATTACAAGATATGGACCCGGGCGTTTT
GGGGGATCTATGCCTGGACTTTACTGTGACGGAGAACTTTCTGGGTCAGT
CGGAAACGGTAGAGCTGGTCCCAGACGGCGCGAACAAGACGTTGGACGCC
GATAATCTCGATGCTTATCTGGAAGCCAACTTGAAGTTTCGGTTGTGTGA
TCGGGTGAAGGTACAATTGAGGGAGTTGCTGTTGGGATTTTATGAGTGTG
TGCCCGAGGCTTTGTTGACGATTTTCGATTTTCAGCAGTTGGAGTTGTTG
CTGTGCGGGATGCCGAATTTGGACATCGCGGATTGGATGGCCCAAACAGA
ATACGGAGGGGAGTTCTCACGGCAAGGCGCGCATCATCGCGTGGTTCAAT
GGTTTTGGGAGGTGGTGAGGGATGACTTTGATCAGGAGCAACGGGCGAGG
TTATTACAGTTTACGACGGGCACTTCGGGGGTCCCGGCACAGGGGTTTGC
GTTTTTGCAGGGGAATGATGGGAACATACGAAAATTTACGGTAAACAGTA
TTTCGTTGGAGCAATCCGTTTTCCCTCGGGCACATACCTGCTTTAATCGG
ATTGATTTGCCGTTATACAAATCGAAGAAGGATTTGAAGGAACGCCTGTC
GCTGGCCATTCAGATGGAATCGTCGGGGTTTTCGATTGAGTGAATGGAAG
ACATCGGGAGGGAAAAGGAAGGGAGGATGGATGAGAGTATTTGTTTGTAG
GTAACGTGCACAAATGTTACAAGGGCATCGATAAAAAAGTGTAACAAGAT
ACAAAAGAAAAGCACACTGTTGTTGGTATGGCACGGTGTATCTTTGTCTG
CGTGCTTTGGGATGGGGCGTGTGGGGCGTATGGGACTCACCTGCGAGGCC
TTGATTTTGCTTCTTTGGGAGGCGGGAGCTTGACCCCACGATTCGGTATG
TCTTCAATGCCTGAGAGCACCAGGCGTAATTGCCGTTCCAACGAGGCAGC
CAGAACTGAGAGATCGCCTGCTGAGGCTCTCTCGCCTCGATTTCATGCGC
CGACGGCCTCCTCGCTAGGGCAGTCATGGCTGCATGAATAGCTCATTGAA
ATTTTCAGGGCTTTTTTCGAACCACATGGCATGTGTGGCAAAAGAATGCC
TTGAAGCCGCCAACAGGCGCCTGCGACGGAGCGTATGATTCAGCGACGAT
GCCGAGCCAAAACCCATGCATGTTGCAGTGCGCTTTCCAGTCCTCCACCC
GCGAGAGGATTTTCAGCGCATTGAGTCAGTCATTCATGTAACAGATGGTG
TTTGTGTTCATCGAGGGAGTTCGGGTTCTTGCCTGGGGAAGTGCAGGCAG
GAGGTTGTTGGGTACGACAGGGCCAACACTCTTTCATGCCTATTTACTAG
CCTGTCTTCTCCCTCAATACCCAACACAACCACAGGGTCCGGTTGCCATG
CTCAAGCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGCCAATGC
CTTCT

protein sequence of jgi.p|Nanoce1779_2|578862

>mRNA_2050-protein ID=mRNA_2050-protein|Name=jgi.p|Nanoce1779_2|578862|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MKYNKDGWVRCLGVDVKFHWFKVDASNSNLIGNSAIGGGGAGGGRRPKIG
NFSFEDTAFVRSFRGPRSSPELVLVPPSEVAMDTTVEGTRLNFHTLSHGA
QLPFDKKVEFFRQHCSSLKVPWEKGHMEIRVRRSQLLSDSLMAFERISKE
NMRKIFRFEFLGEPAIDAGGVAREWYDQVTDALFNPDFGLFQYSGVDQMC
MQINAASGMVEAHHDRYFRFLGRLLGKALLDGQIVRHHLVRPVMKHILGW
PVVLADLEYLDAETLQNLGKLQDMDPGVLGDLCLDFTVTENFLGQSETVE
LVPDGANKTLDADNLDAYLEANLKFRLCDRVKVQLRELLLGFYECVPEAL
LTIFDFQQLELLLCGMPNLDIADWMAQTEYGGEFSRQGAHHRVVQWFWEV
VRDDFDQEQRARLLQFTTGTSGVPAQGFAFLQGNDGNIRKFTVNSISLEQ
SVFPRAHTCFNRIDLPLYKSKKDLKERLSLAIQMESSGFSIE*

mRNA from alignment at scaffold_4:644679..647233+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2050 ID=mRNA_2050|Name=jgi.p|Nanoce1779_2|578862|organism=Nannochloropsis oceanica|type=mRNA|length=2555bp|location=Sequence derived from alignment at scaffold_4:644679..647233+ (Nannochloropsis oceanica)
CCCACCACTGGTGGTGCTGCTGGTGCTGGTGTGCCAGGAGTAGGATCTAC
AGGAGGGTCTACTGCGGGGCCGCCGGAGCTGTCGCCATTTGAGAAGTTGT
ATGAGGTGGTTGTGCCTCAAGGGGTACGGCCAGGTGAACCTTTTGTTTTG
TTGGCGGACGGGCAACGCGTGACGGTGACGTGTCCGGTTGATGCGCGACC
GAATCATAAAATTCGATTCAAGTTGCCCATCGTCCCGACGAATGAGCAGT
TGGCGGCGTACGAGATGAAGTACAACAAGGATGGGTGGGTGCGGTGTCTT
GGGGTTGATGTCAAATTTCACTGGTTTAAGGTCGATGCTTCCAATAGCAA
CTTGATCGGGAACAGTGCTATCGGTGGGGGTGGGGCGGGTGGAGGAAGGA
GGCCCAAGATTGGTAATTTCTCGTTTGAAGACACGGCATTCGTAAGGTCA
TTTAGGGGTCCTCGTTCCTCACCTGAGTTGGTGCTAGTCCCACCCTCGGA
GGTGGCGATGGACACGACAGTGGAGGGGACGAGACTGAATTTCCATACAT
TGTCGCATGGGGCTCAATTACCGTTCGATAAGAAGGTAGAGTTTTTTAGG
CAGCATTGCTCGAGCTTGAAGGTGCCCTGGGAGAAAGGGCATATGGAGAT
AAGGGTACGGAGGTCGCAATTGCTCTCGGATTCGTTGATGGCGTTTGAGA
GGATCAGCAAGGAGAATATGCGGAAGATCTTTCGATTTGAGTTTTTGGGC
GAGCCAGCGATTGATGCGGGGGGGGTGGCGAGGGAGTGGTATGACCAGGT
CACTGATGCCTTGTTTAACCCTGATTTTGGTTTGTTTCAGTACAGTGGGG
TAGATCAGATGTGCATGCAGATAAACGCAGCGAGTGGTATGGTGGAAGCG
CACCATGATCGGTACTTCCGTTTTCTTGGGCGGTTGCTTGGAAAGGCTTT
GTTGGACGGGCAAATTGTGCGGCATCATTTGGTGAGACCCGTTATGAAGC
ACATCCTGGGGTGGCCGGTCGTGTTGGCGGACCTGGAATACCTCGATGCG
GAGACCTTGCAAAATTTGGGTAAATTACAAGATATGGACCCGGGCGTTTT
GGGGGATCTATGCCTGGACTTTACTGTGACGGAGAACTTTCTGGGTCAGT
CGGAAACGGTAGAGCTGGTCCCAGACGGCGCGAACAAGACGTTGGACGCC
GATAATCTCGATGCTTATCTGGAAGCCAACTTGAAGTTTCGGTTGTGTGA
TCGGGTGAAGGTACAATTGAGGGAGTTGCTGTTGGGATTTTATGAGTGTG
TGCCCGAGGCTTTGTTGACGATTTTCGATTTTCAGCAGTTGGAGTTGTTG
CTGTGCGGGATGCCGAATTTGGACATCGCGGATTGGATGGCCCAAACAGA
ATACGGAGGGGAGTTCTCACGGCAAGGCGCGCATCATCGCGTGGTTCAAT
GGTTTTGGGAGGTGGTGAGGGATGACTTTGATCAGGAGCAACGGGCGAGG
TTATTACAGTTTACGACGGGCACTTCGGGGGTCCCGGCACAGGGGTTTGC
GTTTTTGCAGGGGAATGATGGGAACATACGAAAATTTACGGTAAACAGTA
TTTCGTTGGAGCAATCCGTTTTCCCTCGGGCACATACCTGCTTTAATCGG
ATTGATTTGCCGTTATACAAATCGAAGAAGGATTTGAAGGAACGCCTGTC
GCTGGCCATTCAGATGGAATCGTCGGGGTTTTCGATTGAGTGAATGGAAG
ACATCGGGAGGGAAAAGGAAGGGAGGATGGATGAGAGTATTTGTTTGTAG
GTAACGTGCACAAATGTTACAAGGGCATCGATAAAAAAGTGTAACAAGAT
ACAAAAGAAAAGCACACTGTTGTTGGTATGGCACGGTGTATCTTTGTCTG
CGTGCTTTGGGATGGGGCGTGTGGGGCGTATGGGACTCACCTGCGAGGCC
TTGATTTTGCTTCTTTGGGAGGCGGGAGCTTGACCCCACGATTCGGTATG
TCTTCAATGCCTGAGAGCACCAGGCGTAATTGCCGTTCCAACGAGGCAGC
CAGAACTGAGAGATCGCCTGCTGAGGCTCTCTCGCCTCGATTTCATGCGC
CGACGGCCTCCTCGCTAGGGCAGTCATGGCTGCATGAATAGCTCATTGAA
ATTTTCAGGGCTTTTTTCGAACCACATGGCATGTGTGGCAAAAGAATGCC
TTGAAGCCGCCAACAGGCGCCTGCGACGGAGCGTATGATTCAGCGACGAT
GCCGAGCCAAAACCCATGCATGTTGCAGTGCGCTTTCCAGTCCTCCACCC
GCGAGAGGATTTTCAGCGCATTGAGTCAGTCATTCATGTAACAGATGGTG
TTTGTGTTCATCGAGGGAGTTCGGGTTCTTGCCTGGGGAAGTGCAGGCAG
GAGGTTGTTGGGTACGACAGGGCCAACACTCTTTCATGCCTATTTACTAG
CCTGTCTTCTCCCTCAATACCCAACACAACCACAGGGTCCGGTTGCCATG
CTCAAGCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGCCAATGC
CTTCT

Coding sequence (CDS) from alignment at scaffold_4:644679..647233+

>mRNA_2050 ID=mRNA_2050|Name=jgi.p|Nanoce1779_2|578862|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at scaffold_4:644679..647233+ (Nannochloropsis oceanica)
ATGAAGTACAACAAGGATGGGTGGGTGCGGTGTCTTGGGGTTGATGTCAA
ATTTCACTGGTTTAAGGTCGATGCTTCCAATAGCAACTTGATCGGGAACA
GTGCTATCGGTGGGGGTGGGGCGGGTGGAGGAAGGAGGCCCAAGATTGGT
AATTTCTCGTTTGAAGACACGGCATTCGTAAGGTCATTTAGGGGTCCTCG
TTCCTCACCTGAGTTGGTGCTAGTCCCACCCTCGGAGGTGGCGATGGACA
CGACAGTGGAGGGGACGAGACTGAATTTCCATACATTGTCGCATGGGGCT
CAATTACCGTTCGATAAGAAGGTAGAGTTTTTTAGGCAGCATTGCTCGAG
CTTGAAGGTGCCCTGGGAGAAAGGGCATATGGAGATAAGGGTACGGAGGT
CGCAATTGCTCTCGGATTCGTTGATGGCGTTTGAGAGGATCAGCAAGGAG
AATATGCGGAAGATCTTTCGATTTGAGTTTTTGGGCGAGCCAGCGATTGA
TGCGGGGGGGGTGGCGAGGGAGTGGTATGACCAGGTCACTGATGCCTTGT
TTAACCCTGATTTTGGTTTGTTTCAGTACAGTGGGGTAGATCAGATGTGC
ATGCAGATAAACGCAGCGAGTGGTATGGTGGAAGCGCACCATGATCGGTA
CTTCCGTTTTCTTGGGCGGTTGCTTGGAAAGGCTTTGTTGGACGGGCAAA
TTGTGCGGCATCATTTGGTGAGACCCGTTATGAAGCACATCCTGGGGTGG
CCGGTCGTGTTGGCGGACCTGGAATACCTCGATGCGGAGACCTTGCAAAA
TTTGGGTAAATTACAAGATATGGACCCGGGCGTTTTGGGGGATCTATGCC
TGGACTTTACTGTGACGGAGAACTTTCTGGGTCAGTCGGAAACGGTAGAG
CTGGTCCCAGACGGCGCGAACAAGACGTTGGACGCCGATAATCTCGATGC
TTATCTGGAAGCCAACTTGAAGTTTCGGTTGTGTGATCGGGTGAAGGTAC
AATTGAGGGAGTTGCTGTTGGGATTTTATGAGTGTGTGCCCGAGGCTTTG
TTGACGATTTTCGATTTTCAGCAGTTGGAGTTGTTGCTGTGCGGGATGCC
GAATTTGGACATCGCGGATTGGATGGCCCAAACAGAATACGGAGGGGAGT
TCTCACGGCAAGGCGCGCATCATCGCGTGGTTCAATGGTTTTGGGAGGTG
GTGAGGGATGACTTTGATCAGGAGCAACGGGCGAGGTTATTACAGTTTAC
GACGGGCACTTCGGGGGTCCCGGCACAGGGGTTTGCGTTTTTGCAGGGGA
ATGATGGGAACATACGAAAATTTACGGTAAACAGTATTTCGTTGGAGCAA
TCCGTTTTCCCTCGGGCACATACCTGCTTTAATCGGATTGATTTGCCGTT
ATACAAATCGAAGAAGGATTTGAAGGAACGCCTGTCGCTGGCCATTCAGA
TGGAATCGTCGGGGTTTTCGATTGAGTGA

Synonyms

Publications