jgi.p|Nanoce1779_2|578832, mRNA_2040 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578832
Unique NamemRNA_2040
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length703
Alignment locationscaffold_4:624145..624847 +

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Properties
Property NameValue
TranscriptId578918
TrackFilteredModels2
ProteinId578832
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:624145..624847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578832gene_2040Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578832mRNA_2040-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2040CDS_2040Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2040 ID=mRNA_2040|Name=jgi.p|Nanoce1779_2|578832|organism=Nannochloropsis oceanica|type=mRNA|length=703bp
TCTTGAGAATTCGTCTTCTTATCATTTCTTTTCCCTCACTCATATCCTTC
TCCGTTTGAAAGTTGTCGATCCACTACGACAAAGACGACGTGCGGTTCTT
TACGTCCACCTTGAATACACGCACACACAAATATTCATGCACGCATGCAC
CTGAACACCACACACACCCTCAAACAAACAAAACATGCCTCTCTTTCTTC
CTCCCTCAGATTGCTGGTTCTTGGTTTTTATCTTCGCCGCATTCTTGTGG
TTTGCTCCTTTGTTCTCTTTCCCTTCTCTTAAGGTAAATGGCTTTAGGAA
GTCTCTCCCTTCTTCGTCTTCAAATCATCCTCTGCCTGTAGCTTTCTATC
TAGGTAACAGCATGTACAAGCAGGAATCTAAGAGACAGTATGAAGGGCCA
ATTTCTGCTGGAAAAAATGTGGCGAGGTGGTAAAAGGGGGAAGGTGGGCG
GCCGAGAACCTTCCGATCCTCTACGCTTGTCCATGCACCAAAAGAAGCCA
CGCTCATACACGCTCACCTGCTTTCAAAAGCACTTTTTTTGGATTGAGAA
CTGTTTTCGCTTTTTTCATCTCTGACCCCTATTCTTGAATATTGTATATC
TTGTTCCTCTCTTTTTGTCATCTCTTGTTTCTTGCCTTCCATTTACTCGC
TTGTTTGATTGCATTGTTCTAAAAAAATGATTTTTTCGTTTTGTGGGGGG
GGG
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protein sequence of jgi.p|Nanoce1779_2|578832

>mRNA_2040-protein ID=mRNA_2040-protein|Name=jgi.p|Nanoce1779_2|578832|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MPLFLPPSDCWFLVFIFAAFLWFAPLFSFPSLKVNGFRKSLPSSSSNHPL
PVAFYLGNSMYKQESKRQYEGPISAGKNVARW*
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mRNA from alignment at scaffold_4:624145..624847+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2040 ID=mRNA_2040|Name=jgi.p|Nanoce1779_2|578832|organism=Nannochloropsis oceanica|type=mRNA|length=703bp|location=Sequence derived from alignment at scaffold_4:624145..624847+ (Nannochloropsis oceanica)
TCTTGAGAATTCGTCTTCTTATCATTTCTTTTCCCTCACTCATATCCTTC
TCCGTTTGAAAGTTGTCGATCCACTACGACAAAGACGACGTGCGGTTCTT
TACGTCCACCTTGAATACACGCACACACAAATATTCATGCACGCATGCAC
CTGAACACCACACACACCCTCAAACAAACAAAACATGCCTCTCTTTCTTC
CTCCCTCAGATTGCTGGTTCTTGGTTTTTATCTTCGCCGCATTCTTGTGG
TTTGCTCCTTTGTTCTCTTTCCCTTCTCTTAAGGTAAATGGCTTTAGGAA
GTCTCTCCCTTCTTCGTCTTCAAATCATCCTCTGCCTGTAGCTTTCTATC
TAGGTAACAGCATGTACAAGCAGGAATCTAAGAGACAGTATGAAGGGCCA
ATTTCTGCTGGAAAAAATGTGGCGAGGTGGTAAAAGGGGGAAGGTGGGCG
GCCGAGAACCTTCCGATCCTCTACGCTTGTCCATGCACCAAAAGAAGCCA
CGCTCATACACGCTCACCTGCTTTCAAAAGCACTTTTTTTGGATTGAGAA
CTGTTTTCGCTTTTTTCATCTCTGACCCCTATTCTTGAATATTGTATATC
TTGTTCCTCTCTTTTTGTCATCTCTTGTTTCTTGCCTTCCATTTACTCGC
TTGTTTGATTGCATTGTTCTAAAAAAATGATTTTTTCGTTTTGTGGGGGG
GGG
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Coding sequence (CDS) from alignment at scaffold_4:624145..624847+

>mRNA_2040 ID=mRNA_2040|Name=jgi.p|Nanoce1779_2|578832|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_4:624145..624847+ (Nannochloropsis oceanica)
ATGCCTCTCTTTCTTCCTCCCTCAGATTGCTGGTTCTTGGTTTTTATCTT
CGCCGCATTCTTGTGGTTTGCTCCTTTGTTCTCTTTCCCTTCTCTTAAGG
TAAATGGCTTTAGGAAGTCTCTCCCTTCTTCGTCTTCAAATCATCCTCTG
CCTGTAGCTTTCTATCTAGGTAACAGCATGTACAAGCAGGAATCTAAGAG
ACAGTATGAAGGGCCAATTTCTGCTGGAAAAAATGTGGCGAGGTGGTAA
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Synonyms
Publications