jgi.p|Nanoce1779_2|578829, mRNA_2038 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578829
Unique Name	mRNA_2038
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1755
Alignment location	scaffold_4:620991..622745 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578915
Track	FilteredModels2
ProteinId	578829

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:620991..622745 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578829	gene_2038	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578829	mRNA_2038-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2038	CDS_2038	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:620991..622745+
coding sequence from alignment at scaffold_4:620991..622745+

mRNA sequence

>mRNA_2038 ID=mRNA_2038|Name=jgi.p|Nanoce1779_2|578829|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp
ACAACAGAGGCGTGATGGTCCTATGGGTGATTCTCAGGGTTTTGTTACTA
CATCTCATGGCCTCTGGTAGCCATGCGTTTGTGCGCCCTCCATTACAAAA
GCCCGCTGCATGCAGACCGGCCACACCATCATCCGCGTTAGCACAAGCAC
CAACCGGCAACCTTCCAATGGCCTTCCCCGTGGAGGACCAGAAAGAACTC
AGGGCACTGTTAGAGGAAATCGTAGCGCTGATGAGCACGGATCCAAAAAC
GGCATTGGCAGAGGGGCGGTGGGTCAAGCTCATTTGTGGGGCGTCGTATC
AAGACCTACCCCGCGTTCAAGCTCTCTGCCTCGCCTACACATTAGCAGGC
GTGGATTGCATCGACTTGTCAGCCAGCAAGGCTGTCGTGACAGCCGCGGA
AGAAGGTGTGAATGCAGCCATGGCAGTAGCAAAGCAAACTTTAGGCAAGC
CTTTGCCTCGACGGCCGTGGCTTATGGTAAGTGTTAATGACCAAGAGGAT
CTGCACTTCCGCAAAGCCTCCTTCGACCCTGCTCGATGTCCCGTGGACTG
TCCTCGACCTTGTGAAAGTATCTGCCCTACACAGGCAATCCCCCCCTTGG
AAAAATTGACAGCACTTGCATCTGGAGTAAAGGAAGGGGTAGCGCACCAA
GATAGGTGCTATGGTTGTGGTCGTTGCTTGACTGTATGTCCCTTGGGCCT
CATTACTGCACATCCCTACCATGTGGAAGCGGCTGATGTGCTGAGCTCTT
TAGCAGGGCGTGTAGATGCATTGGAAATTCATACGAATGTCTCTTCGTTA
TCGGCATTCGAGGGGCAGGATCCGTTCGATGATTTGTGTCGGCGCATTCA
GGAATCTGTCTCGACCCTACGTGCGATCTCGGTAAGCTTTCCCTATATGG
GCGAGGCGGGTACCACGGCATTTTTACAAAGCCGGAGCGAACTTTTTGAT
CGATATTTTGGTCGCGACGGCGAGCGGGAAGGAAAGGAAGATGAGGGGGG
TAGTGGAGAGGGAGACCTCCGAAGGTCAAAGCTGCTGCATATTTGGCAGA
CGGACGGACGGCCCATGAGCGGGGACATAGGCAAAGGAACGACGCTTTCC
GCTGTTAAATTTGGAGAGATCGTTTTGCGGTCTCGGGCCCTGCCTTGGGC
TAGCCCGCGGCAAGGAGGTGAACAGCAGCATTTTTTGCAGTTGGCCGGTG
GGACGAACGCTTATACAGCCGAAAAGCTCGCGGCAGAGGGCTTGCTTTCT
CCGGCTTCGTTGTTGGGGAGCAGGGAAGAAGGAGGAAGGGATACCCAGTG
GGTGCATGGGTTGGCTTTTGGGGGGTTTGCGCGGATGGAGGTGGACAGAG
TGATGGCGGAGTGGGGTTTAGGCTCTGAGTCTTCATTGTTGGAGGCCCCA
CCACAGGCAATTGTGGCCGTAGTCAAGGCCGCCTTTGGAGTCGTCCGCCC
CGTGAAGGAACGGACAAAATAGTTTAAATGTCAAAAATGATAAATGTACA
AAAGGAAGCTGAAGAAGAGGTAAATGTAAAGGAAAAAGTATATGACAAAT
TGTTTTGGTCGGTGTCGAAGCCCGCGAAGCGGGGAGGTTACGGTTTTGAG
GTCCACCTCCACGCCACACAGTGCGACGCACAGAAAGGTCTCGTGACAGC
GCATTCCCTCCACTTGAACACAGGGCGCCTTTAGTCCACCGCTTATGGCA
CCGAGGTTGTCCTCACGGCGGGGCAGCATTATGCGAGCTCAAGCCGTCCT
CGCTC

protein sequence of jgi.p|Nanoce1779_2|578829

>mRNA_2038-protein ID=mRNA_2038-protein|Name=jgi.p|Nanoce1779_2|578829|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MVLWVILRVLLLHLMASGSHAFVRPPLQKPAACRPATPSSALAQAPTGNL
PMAFPVEDQKELRALLEEIVALMSTDPKTALAEGRWVKLICGASYQDLPR
VQALCLAYTLAGVDCIDLSASKAVVTAAEEGVNAAMAVAKQTLGKPLPRR
PWLMVSVNDQEDLHFRKASFDPARCPVDCPRPCESICPTQAIPPLEKLTA
LASGVKEGVAHQDRCYGCGRCLTVCPLGLITAHPYHVEAADVLSSLAGRV
DALEIHTNVSSLSAFEGQDPFDDLCRRIQESVSTLRAISVSFPYMGEAGT
TAFLQSRSELFDRYFGRDGEREGKEDEGGSGEGDLRRSKLLHIWQTDGRP
MSGDIGKGTTLSAVKFGEIVLRSRALPWASPRQGGEQQHFLQLAGGTNAY
TAEKLAAEGLLSPASLLGSREEGGRDTQWVHGLAFGGFARMEVDRVMAEW
GLGSESSLLEAPPQAIVAVVKAAFGVVRPVKERTK*

mRNA from alignment at scaffold_4:620991..622745+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2038 ID=mRNA_2038|Name=jgi.p|Nanoce1779_2|578829|organism=Nannochloropsis oceanica|type=mRNA|length=1755bp|location=Sequence derived from alignment at scaffold_4:620991..622745+ (Nannochloropsis oceanica)
ACAACAGAGGCGTGATGGTCCTATGGGTGATTCTCAGGGTTTTGTTACTA
CATCTCATGGCCTCTGGTAGCCATGCGTTTGTGCGCCCTCCATTACAAAA
GCCCGCTGCATGCAGACCGGCCACACCATCATCCGCGTTAGCACAAGCAC
CAACCGGCAACCTTCCAATGGCCTTCCCCGTGGAGGACCAGAAAGAACTC
AGGGCACTGTTAGAGGAAATCGTAGCGCTGATGAGCACGGATCCAAAAAC
GGCATTGGCAGAGGGGCGGTGGGTCAAGCTCATTTGTGGGGCGTCGTATC
AAGACCTACCCCGCGTTCAAGCTCTCTGCCTCGCCTACACATTAGCAGGC
GTGGATTGCATCGACTTGTCAGCCAGCAAGGCTGTCGTGACAGCCGCGGA
AGAAGGTGTGAATGCAGCCATGGCAGTAGCAAAGCAAACTTTAGGCAAGC
CTTTGCCTCGACGGCCGTGGCTTATGGTAAGTGTTAATGACCAAGAGGAT
CTGCACTTCCGCAAAGCCTCCTTCGACCCTGCTCGATGTCCCGTGGACTG
TCCTCGACCTTGTGAAAGTATCTGCCCTACACAGGCAATCCCCCCCTTGG
AAAAATTGACAGCACTTGCATCTGGAGTAAAGGAAGGGGTAGCGCACCAA
GATAGGTGCTATGGTTGTGGTCGTTGCTTGACTGTATGTCCCTTGGGCCT
CATTACTGCACATCCCTACCATGTGGAAGCGGCTGATGTGCTGAGCTCTT
TAGCAGGGCGTGTAGATGCATTGGAAATTCATACGAATGTCTCTTCGTTA
TCGGCATTCGAGGGGCAGGATCCGTTCGATGATTTGTGTCGGCGCATTCA
GGAATCTGTCTCGACCCTACGTGCGATCTCGGTAAGCTTTCCCTATATGG
GCGAGGCGGGTACCACGGCATTTTTACAAAGCCGGAGCGAACTTTTTGAT
CGATATTTTGGTCGCGACGGCGAGCGGGAAGGAAAGGAAGATGAGGGGGG
TAGTGGAGAGGGAGACCTCCGAAGGTCAAAGCTGCTGCATATTTGGCAGA
CGGACGGACGGCCCATGAGCGGGGACATAGGCAAAGGAACGACGCTTTCC
GCTGTTAAATTTGGAGAGATCGTTTTGCGGTCTCGGGCCCTGCCTTGGGC
TAGCCCGCGGCAAGGAGGTGAACAGCAGCATTTTTTGCAGTTGGCCGGTG
GGACGAACGCTTATACAGCCGAAAAGCTCGCGGCAGAGGGCTTGCTTTCT
CCGGCTTCGTTGTTGGGGAGCAGGGAAGAAGGAGGAAGGGATACCCAGTG
GGTGCATGGGTTGGCTTTTGGGGGGTTTGCGCGGATGGAGGTGGACAGAG
TGATGGCGGAGTGGGGTTTAGGCTCTGAGTCTTCATTGTTGGAGGCCCCA
CCACAGGCAATTGTGGCCGTAGTCAAGGCCGCCTTTGGAGTCGTCCGCCC
CGTGAAGGAACGGACAAAATAGTTTAAATGTCAAAAATGATAAATGTACA
AAAGGAAGCTGAAGAAGAGGTAAATGTAAAGGAAAAAGTATATGACAAAT
TGTTTTGGTCGGTGTCGAAGCCCGCGAAGCGGGGAGGTTACGGTTTTGAG
GTCCACCTCCACGCCACACAGTGCGACGCACAGAAAGGTCTCGTGACAGC
GCATTCCCTCCACTTGAACACAGGGCGCCTTTAGTCCACCGCTTATGGCA
CCGAGGTTGTCCTCACGGCGGGGCAGCATTATGCGAGCTCAAGCCGTCCT
CGCTC

Coding sequence (CDS) from alignment at scaffold_4:620991..622745+

>mRNA_2038 ID=mRNA_2038|Name=jgi.p|Nanoce1779_2|578829|organism=Nannochloropsis oceanica|type=CDS|length=1458bp|location=Sequence derived from alignment at scaffold_4:620991..622745+ (Nannochloropsis oceanica)
ATGGTCCTATGGGTGATTCTCAGGGTTTTGTTACTACATCTCATGGCCTC
TGGTAGCCATGCGTTTGTGCGCCCTCCATTACAAAAGCCCGCTGCATGCA
GACCGGCCACACCATCATCCGCGTTAGCACAAGCACCAACCGGCAACCTT
CCAATGGCCTTCCCCGTGGAGGACCAGAAAGAACTCAGGGCACTGTTAGA
GGAAATCGTAGCGCTGATGAGCACGGATCCAAAAACGGCATTGGCAGAGG
GGCGGTGGGTCAAGCTCATTTGTGGGGCGTCGTATCAAGACCTACCCCGC
GTTCAAGCTCTCTGCCTCGCCTACACATTAGCAGGCGTGGATTGCATCGA
CTTGTCAGCCAGCAAGGCTGTCGTGACAGCCGCGGAAGAAGGTGTGAATG
CAGCCATGGCAGTAGCAAAGCAAACTTTAGGCAAGCCTTTGCCTCGACGG
CCGTGGCTTATGGTAAGTGTTAATGACCAAGAGGATCTGCACTTCCGCAA
AGCCTCCTTCGACCCTGCTCGATGTCCCGTGGACTGTCCTCGACCTTGTG
AAAGTATCTGCCCTACACAGGCAATCCCCCCCTTGGAAAAATTGACAGCA
CTTGCATCTGGAGTAAAGGAAGGGGTAGCGCACCAAGATAGGTGCTATGG
TTGTGGTCGTTGCTTGACTGTATGTCCCTTGGGCCTCATTACTGCACATC
CCTACCATGTGGAAGCGGCTGATGTGCTGAGCTCTTTAGCAGGGCGTGTA
GATGCATTGGAAATTCATACGAATGTCTCTTCGTTATCGGCATTCGAGGG
GCAGGATCCGTTCGATGATTTGTGTCGGCGCATTCAGGAATCTGTCTCGA
CCCTACGTGCGATCTCGGTAAGCTTTCCCTATATGGGCGAGGCGGGTACC
ACGGCATTTTTACAAAGCCGGAGCGAACTTTTTGATCGATATTTTGGTCG
CGACGGCGAGCGGGAAGGAAAGGAAGATGAGGGGGGTAGTGGAGAGGGAG
ACCTCCGAAGGTCAAAGCTGCTGCATATTTGGCAGACGGACGGACGGCCC
ATGAGCGGGGACATAGGCAAAGGAACGACGCTTTCCGCTGTTAAATTTGG
AGAGATCGTTTTGCGGTCTCGGGCCCTGCCTTGGGCTAGCCCGCGGCAAG
GAGGTGAACAGCAGCATTTTTTGCAGTTGGCCGGTGGGACGAACGCTTAT
ACAGCCGAAAAGCTCGCGGCAGAGGGCTTGCTTTCTCCGGCTTCGTTGTT
GGGGAGCAGGGAAGAAGGAGGAAGGGATACCCAGTGGGTGCATGGGTTGG
CTTTTGGGGGGTTTGCGCGGATGGAGGTGGACAGAGTGATGGCGGAGTGG
GGTTTAGGCTCTGAGTCTTCATTGTTGGAGGCCCCACCACAGGCAATTGT
GGCCGTAGTCAAGGCCGCCTTTGGAGTCGTCCGCCCCGTGAAGGAACGGA
CAAAATAG

Synonyms

Publications