jgi.p|Nanoce1779_2|578828, mRNA_2037 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578828
Unique NamemRNA_2037
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1593
Alignment locationscaffold_4:619341..620933 -

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Properties
Property NameValue
TranscriptId578914
TrackFilteredModels2
ProteinId578828
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:619341..620933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578828gene_2037Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578828mRNA_2037-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2037CDS_2037Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2037 ID=mRNA_2037|Name=jgi.p|Nanoce1779_2|578828|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
GAGGACTCCCCGAGTCGTCGGATGACGACGAGGGAAGCGGTTTGCAACTG
CTTTCGGGACGATTTTCGCAGCACTGCAGCGCCATATCCACGAACACTTA
TCCCAAATACGCCCATTATACAGGCAAGACTTACATGCTGCAGGGAATAG
CACCCGGGGCCCGAAGCAGGGGAAGTATTAGGGACTCCCGCTAGCCAAGA
GCCCCCTCCTATTCCCTTACCCCCCCTTTCAAAGCAACAATTCGACAGTT
CAGATAAGCAGAGAACCAGCTGCCTCCTGTAATCCTAACCGCCCGCGCCT
ATTTATTGATTTATTCTCCTCTTTTTATTGGACGGCCATGTCCAGCCCCA
CCGCCGATACCGAATTCGCCCTTGCCCAGCCTTCCTGCGCGTTCGTCACG
CTCATCACCACGGACTCTTTCAGCCCAGGAGCCAGGGTTCTACTCCATTC
CTTGCAGAGTTCTATGAAGACGACACCAATTGCAAAGCACTTCAAGCCCG
CCATCATCCTGTTGGTCACGCCGCAAGTCACGGAAGGCATTCGGAAAGGC
CTGCGAGGATTGTGCGATGATTTAATTGAAGTGCAACCCATTCCCAACCC
TTACGCAACTCAAACCCACGTGAGCGGATGGGTGGACTCAGGCTTCACCA
AGCTTCGCATTTGGAGCTTACTTCGCTTTGAACGCGTGGTGTACCTAGAT
GCAGACTGCCTGGTGTTCAATGACTTGCGGGAGCTTTTTACCCTTGATGT
GGACTTTGCCGCGGCGCCTGATGTCTTCCCCCCGGACCGATTCAATGCTG
GCGTGTTGCTCTTGCGGCCGGACATTGATCTTTTTGACGATTTACTTCGG
CATGTAAACAGTCGGACTTTATCTTCTTACGACGGAGGAGACACAGGCTT
TCTCAACGCTTATTTACCCGACTGGTCTTCCGGCCCTCTTCTCCTCCCTA
CTACCACCGCGCGCAGCAGCGCAAGCGATACTTGCAGCAGCAGTAGTAGT
AGCATCAATACCTATGTATCCTTTCGGGGCATATCGTTGGCTCGATTGCC
TTTTGTGTGGAACGCACAACGCACGATGCACTGGATGACTCACGCCAAGG
CCCCGGGGTACTGGGATAGTATTGCACCGTCCATAAACATATTGCATTTT
TCATCGAGCCCTAAGCCGTGGGAATCTGAGGGGGCGATCAAGAAGGGGGA
GTTGGAAATGATATGGTGGGCGGAATTTGTCCAAGCACAAATGGCGGGGT
CCATGATGGGGGGAGAGATGACAAAATAGGGGGTGAAAAGAAGAACGAAA
GTAATGGGTTTGCCCATTTCTCCTTCTCAGCCATAATCCGTGGGAAGCAA
AAGTTGAGAGACACTGGTGGACAGTGTTTGGCAAATCGCACATTGCGGGG
GAAGATGATGCATGGAGTATTGAAATAGGAAGAGTGACATACAAGAGTAA
CGGGAGAATAAATACAATGATAAATAGTGAAAGGAGGCGCATTTCTAGAG
AACCAGAACAAGATGAAAGCAACACCAGATTGGAAAAACGAAGAACTGAT
GCTAACGAATATGCAGTGGCTGGAAAGATGTTTTTTGGCTCTC
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protein sequence of jgi.p|Nanoce1779_2|578828

>mRNA_2037-protein ID=mRNA_2037-protein|Name=jgi.p|Nanoce1779_2|578828|organism=Nannochloropsis oceanica|type=polypeptide|length=314bp
MSSPTADTEFALAQPSCAFVTLITTDSFSPGARVLLHSLQSSMKTTPIAK
HFKPAIILLVTPQVTEGIRKGLRGLCDDLIEVQPIPNPYATQTHVSGWVD
SGFTKLRIWSLLRFERVVYLDADCLVFNDLRELFTLDVDFAAAPDVFPPD
RFNAGVLLLRPDIDLFDDLLRHVNSRTLSSYDGGDTGFLNAYLPDWSSGP
LLLPTTTARSSASDTCSSSSSSINTYVSFRGISLARLPFVWNAQRTMHWM
THAKAPGYWDSIAPSINILHFSSSPKPWESEGAIKKGELEMIWWAEFVQA
QMAGSMMGGEMTK*
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mRNA from alignment at scaffold_4:619341..620933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2037 ID=mRNA_2037|Name=jgi.p|Nanoce1779_2|578828|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp|location=Sequence derived from alignment at scaffold_4:619341..620933- (Nannochloropsis oceanica)
GAGGACTCCCCGAGTCGTCGGATGACGACGAGGGAAGCGGTTTGCAACTG
CTTTCGGGACGATTTTCGCAGCACTGCAGCGCCATATCCACGAACACTTA
TCCCAAATACGCCCATTATACAGGCAAGACTTACATGCTGCAGGGAATAG
CACCCGGGGCCCGAAGCAGGGGAAGTATTAGGGACTCCCGCTAGCCAAGA
GCCCCCTCCTATTCCCTTACCCCCCCTTTCAAAGCAACAATTCGACAGTT
CAGATAAGCAGAGAACCAGCTGCCTCCTGTAATCCTAACCGCCCGCGCCT
ATTTATTGATTTATTCTCCTCTTTTTATTGGACGGCCATGTCCAGCCCCA
CCGCCGATACCGAATTCGCCCTTGCCCAGCCTTCCTGCGCGTTCGTCACG
CTCATCACCACGGACTCTTTCAGCCCAGGAGCCAGGGTTCTACTCCATTC
CTTGCAGAGTTCTATGAAGACGACACCAATTGCAAAGCACTTCAAGCCCG
CCATCATCCTGTTGGTCACGCCGCAAGTCACGGAAGGCATTCGGAAAGGC
CTGCGAGGATTGTGCGATGATTTAATTGAAGTGCAACCCATTCCCAACCC
TTACGCAACTCAAACCCACGTGAGCGGATGGGTGGACTCAGGCTTCACCA
AGCTTCGCATTTGGAGCTTACTTCGCTTTGAACGCGTGGTGTACCTAGAT
GCAGACTGCCTGGTGTTCAATGACTTGCGGGAGCTTTTTACCCTTGATGT
GGACTTTGCCGCGGCGCCTGATGTCTTCCCCCCGGACCGATTCAATGCTG
GCGTGTTGCTCTTGCGGCCGGACATTGATCTTTTTGACGATTTACTTCGG
CATGTAAACAGTCGGACTTTATCTTCTTACGACGGAGGAGACACAGGCTT
TCTCAACGCTTATTTACCCGACTGGTCTTCCGGCCCTCTTCTCCTCCCTA
CTACCACCGCGCGCAGCAGCGCAAGCGATACTTGCAGCAGCAGTAGTAGT
AGCATCAATACCTATGTATCCTTTCGGGGCATATCGTTGGCTCGATTGCC
TTTTGTGTGGAACGCACAACGCACGATGCACTGGATGACTCACGCCAAGG
CCCCGGGGTACTGGGATAGTATTGCACCGTCCATAAACATATTGCATTTT
TCATCGAGCCCTAAGCCGTGGGAATCTGAGGGGGCGATCAAGAAGGGGGA
GTTGGAAATGATATGGTGGGCGGAATTTGTCCAAGCACAAATGGCGGGGT
CCATGATGGGGGGAGAGATGACAAAATAGGGGGTGAAAAGAAGAACGAAA
GTAATGGGTTTGCCCATTTCTCCTTCTCAGCCATAATCCGTGGGAAGCAA
AAGTTGAGAGACACTGGTGGACAGTGTTTGGCAAATCGCACATTGCGGGG
GAAGATGATGCATGGAGTATTGAAATAGGAAGAGTGACATACAAGAGTAA
CGGGAGAATAAATACAATGATAAATAGTGAAAGGAGGCGCATTTCTAGAG
AACCAGAACAAGATGAAAGCAACACCAGATTGGAAAAACGAAGAACTGAT
GCTAACGAATATGCAGTGGCTGGAAAGATGTTTTTTGGCTCTC
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Coding sequence (CDS) from alignment at scaffold_4:619341..620933-

>mRNA_2037 ID=mRNA_2037|Name=jgi.p|Nanoce1779_2|578828|organism=Nannochloropsis oceanica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_4:619341..620933- (Nannochloropsis oceanica)
ATGTCCAGCCCCACCGCCGATACCGAATTCGCCCTTGCCCAGCCTTCCTG
CGCGTTCGTCACGCTCATCACCACGGACTCTTTCAGCCCAGGAGCCAGGG
TTCTACTCCATTCCTTGCAGAGTTCTATGAAGACGACACCAATTGCAAAG
CACTTCAAGCCCGCCATCATCCTGTTGGTCACGCCGCAAGTCACGGAAGG
CATTCGGAAAGGCCTGCGAGGATTGTGCGATGATTTAATTGAAGTGCAAC
CCATTCCCAACCCTTACGCAACTCAAACCCACGTGAGCGGATGGGTGGAC
TCAGGCTTCACCAAGCTTCGCATTTGGAGCTTACTTCGCTTTGAACGCGT
GGTGTACCTAGATGCAGACTGCCTGGTGTTCAATGACTTGCGGGAGCTTT
TTACCCTTGATGTGGACTTTGCCGCGGCGCCTGATGTCTTCCCCCCGGAC
CGATTCAATGCTGGCGTGTTGCTCTTGCGGCCGGACATTGATCTTTTTGA
CGATTTACTTCGGCATGTAAACAGTCGGACTTTATCTTCTTACGACGGAG
GAGACACAGGCTTTCTCAACGCTTATTTACCCGACTGGTCTTCCGGCCCT
CTTCTCCTCCCTACTACCACCGCGCGCAGCAGCGCAAGCGATACTTGCAG
CAGCAGTAGTAGTAGCATCAATACCTATGTATCCTTTCGGGGCATATCGT
TGGCTCGATTGCCTTTTGTGTGGAACGCACAACGCACGATGCACTGGATG
ACTCACGCCAAGGCCCCGGGGTACTGGGATAGTATTGCACCGTCCATAAA
CATATTGCATTTTTCATCGAGCCCTAAGCCGTGGGAATCTGAGGGGGCGA
TCAAGAAGGGGGAGTTGGAAATGATATGGTGGGCGGAATTTGTCCAAGCA
CAAATGGCGGGGTCCATGATGGGGGGAGAGATGACAAAATAG
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Synonyms
Publications