jgi.p|Nanoce1779_2|578852, mRNA_2048 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578852
Unique Name	mRNA_2048
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2090
Alignment location	scaffold_4:640468..642671 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578938
Track	FilteredModels2
ProteinId	578852

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:640468..642671 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578852	gene_2048	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578852	mRNA_2048-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2048	CDS_2048	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:640468..642671+
coding sequence from alignment at scaffold_4:640468..642671+

mRNA sequence

>mRNA_2048 ID=mRNA_2048|Name=jgi.p|Nanoce1779_2|578852|organism=Nannochloropsis oceanica|type=mRNA|length=2090bp
GATAGAGGATGTGCGGATTTTAATCTTAACATCGTGGTGAAAATGAGCGC
ACTTGGCTTCCTTTTTTTCATTGTCAAGGAATGCGTCACCACGCACGTCT
AAATCATCCTTACTTTATGTCATCTCTCTCCGAACAAGGCTCGTAACCTA
GATACCCTCCTTCCTGCCTTCTATTATCCTCATTTATGTGGTCGTCCTCG
ACGCGCGCGAGAAGAGATTAACAAACACAAGGTACACAGGGGCCATCGCG
GCCAAATTTCCAACGGCAGGCGCGGTGCCATGTGAATTGCGTCTACCTCC
CGGGTTGTCTCCCCACGTCAACCCGTGGCTCCCTGGTGATGGCTGGATAG
TGTCTGGGGTCATCGCGCCGTCCACCCCTTTCTCCCAAATAGTCATGAAA
CCCTCCACGAGCAGCCGCAGCGACGAGGCGGAGTTAGTAACGCTGGTGGC
AAAGGTGGAGGAGTACTTGGGTAAGACCGCAATGGGCAATGACACCGATG
GGAGAGAGTACGAGTCCTTGACGGCGCTTTGGGCTGGGACGGGCATCCTG
GGGAAAGAGAGCTCCAATGCAGGAGAAGAAGATGCAATCCCGGCGTGGTA
CAGTCAGGCGGCCACTTACTGGGAGGAGGAAGGCAACTGCCCCCCGACGG
TGGATGGGGTGCTGGGCGGCTTTGGTCATGTTTCAGGCACAGACGTCGCG
GGCTCCCGGCTGTTTTTGGAAGCCCGAGTCAAGCCTTTGATCCCGTCCTT
GCGCTTCGGGCGGGCGGTAGATTGTGGGGCGGGCATCGGACGGGTGACGA
AGCATCTGCTTCTCCCCATGTTTGAGAAAGTGGAGTTGCTGGAGCAGAGC
CCCCGTCTGTTGGCCGCTGCCCCAGCTTTTATTTTTGGGCGGGAAGCAAC
AGCAGCCGCAGTGGCAGCAGCATCATCAGCAGCAAGGAGAGAAAGTGGAA
ATACAGACTGGGAAAAGTCAGTTGTGCTACAGAAGACGACCCAGAAACTT
CCAATTGTGGGCCTGAATGGCACTTCGGCCTCGCCCGAACCCCAGCACCA
CCAGCACCAGCAACACGCCCGGGAGCCATCTTTGGAACGCGTGGCGTACC
TTTGTGAAGGAATGCAAGACTTTGATCCAGCGTCAGGGGTGGTCTACGAT
GTGGTGTGGATTCAGTGGTGTATTGGGCACCTGCATGATCTTGACCTTGT
TCGCTTTCTGGGTCGGATGAAAGCCGCTTTACGACCCGGAGGGAAGGGTG
TGGTTATTGTAAAGGATAACTGTTGTGACTCATCGGTAGATTTTGTGGTA
GATAAGGATGATAGTAGCTTGACACGGTCCCCTGCCTATTTGAAGGCATT
GTTCAAAGTTGCTGGATATGAATTGCGGGTTGAGGAAGAACAGCAAGGCT
TTCCGGGAGAGCTGTTCCCGGTTTTGATGTTTTGCTTTACTGCGAAAGAG
GACGACAAAGAGGAGGATTGGGGGGGACTTAAGACGTCATCGTGAGGTTG
ACAAGAGGTGGAGAGGAAGCGGAAAAGGGGGATCGACAAAATGTTCTTCT
TGTGCTAAGCAAATGGTTCGAGGTCGATGAATTAAAAAGAGGAGTGGAGG
GAGAATCAGAGAGCGTGGCGTTGCTGTGGATCACGAGACGTCTTTCTGAA
ACGTAGTGGAGCGGGTTGAATAGTGGCTCTGAGAAAGAAGGGGAATGCTG
AATTGGTGTCGAGCAAGATGATAGCTCGAGACGGTGACAATATATTATAT
GTACAGTAGTAGCCAGGTAGATTTAAACTCTTCGAGTATTTATTTTTCAA
TAAGAAAGAGGAATTTAAAGAAATATAGAAGCCGCAAAAAAAACAGAAAA
ATAAAAGAGGGAGCTTCAGTCGTCGATGTGCATGCCTCGGGCATGTTTTT
CCTCCCTCTTTTCATCATCTGCAACACTCATTATACATTACACGTAGATT
TAAATCCATTCCCTAATGCTTCATAATTCTCCGTCACCTGTCTTCTTCTT
CTTAGGAAGAAAAAGAAGAAATGAAAGAAGCCTCAAAGGAATTCATAACA
TGATATAACGAAAAAACAAATAAAACACCACCACCACTAC

protein sequence of jgi.p|Nanoce1779_2|578852

>mRNA_2048-protein ID=mRNA_2048-protein|Name=jgi.p|Nanoce1779_2|578852|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MKPSTSSRSDEAELVTLVAKVEEYLGKTAMGNDTDGREYESLTALWAGTG
ILGKESSNAGEEDAIPAWYSQAATYWEEEGNCPPTVDGVLGGFGHVSGTD
VAGSRLFLEARVKPLIPSLRFGRAVDCGAGIGRVTKHLLLPMFEKVELLE
QSPRLLAAAPAFIFGREATAAAVAAASSAARRESGNTDWEKSVVLQKTTQ
KLPIVGLNGTSASPEPQHHQHQQHAREPSLERVAYLCEGMQDFDPASGVV
YDVVWIQWCIGHLHDLDLVRFLGRMKAALRPGGKGVVIVKDNCCDSSVDF
VVDKDDSSLTRSPAYLKALFKVAGYELRVEEEQQGFPGELFPVLMFCFTA
KEDDKEEDWGGLKTSS*

mRNA from alignment at scaffold_4:640468..642671+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2048 ID=mRNA_2048|Name=jgi.p|Nanoce1779_2|578852|organism=Nannochloropsis oceanica|type=mRNA|length=2204bp|location=Sequence derived from alignment at scaffold_4:640468..642671+ (Nannochloropsis oceanica)
GATAGAGGATGTGCGGATTTTAATCTTAACATCGTGGTGAAAATGAGCGC
ACTTGGCTTCCTTTTTTTCATTGTCAAGGAATGCGTCACCACGCACGTCT
AAATCATCCTTACTTTATGTCATCTCTCTCCGAACAAGGCTCGTAACCTA
GATACCCTCCTTCCTGCCTTCTATTATCCTCATTTATGTGGTCGTCCTCG
ACGCGCGCGAGAAGAGATTAACAAACACAAGGTACACAGGGGCCATCGCG
GCCAAATTTCCAACGGCAGGCGCGGTGCCATGTGAATTGCGTCTACCTCC
CGGGTTGTCTCCCCACGTCAACCCGTGGCTCCCTGGTGATGGCTGGATAG
TGTCTGGGTAAATGTGTATGCGTAGAATTCCCAATTGGTCGTATGATTTT
GACATGGATCACAGCACATGCGCTGATCTACCTCTCAATACCCTAATCCC
ACGCATTCCTGAAACGCACAGGGTCATCGCGCCGTCCACCCCTTTCTCCC
AAATAGTCATGAAACCCTCCACGAGCAGCCGCAGCGACGAGGCGGAGTTA
GTAACGCTGGTGGCAAAGGTGGAGGAGTACTTGGGTAAGACCGCAATGGG
CAATGACACCGATGGGAGAGAGTACGAGTCCTTGACGGCGCTTTGGGCTG
GGACGGGCATCCTGGGGAAAGAGAGCTCCAATGCAGGAGAAGAAGATGCA
ATCCCGGCGTGGTACAGTCAGGCGGCCACTTACTGGGAGGAGGAAGGCAA
CTGCCCCCCGACGGTGGATGGGGTGCTGGGCGGCTTTGGTCATGTTTCAG
GCACAGACGTCGCGGGCTCCCGGCTGTTTTTGGAAGCCCGAGTCAAGCCT
TTGATCCCGTCCTTGCGCTTCGGGCGGGCGGTAGATTGTGGGGCGGGCAT
CGGACGGGTGACGAAGCATCTGCTTCTCCCCATGTTTGAGAAAGTGGAGT
TGCTGGAGCAGAGCCCCCGTCTGTTGGCCGCTGCCCCAGCTTTTATTTTT
GGGCGGGAAGCAACAGCAGCCGCAGTGGCAGCAGCATCATCAGCAGCAAG
GAGAGAAAGTGGAAATACAGACTGGGAAAAGTCAGTTGTGCTACAGAAGA
CGACCCAGAAACTTCCAATTGTGGGCCTGAATGGCACTTCGGCCTCGCCC
GAACCCCAGCACCACCAGCACCAGCAACACGCCCGGGAGCCATCTTTGGA
ACGCGTGGCGTACCTTTGTGAAGGAATGCAAGACTTTGATCCAGCGTCAG
GGGTGGTCTACGATGTGGTGTGGATTCAGTGGTGTATTGGGCACCTGCAT
GATCTTGACCTTGTTCGCTTTCTGGGTCGGATGAAAGCCGCTTTACGACC
CGGAGGGAAGGGTGTGGTTATTGTAAAGGATAACTGTTGTGACTCATCGG
TAGATTTTGTGGTAGATAAGGATGATAGTAGCTTGACACGGTCCCCTGCC
TATTTGAAGGCATTGTTCAAAGTTGCTGGATATGAATTGCGGGTTGAGGA
AGAACAGCAAGGCTTTCCGGGAGAGCTGTTCCCGGTTTTGATGTTTTGCT
TTACTGCGAAAGAGGACGACAAAGAGGAGGATTGGGGGGGACTTAAGACG
TCATCGTGAGGTTGACAAGAGGTGGAGAGGAAGCGGAAAAGGGGGATCGA
CAAAATGTTCTTCTTGTGCTAAGCAAATGGTTCGAGGTCGATGAATTAAA
AAGAGGAGTGGAGGGAGAATCAGAGAGCGTGGCGTTGCTGTGGATCACGA
GACGTCTTTCTGAAACGTAGTGGAGCGGGTTGAATAGTGGCTCTGAGAAA
GAAGGGGAATGCTGAATTGGTGTCGAGCAAGATGATAGCTCGAGACGGTG
ACAATATATTATATGTACAGTAGTAGCCAGGTAGATTTAAACTCTTCGAG
TATTTATTTTTCAATAAGAAAGAGGAATTTAAAGAAATATAGAAGCCGCA
AAAAAAACAGAAAAATAAAAGAGGGAGCTTCAGTCGTCGATGTGCATGCC
TCGGGCATGTTTTTCCTCCCTCTTTTCATCATCTGCAACACTCATTATAC
ATTACACGTAGATTTAAATCCATTCCCTAATGCTTCATAATTCTCCGTCA
CCTGTCTTCTTCTTCTTAGGAAGAAAAAGAAGAAATGAAAGAAGCCTCAA
AGGAATTCATAACATGATATAACGAAAAAACAAATAAAACACCACCACCA
CTAC

Coding sequence (CDS) from alignment at scaffold_4:640468..642671+

>mRNA_2048 ID=mRNA_2048|Name=jgi.p|Nanoce1779_2|578852|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_4:640468..642671+ (Nannochloropsis oceanica)
ATGAAACCCTCCACGAGCAGCCGCAGCGACGAGGCGGAGTTAGTAACGCT
GGTGGCAAAGGTGGAGGAGTACTTGGGTAAGACCGCAATGGGCAATGACA
CCGATGGGAGAGAGTACGAGTCCTTGACGGCGCTTTGGGCTGGGACGGGC
ATCCTGGGGAAAGAGAGCTCCAATGCAGGAGAAGAAGATGCAATCCCGGC
GTGGTACAGTCAGGCGGCCACTTACTGGGAGGAGGAAGGCAACTGCCCCC
CGACGGTGGATGGGGTGCTGGGCGGCTTTGGTCATGTTTCAGGCACAGAC
GTCGCGGGCTCCCGGCTGTTTTTGGAAGCCCGAGTCAAGCCTTTGATCCC
GTCCTTGCGCTTCGGGCGGGCGGTAGATTGTGGGGCGGGCATCGGACGGG
TGACGAAGCATCTGCTTCTCCCCATGTTTGAGAAAGTGGAGTTGCTGGAG
CAGAGCCCCCGTCTGTTGGCCGCTGCCCCAGCTTTTATTTTTGGGCGGGA
AGCAACAGCAGCCGCAGTGGCAGCAGCATCATCAGCAGCAAGGAGAGAAA
GTGGAAATACAGACTGGGAAAAGTCAGTTGTGCTACAGAAGACGACCCAG
AAACTTCCAATTGTGGGCCTGAATGGCACTTCGGCCTCGCCCGAACCCCA
GCACCACCAGCACCAGCAACACGCCCGGGAGCCATCTTTGGAACGCGTGG
CGTACCTTTGTGAAGGAATGCAAGACTTTGATCCAGCGTCAGGGGTGGTC
TACGATGTGGTGTGGATTCAGTGGTGTATTGGGCACCTGCATGATCTTGA
CCTTGTTCGCTTTCTGGGTCGGATGAAAGCCGCTTTACGACCCGGAGGGA
AGGGTGTGGTTATTGTAAAGGATAACTGTTGTGACTCATCGGTAGATTTT
GTGGTAGATAAGGATGATAGTAGCTTGACACGGTCCCCTGCCTATTTGAA
GGCATTGTTCAAAGTTGCTGGATATGAATTGCGGGTTGAGGAAGAACAGC
AAGGCTTTCCGGGAGAGCTGTTCCCGGTTTTGATGTTTTGCTTTACTGCG
AAAGAGGACGACAAAGAGGAGGATTGGGGGGGACTTAAGACGTCATCGTG
A

Synonyms

Publications