jgi.p|Nanoce1779_2|578833, mRNA_2041 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578833
Unique Name	mRNA_2041
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	860
Alignment location	scaffold_4:624877..625736 -

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Properties


Property Name	Value
TranscriptId	578919
Track	FilteredModels2
ProteinId	578833

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:624877..625736 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578833	gene_2041	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578833	mRNA_2041-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2041	CDS_2041	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:624877..625736-
coding sequence from alignment at scaffold_4:624877..625736-

mRNA sequence

>mRNA_2041 ID=mRNA_2041|Name=jgi.p|Nanoce1779_2|578833|organism=Nannochloropsis oceanica|type=mRNA|length=860bp
GGATGGGTGGGTGGGGTAGGGCAAAAAGGATGCGAGCCTGATGGCGGCAG
TTATTCGTTCTTTTTGATATCCAAGGCACTTTGTATATCGCGTGCTTGTG
AGCTTGCATGCATCGAAGGCATGTATGGCAAACATTCATGTATTTCTGTG
CCTTATGGGAGCAAGAAGCGATTTGCCATGCGCATGCACCCGTCAAAATG
ACCCCCTCTTTCCACGGTCCCCGAATACTTTTTTCGGAAATGTTTTTAAG
GGCCACCGGCACTCCCTCTCCCTCACTTACACCCACACATCCCACCGACC
ACCAAAATATAGAGGAAGGAAAATACACTAAGACAGACTGCCTGCGCTTG
GCGAAGACCCTGACGGATCTGGCCCAGGTCCCCGCCCCATGCAAGGAAGT
CGTCCAAAACGAGCAAGCCATGCGTAAGGCCTTCGAGGGTGCCACTGTCA
CCGACCGAGCTCGCCACGCAATTGCCACGCGTAAGGGCACGGTGTCTCAC
CACCAGCTACAACGGCGCTTGACATCCACTTCTGAGACTATGGCCCGTTA
ATTTGGCCTCGTTCTGACACTGTGCGTGTGGGAGTGCTTGTATGTTTGGT
GTCTCGGTTGGTAAGGCGAGAAAGAGAAAAAGAGAGAGACATCAAGAAGA
AAATGTAAAACGCAGAGACCAGCAGAGTACGTGTGGCTGGTGTCTTCTTC
TTTTTATAAATAACGGCAGCAATGGCGGAAAGCGGAAAGTTACTGGAGGA
AGGAATAAGAGCTACTTACAAATGCACCAGCACGCACCATGATCATGATC
ATCGTCGATAAGCATAGGAGAGTGACGAAGGGCTGTCATGCCTTCCTTCC
CCTCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|578833

>mRNA_2041-protein ID=mRNA_2041-protein|Name=jgi.p|Nanoce1779_2|578833|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MHRRHVWQTFMYFCALWEQEAICHAHAPVKMTPSFHGPRILFSEMFLRAT
GTPSPSLTPTHPTDHQNIEEGKYTKTDCLRLAKTLTDLAQVPAPCKEVVQ
NEQAMRKAFEGATVTDRARHAIATRKGTVSHHQLQRRLTSTSETMAR*

mRNA from alignment at scaffold_4:624877..625736-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2041 ID=mRNA_2041|Name=jgi.p|Nanoce1779_2|578833|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at scaffold_4:624877..625736- (Nannochloropsis oceanica)
GGATGGGTGGGTGGGGTAGGGCAAAAAGGATGCGAGCCTGATGGCGGCAG
TTATTCGTTCTTTTTGATATCCAAGGCACTTTGTATATCGCGTGCTTGTG
AGCTTGCATGCATCGAAGGCATGTATGGCAAACATTCATGTATTTCTGTG
CCTTATGGGAGCAAGAAGCGATTTGCCATGCGCATGCACCCGTCAAAATG
ACCCCCTCTTTCCACGGTCCCCGAATACTTTTTTCGGAAATGTTTTTAAG
GGCCACCGGCACTCCCTCTCCCTCACTTACACCCACACATCCCACCGACC
ACCAAAATATAGAGGAAGGAAAATACACTAAGACAGACTGCCTGCGCTTG
GCGAAGACCCTGACGGATCTGGCCCAGGTCCCCGCCCCATGCAAGGAAGT
CGTCCAAAACGAGCAAGCCATGCGTAAGGCCTTCGAGGGTGCCACTGTCA
CCGACCGAGCTCGCCACGCAATTGCCACGCGTAAGGGCACGGTGTCTCAC
CACCAGCTACAACGGCGCTTGACATCCACTTCTGAGACTATGGCCCGTTA
ATTTGGCCTCGTTCTGACACTGTGCGTGTGGGAGTGCTTGTATGTTTGGT
GTCTCGGTTGGTAAGGCGAGAAAGAGAAAAAGAGAGAGACATCAAGAAGA
AAATGTAAAACGCAGAGACCAGCAGAGTACGTGTGGCTGGTGTCTTCTTC
TTTTTATAAATAACGGCAGCAATGGCGGAAAGCGGAAAGTTACTGGAGGA
AGGAATAAGAGCTACTTACAAATGCACCAGCACGCACCATGATCATGATC
ATCGTCGATAAGCATAGGAGAGTGACGAAGGGCTGTCATGCCTTCCTTCC
CCTCCCCCCC

Coding sequence (CDS) from alignment at scaffold_4:624877..625736-

>mRNA_2041 ID=mRNA_2041|Name=jgi.p|Nanoce1779_2|578833|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_4:624877..625736- (Nannochloropsis oceanica)
ATGCATCGAAGGCATGTATGGCAAACATTCATGTATTTCTGTGCCTTATG
GGAGCAAGAAGCGATTTGCCATGCGCATGCACCCGTCAAAATGACCCCCT
CTTTCCACGGTCCCCGAATACTTTTTTCGGAAATGTTTTTAAGGGCCACC
GGCACTCCCTCTCCCTCACTTACACCCACACATCCCACCGACCACCAAAA
TATAGAGGAAGGAAAATACACTAAGACAGACTGCCTGCGCTTGGCGAAGA
CCCTGACGGATCTGGCCCAGGTCCCCGCCCCATGCAAGGAAGTCGTCCAA
AACGAGCAAGCCATGCGTAAGGCCTTCGAGGGTGCCACTGTCACCGACCG
AGCTCGCCACGCAATTGCCACGCGTAAGGGCACGGTGTCTCACCACCAGC
TACAACGGCGCTTGACATCCACTTCTGAGACTATGGCCCGTTAA

Synonyms

Publications