jgi.p|Nanoce1779_2|628202, mRNA_2044 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628202
Unique Name	mRNA_2044
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1668
Alignment location	scaffold_4:630084..632036 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628288
Track	FilteredModels2
ProteinId	628202

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:630084..632036 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628202	gene_2044	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628202	mRNA_2044-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2044	CDS_2044	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:630084..632036+
coding sequence from alignment at scaffold_4:630084..632036+

mRNA sequence

>mRNA_2044 ID=mRNA_2044|Name=jgi.p|Nanoce1779_2|628202|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
ACACAGGTACCGCAGCCAAGGATCACAGCACAAGAACGGGACAAAGCCCA
TGGCGCGCTTCAGTCGGCTGGCCCGGGAGCTGGAGCTGCTGCGCACGGAT
CCACCGCCCGGCGTCGCGGCTTGGCTAGTGGACGAGGCCGACCTCTCGCG
CTTCCATGCCAGTATCCAAGGCCCGGAAAGCACGCCCTACGCCGCTGGCC
TCTTCCGTCTCGAACTCGAAGTTTCGGCCCGATACCCTTTTGAGCCCCCA
AAGGTTCGCTTTCTGACGCCCGTCTTCCATCCCAATGTCGATGACTGCGG
TCGGATTTGCCTGGATAGCCTAAAGCCCCAGCCCCAAGGTTCCTGGACTC
CGTCATTGAGCATCCCAACACTTCTCACCACGCTTCGCCTTCTCCTCGCT
CACCCAAATGCGGATGATGGGTTAGCACCTGAGCCGACTGCTCTTTACCA
ACGGGATTTGCGAGGGTTTGAAAGGAGGGCAAGGGATCACACGGCGCAGC
ATGCGATGGGAGAAGAGGGTGAGACGACTTTGCCGCGAGGAGATATGAAG
ACGGGGGAGGGCAAGGACACAGACGAGGACAAAAATGAAGGCGTGGATGA
GGACGAGGATAGTAAGATGCACGTGGCGGGGGATGATAATGATTCCACTT
CGTCGTCAAGTAATTTAAGTGATGGGCAAGCGACGGATGGAGGGTCTCGC
AGAAGCGCCACCGCTAGTCGTGCCAGTCAAGCAACCCTCAGGAGTCACGG
CCCGTCGTCGCCATCCTTTCCTGGACAGCAGCAACAGCACCTGCAGCTGC
AGCTCCACGAGGAGGAGGAAGAACGAGGGTGGGACAGCGATGTGAGCATC
TGTGGCGATGATGGTGGGGCATCATCATCCTCGTCTTCCTCCACCCTTTC
CGATGACGACGATGACGAGAGCATTAGCCCAAACAACTCTCTTGGTCACG
GGCAAGGGAGCTGGAGGGGGGCGAACGGGAGGGAGGGAGGGAAGAATGGC
GAAGCTTTTGTGACGAGCGCTGAGGGGATGCCGCCACGGAAGCGGGCCCG
AGGCAGCGCGACTAGCAGTATTGCATCGTAGGATCTGGTCTGTTAGAAGA
GTAGATTTAGTGTATGTTTTGATGTGTGCATGGTTAGATGTGGCCGTTTG
ATAGTTGGAATAGGTAGGGTAGGGGTTCGATGGTTTAGAGAAAGAAAGGT
AGGGTGGATGAAGTGAGTGCATGCGTCGTGCGAGTGATAGACGCGAACAA
CATTACCGGAAAAGAGAGAAGAGGAAAGAATCGTGCTGGCTCAGTGTACA
GGAGACATGAATGGTAGGGAAGTAAGCAAGGGGTGGATATGCTGGTCAGA
GATGCAGCCGAACATGCCAGTAAGCAGTATGCTTTGTGTTTTATGTGCTT
GTTAGCGGCAAATTAGATCTGGTCAAAGCGCCCGTAACTGTCTTCTTGGG
GTTGACCCTGTGAGTGTAATAGTGTAAAGTGAGGGCTATGAAAAAAAATG
CAGGAAAAAACAAACACGTCAAGAACAGCGGGAAAACATAGAAATCGGTT
TGTCTTCAAAACTGACACTCAAATTGGACCACGTAGAGAGAAACAGGGAG
TCAAGTCAGCATTTTGAATTTTTTGGCGGTTTCCATCCAAGCTTCACGCC
TTTCTTCGGTGGTAGTCG

protein sequence of jgi.p|Nanoce1779_2|628202

>mRNA_2044-protein ID=mRNA_2044-protein|Name=jgi.p|Nanoce1779_2|628202|organism=Nannochloropsis oceanica|type=polypeptide|length=344bp
MARFSRLARELELLRTDPPPGVAAWLVDEADLSRFHASIQGPESTPYAAG
LFRLELEVSARYPFEPPKVRFLTPVFHPNVDDCGRICLDSLKPQPQGSWT
PSLSIPTLLTTLRLLLAHPNADDGLAPEPTALYQRDLRGFERRARDHTAQ
HAMGEEGETTLPRGDMKTGEGKDTDEDKNEGVDEDEDSKMHVAGDDNDST
SSSSNLSDGQATDGGSRRSATASRASQATLRSHGPSSPSFPGQQQQHLQL
QLHEEEEERGWDSDVSICGDDGGASSSSSSSTLSDDDDDESISPNNSLGH
GQGSWRGANGREGGKNGEAFVTSAEGMPPRKRARGSATSSIAS*

mRNA from alignment at scaffold_4:630084..632036+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2044 ID=mRNA_2044|Name=jgi.p|Nanoce1779_2|628202|organism=Nannochloropsis oceanica|type=mRNA|length=1953bp|location=Sequence derived from alignment at scaffold_4:630084..632036+ (Nannochloropsis oceanica)
ACACAGGTACCGCAGCCAAGGATCACAGCACAAGAACGGGACAAAGCCCA
TGGCGCGCTTCAGTCGGCTGGCCCGGGAGCTGGAGCTGCTGCGCACGGAT
CCACCGCCCGGCGTCGCGGCTTGGCTAGTGGACGAGGCCGACCTCTCGCG
CTTCCATGCCAGTAAGTTGTAAGGGAATACGATGGGGGTAGTGTGTACAG
GCGTGAAGGGGAATGGGGAAAATGTGCCGGGCGCCACCTGTTCAATATTC
ACTTGCTTTCCATCTTACCCGCCATCGACTTATCCGAACGCGACGCATTC
TTCTTGCCGGTCTCTCCCACCCCCTCACGTTGTGCCGCGCAAACCTGCTG
GAAGTCACGCTCTTTCCCTGTATCCTCTCACACTCGACACATGACCTCGT
GCTAATTTCTTTTTCGTCCCTCCCCCCCTCCGTACTCCCCCTCTAGGTAT
CCAAGGCCCGGAAAGCACGCCCTACGCCGCTGGCCTCTTCCGTCTCGAAC
TCGAAGTTTCGGCCCGATACCCTTTTGAGCCCCCAAAGGTTCGCTTTCTG
ACGCCCGTCTTCCATCCCAATGTCGATGACTGCGGTCGGATTTGCCTGGA
TAGCCTAAAGCCCCAGCCCCAAGGTTCCTGGACTCCGTCATTGAGCATCC
CAACACTTCTCACCACGCTTCGCCTTCTCCTCGCTCACCCAAATGCGGAT
GATGGGTTAGCACCTGAGCCGACTGCTCTTTACCAACGGGATTTGCGAGG
GTTTGAAAGGAGGGCAAGGGATCACACGGCGCAGCATGCGATGGGAGAAG
AGGGTGAGACGACTTTGCCGCGAGGAGATATGAAGACGGGGGAGGGCAAG
GACACAGACGAGGACAAAAATGAAGGCGTGGATGAGGACGAGGATAGTAA
GATGCACGTGGCGGGGGATGATAATGATTCCACTTCGTCGTCAAGTAATT
TAAGTGATGGGCAAGCGACGGATGGAGGGTCTCGCAGAAGCGCCACCGCT
AGTCGTGCCAGTCAAGCAACCCTCAGGAGTCACGGCCCGTCGTCGCCATC
CTTTCCTGGACAGCAGCAACAGCACCTGCAGCTGCAGCTCCACGAGGAGG
AGGAAGAACGAGGGTGGGACAGCGATGTGAGCATCTGTGGCGATGATGGT
GGGGCATCATCATCCTCGTCTTCCTCCACCCTTTCCGATGACGACGATGA
CGAGAGCATTAGCCCAAACAACTCTCTTGGTCACGGGCAAGGGAGCTGGA
GGGGGGCGAACGGGAGGGAGGGAGGGAAGAATGGCGAAGCTTTTGTGACG
AGCGCTGAGGGGATGCCGCCACGGAAGCGGGCCCGAGGCAGCGCGACTAG
CAGTATTGCATCGTAGGATCTGGTCTGTTAGAAGAGTAGATTTAGTGTAT
GTTTTGATGTGTGCATGGTTAGATGTGGCCGTTTGATAGTTGGAATAGGT
AGGGTAGGGGTTCGATGGTTTAGAGAAAGAAAGGTAGGGTGGATGAAGTG
AGTGCATGCGTCGTGCGAGTGATAGACGCGAACAACATTACCGGAAAAGA
GAGAAGAGGAAAGAATCGTGCTGGCTCAGTGTACAGGAGACATGAATGGT
AGGGAAGTAAGCAAGGGGTGGATATGCTGGTCAGAGATGCAGCCGAACAT
GCCAGTAAGCAGTATGCTTTGTGTTTTATGTGCTTGTTAGCGGCAAATTA
GATCTGGTCAAAGCGCCCGTAACTGTCTTCTTGGGGTTGACCCTGTGAGT
GTAATAGTGTAAAGTGAGGGCTATGAAAAAAAATGCAGGAAAAAACAAAC
ACGTCAAGAACAGCGGGAAAACATAGAAATCGGTTTGTCTTCAAAACTGA
CACTCAAATTGGACCACGTAGAGAGAAACAGGGAGTCAAGTCAGCATTTT
GAATTTTTTGGCGGTTTCCATCCAAGCTTCACGCCTTTCTTCGGTGGTAG
TCG

Coding sequence (CDS) from alignment at scaffold_4:630084..632036+

>mRNA_2044 ID=mRNA_2044|Name=jgi.p|Nanoce1779_2|628202|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at scaffold_4:630084..632036+ (Nannochloropsis oceanica)
ATGGCGCGCTTCAGTCGGCTGGCCCGGGAGCTGGAGCTGCTGCGCACGGA
TCCACCGCCCGGCGTCGCGGCTTGGCTAGTGGACGAGGCCGACCTCTCGC
GCTTCCATGCCAGTATCCAAGGCCCGGAAAGCACGCCCTACGCCGCTGGC
CTCTTCCGTCTCGAACTCGAAGTTTCGGCCCGATACCCTTTTGAGCCCCC
AAAGGTTCGCTTTCTGACGCCCGTCTTCCATCCCAATGTCGATGACTGCG
GTCGGATTTGCCTGGATAGCCTAAAGCCCCAGCCCCAAGGTTCCTGGACT
CCGTCATTGAGCATCCCAACACTTCTCACCACGCTTCGCCTTCTCCTCGC
TCACCCAAATGCGGATGATGGGTTAGCACCTGAGCCGACTGCTCTTTACC
AACGGGATTTGCGAGGGTTTGAAAGGAGGGCAAGGGATCACACGGCGCAG
CATGCGATGGGAGAAGAGGGTGAGACGACTTTGCCGCGAGGAGATATGAA
GACGGGGGAGGGCAAGGACACAGACGAGGACAAAAATGAAGGCGTGGATG
AGGACGAGGATAGTAAGATGCACGTGGCGGGGGATGATAATGATTCCACT
TCGTCGTCAAGTAATTTAAGTGATGGGCAAGCGACGGATGGAGGGTCTCG
CAGAAGCGCCACCGCTAGTCGTGCCAGTCAAGCAACCCTCAGGAGTCACG
GCCCGTCGTCGCCATCCTTTCCTGGACAGCAGCAACAGCACCTGCAGCTG
CAGCTCCACGAGGAGGAGGAAGAACGAGGGTGGGACAGCGATGTGAGCAT
CTGTGGCGATGATGGTGGGGCATCATCATCCTCGTCTTCCTCCACCCTTT
CCGATGACGACGATGACGAGAGCATTAGCCCAAACAACTCTCTTGGTCAC
GGGCAAGGGAGCTGGAGGGGGGCGAACGGGAGGGAGGGAGGGAAGAATGG
CGAAGCTTTTGTGACGAGCGCTGAGGGGATGCCGCCACGGAAGCGGGCCC
GAGGCAGCGCGACTAGCAGTATTGCATCGTAGATGGCGCGCTTCAGTCGG
CTGGCCCGGGAGCTGGAGCTGCTGCGCACGGATCCACCGCCCGGCGTCGC
GGCTTGGCTAGTGGACGAGGCCGACCTCTCGCGCTTCCATGCCAGTATCC
AAGGCCCGGAAAGCACGCCCTACGCCGCTGGCCTCTTCCGTCTCGAACTC
GAAGTTTCGGCCCGATACCCTTTTGAGCCCCCAAAGGTTCGCTTTCTGAC
GCCCGTCTTCCATCCCAATGTCGATGACTGCGGTCGGATTTGCCTGGATA
GCCTAAAGCCCCAGCCCCAAGGTTCCTGGACTCCGTCATTGAGCATCCCA
ACACTTCTCACCACGCTTCGCCTTCTCCTCGCTCACCCAAATGCGGATGA
TGGGTTAGCACCTGAGCCGACTGCTCTTTACCAACGGGATTTGCGAGGGT
TTGAAAGGAGGGCAAGGGATCACACGGCGCAGCATGCGATGGGAGAAGAG
GGTGAGACGACTTTGCCGCGAGGAGATATGAAGACGGGGGAGGGCAAGGA
CACAGACGAGGACAAAAATGAAGGCGTGGATGAGGACGAGGATAGTAAGA
TGCACGTGGCGGGGGATGATAATGATTCCACTTCGTCGTCAAGTAATTTA
AGTGATGGGCAAGCGACGGATGGAGGGTCTCGCAGAAGCGCCACCGCTAG
TCGTGCCAGTCAAGCAACCCTCAGGAGTCACGGCCCGTCGTCGCCATCCT
TTCCTGGACAGCAGCAACAGCACCTGCAGCTGCAGCTCCACGAGGAGGAG
GAAGAACGAGGGTGGGACAGCGATGTGAGCATCTGTGGCGATGATGGTGG
GGCATCATCATCCTCGTCTTCCTCCACCCTTTCCGATGACGACGATGACG
AGAGCATTAGCCCAAACAACTCTCTTGGTCACGGGCAAGGGAGCTGGAGG
GGGGCGAACGGGAGGGAGGGAGGGAAGAATGGCGAAGCTTTTGTGACGAG
CGCTGAGGGGATGCCGCCACGGAAGCGGGCCCGAGGCAGCGCGACTAGCA
GTATTGCATCGTAG

Synonyms

Publications