jgi.p|Nanoce1779_2|578838, mRNA_2042 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578838
Unique NamemRNA_2042
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length991
Alignment locationscaffold_4:626326..627971 -

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Properties
Property NameValue
TranscriptId578924
TrackFilteredModels2
ProteinId578838
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:626326..627971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578838gene_2042Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578838mRNA_2042-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2042CDS_2042Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2042 ID=mRNA_2042|Name=jgi.p|Nanoce1779_2|578838|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
AACCACAGCCCGCATCGACATCCTTTCATTTCTTCCCAAGAGTCATGTTT
GGCCGCCGAAAAACCGCCAAAGAGCAGCTCAGAGAGACAAAGAAAGAGAT
CAGACACAACGAGCGGGACATGGACCGCGAGCTACAAAACCTTACGCGGG
AAGAAGCCAAGCTCATCGTCGACATCAAGAAAGCGGCAGCCAGCGGCCAA
CATGGGATACTCAAGACCATGGCGAAGAATCTCGTGCAGTTGCGGACACA
AAAAGAAAGGCTTGTGACGATGAAGGCGACCGTCACAGGCGTTGGGTACA
AGGCGTCCATGATGCAGTCGCAGATGGCCGTTGGCCAGGTCATGGGGACT
ATGGCGGGGGTGATGGGTCAGATGAACGAGAAAATGAACGCTAAAGATAC
CGCTACAGTGATGGCGGAGTTTACGAAGCAAAACGAATACATGAATTTGA
AAGAGGATATGCTTGACGACGCACTGATGGACGCGTTCGACGGCGACGAC
GTGGAGGAGGAGGCCGACTCGGTGGTCAATCAAGTGCTAACTGAAATCGG
GTTGGACGTGGGCGCCAGAATGACAGACGCCCCAACAGGCAAGCTTTCTC
GACAGCAAGAGAAAGAAGCAGAGTCGGCGGAGGAAAAAGCAGCCATGGAG
ACTTTGGAAAAGCTCTTGCCAAGTATGCCATAGATGGTTGAAGAGGAGAA
GGGAAGAGGACGGGGGAGGTTGTGGAAATGAAGTTTACGGGACGAAAGAA
GAAAATTGTACAGGATGACAAGAGACTGGAAGAAGAAGGTATCCTGGCTC
TGTTTTTCTTTTCTTATTCAGGAGTTTCAGCCAGCGGCTGAGCACTCGTA
GGCAAAGAACACGAAACCAAAATAGTGTTCATTTACTGCCAAAACCCTCG
GTACTGTATGTGTTGCGATGGCACGCCCCCAAAACTTAAAAAGGTCCCCT
GCAGTAACAAGAGCGGCGAGACCTTGAGACCTTGGCCGGGG
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protein sequence of jgi.p|Nanoce1779_2|578838

>mRNA_2042-protein ID=mRNA_2042-protein|Name=jgi.p|Nanoce1779_2|578838|organism=Nannochloropsis oceanica|type=polypeptide|length=213bp
MFGRRKTAKEQLRETKKEIRHNERDMDRELQNLTREEAKLIVDIKKAAAS
GQHGILKTMAKNLVQLRTQKERLVTMKATVTGVGYKASMMQSQMAVGQVM
GTMAGVMGQMNEKMNAKDTATVMAEFTKQNEYMNLKEDMLDDALMDAFDG
DDVEEEADSVVNQVLTEIGLDVGARMTDAPTGKLSRQQEKEAESAEEKAA
METLEKLLPSMP*
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mRNA from alignment at scaffold_4:626326..627971-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2042 ID=mRNA_2042|Name=jgi.p|Nanoce1779_2|578838|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at scaffold_4:626326..627971- (Nannochloropsis oceanica)
AACCACAGCCCGCATCGACATCCTTTCATTTCTTCCCAAGAGTCATGTTT
GGCCGCCGAAAAACCGCCAAAGAGCAGCTCAGAGAGACAAAGAAAGAGAT
CAGACACAACGAGCGGGACATGGACCGCGAGCTACAAAACCTTACGCGGG
AAGAAGCCAAGCTCATCGTCGACATCAAGAAAGCGGCAGCCAGCGGCCAA
CATGGGATACTCAAGACCATGGCGAAGAATCTCGTGCAGTTGCGGACACA
AAAAGAAAGGCTTGTGACGATGAAGGCGACCGTCACAGGCGTTGGGTACA
AGGCGTCCATGATGCAGTCGCAGATGGCCGTTGGCCAGGTCATGGGGACT
ATGGCGGGGGTAAGTAGAAGCAGAGGAATTTCGGATTGATAGGAGAGGTC
GTTGACCATGGGATAGATCAGATGCAGGCACGGGAAGTTACTACTTAGGA
TTTCCTGACAGGCAGTGGCACTGCCTCACGTAAATTGCGACGTGATCATT
TCACCCTCTATTGCCGTAATCTTCCCTGTCCTTTATACCGACATGTATGG
GGCGATAGTGGATGCCTCGAAACAGTTCTGAAAGCGCACCGGCTACATGG
GATGGCACATGGGCACACTCACCCTTTCTCACTCCAACTAAATTACCTAT
GTATCCGCACAAAATTTTACACTGACAGGTGATGGGTCAGATGAACGAGA
AAATGAACGCTAAAGATACCGCTACAGTGATGGCGGAGTTTACGAAGCAA
AACGAATACATGAATTTGAAAGAGGATATGCTTGACGACGCACTGATGGA
CGCGGTAGGGAGGGAAGGAGGCAGGAGGGAGGGAGGGAGGAAGGGATGGG
GGGATGGGATGGGATGGGAATGGAATGGATGGGATGGCAAGTAGAGAGGG
CAGAACTGAAGGGTATATATGCAAGTTCTGAAAGCGCACTGAATTGATTG
AGTACATAACCCATTAACATTTTGTCATTCAAAGGCGCAGGAGAGGGATG
GATGGAGAGAGCAGGTAGAGCGTTGCTCTAGGAGGAATAGGTTTTCTCTT
TTTCAAAGCACGTCTCCTCACATTCCTGTTTTCAAGCGCCTAATCAATCT
TTTACACCGTGTCCCGTCCATTCTCTATATTAAAACACAGTTCGACGGCG
ACGACGTGGAGGAGGAGGCCGACTCGGTGGTCAATCAAGTGCTAACTGAA
ATCGGGTTGGACGTGGGCGCCAGAATGACAGACGCCCCAACAGGCAAGCT
TTCTCGACAGCAAGAGAAAGAAGCAGAGTCGGCGGAGGAAAAAGCAGCCA
TGGAGACTTTGGAAAAGCTCTTGCCAAGTATGCCATAGATGGTTGAAGAG
GAGAAGGGAAGAGGACGGGGGAGGTTGTGGAAATGAAGTTTACGGGACGA
AAGAAGAAAATTGTACAGGATGACAAGAGACTGGAAGAAGAAGGTATCCT
GGCTCTGTTTTTCTTTTCTTATTCAGGAGTTTCAGCCAGCGGCTGAGCAC
TCGTAGGCAAAGAACACGAAACCAAAATAGTGTTCATTTACTGCCAAAAC
CCTCGGTACTGTATGTGTTGCGATGGCACGCCCCCAAAACTTAAAAAGGT
CCCCTGCAGTAACAAGAGCGGCGAGACCTTGAGACCTTGGCCGGGG
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Coding sequence (CDS) from alignment at scaffold_4:626326..627971-

>mRNA_2042 ID=mRNA_2042|Name=jgi.p|Nanoce1779_2|578838|organism=Nannochloropsis oceanica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_4:626326..627971- (Nannochloropsis oceanica)
TTCGACGGCGACGACGTGGAGGAGGAGGCCGACTCGGTGGTCAATCAAGT
GCTAACTGAAATCGGGTTGGACGTGGGCGCCAGAATGACAGACGCCCCAA
CAGGCAAGCTTTCTCGACAGCAAGAGAAAGAAGCAGAGTCGGCGGAGGAA
AAAGCAGCCATGGAGACTTTGGAAAAGCTCTTGCCAAGTATGCCATAGGT
GATGGGTCAGATGAACGAGAAAATGAACGCTAAAGATACCGCTACAGTGA
TGGCGGAGTTTACGAAGCAAAACGAATACATGAATTTGAAAGAGGATATG
CTTGACGACGCACTGATGGACGCGATGTTTGGCCGCCGAAAAACCGCCAA
AGAGCAGCTCAGAGAGACAAAGAAAGAGATCAGACACAACGAGCGGGACA
TGGACCGCGAGCTACAAAACCTTACGCGGGAAGAAGCCAAGCTCATCGTC
GACATCAAGAAAGCGGCAGCCAGCGGCCAACATGGGATACTCAAGACCAT
GGCGAAGAATCTCGTGCAGTTGCGGACACAAAAAGAAAGGCTTGTGACGA
TGAAGGCGACCGTCACAGGCGTTGGGTACAAGGCGTCCATGATGCAGTCG
CAGATGGCCGTTGGCCAGGTCATGGGGACTATGGCGGGGTTCGACGGCGA
CGACGTGGAGGAGGAGGCCGACTCGGTGGTCAATCAAGTGCTAACTGAAA
TCGGGTTGGACGTGGGCGCCAGAATGACAGACGCCCCAACAGGCAAGCTT
TCTCGACAGCAAGAGAAAGAAGCAGAGTCGGCGGAGGAAAAAGCAGCCAT
GGAGACTTTGGAAAAGCTCTTGCCAAGTATGCCATAGGTGATGGGTCAGA
TGAACGAGAAAATGAACGCTAAAGATACCGCTACAGTGATGGCGGAGTTT
ACGAAGCAAAACGAATACATGAATTTGAAAGAGGATATGCTTGACGACGC
ACTGATGGACGCGATGTTTGGCCGCCGAAAAACCGCCAAAGAGCAGCTCA
GAGAGACAAAGAAAGAGATCAGACACAACGAGCGGGACATGGACCGCGAG
CTACAAAACCTTACGCGGGAAGAAGCCAAGCTCATCGTCGACATCAAGAA
AGCGGCAGCCAGCGGCCAACATGGGATACTCAAGACCATGGCGAAGAATC
TCGTGCAGTTGCGGACACAAAAAGAAAGGCTTGTGACGATGAAGGCGACC
GTCACAGGCGTTGGGTACAAGGCGTCCATGATGCAGTCGCAGATGGCCGT
TGGCCAGGTCATGGGGACTATGGCGGGGTTCGACGGCGACGACGTGGAGG
AGGAGGCCGACTCGGTGGTCAATCAAGTGCTAACTGAAATCGGGTTGGAC
GTGGGCGCCAGAATGACAGACGCCCCAACAGGCAAGCTTTCTCGACAGCA
AGAGAAAGAAGCAGAGTCGGCGGAGGAAAAAGCAGCCATGGAGACTTTGG
AAAAGCTCTTGCCAAGTATGCCATAGGTGATGGGTCAGATGAACGAGAAA
ATGAACGCTAAAGATACCGCTACAGTGATGGCGGAGTTTACGAAGCAAAA
CGAATACATGAATTTGAAAGAGGATATGCTTGACGACGCACTGATGGACG
CGATGTTTGGCCGCCGAAAAACCGCCAAAGAGCAGCTCAGAGAGACAAAG
AAAGAGATCAGACACAACGAGCGGGACATGGACCGCGAGCTACAAAACCT
TACGCGGGAAGAAGCCAAGCTCATCGTCGACATCAAGAAAGCGGCAGCCA
GCGGCCAACATGGGATACTCAAGACCATGGCGAAGAATCTCGTGCAGTTG
CGGACACAAAAAGAAAGGCTTGTGACGATGAAGGCGACCGTCACAGGCGT
TGGGTACAAGGCGTCCATGATGCAGTCGCAGATGGCCGTTGGCCAGGTCA
TGGGGACTATGGCGGGG
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Synonyms
Publications