jgi.p|Nanoce1779_2|578826, mRNA_2036 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578826
Unique NamemRNA_2036
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length524
Alignment locationscaffold_4:618847..619370 -

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Properties
Property NameValue
TranscriptId578912
TrackFilteredModels2
ProteinId578826
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:618847..619370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578826gene_2036Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578826mRNA_2036-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2036CDS_2036Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2036 ID=mRNA_2036|Name=jgi.p|Nanoce1779_2|578826|organism=Nannochloropsis oceanica|type=mRNA|length=524bp
CAGTGGCTGGAAAGATGTTTTTTGGCTCTCTTTTTTGTTTTTTCCATTGC
TGACCACACACTCAAAAAAGCTCACGTAGAAACATTCCCACTCTCAGCTA
TACGATCAACTGGCAATGCCAGGCCTAGAAGGACCCGCCTTGTTGATGTT
GTTCTTGTTGATGGTGCTGCTGCTGCTCTTGTCGTTGTCCTTGCCGTTGT
TCCTATGGTTGTTGCCTCCCATTCATTGTTTTCCTCGTTCTACATGCCCG
GCATCCCTCCTCTCGCTCTCTGCTCTCTCCGTGCAGTACTTTTTCCCTCT
CGGCCCATCCCTTTCCTTATTTTTCTACTAGTATCCAACCATTCATAATA
CGATGACCATTCACCTATGCGTGTCCACGACCTCTCTCTCTTTGCTCTGC
TTCCTCTTTTCCACGAAACATCTCACTTCCACACGCAATAATTTAACCTC
CTTCCATCCATCCTATCCCTGCTCCAACTCTTTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTC
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protein sequence of jgi.p|Nanoce1779_2|578826

>mRNA_2036-protein ID=mRNA_2036-protein|Name=jgi.p|Nanoce1779_2|578826|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MPGLEGPALLMLFLLMVLLLLLSLSLPLFLWLLPPIHCFPRSTCPASLLS
LSALSVQYFFPLGPSLSLFFY*
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mRNA from alignment at scaffold_4:618847..619370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2036 ID=mRNA_2036|Name=jgi.p|Nanoce1779_2|578826|organism=Nannochloropsis oceanica|type=mRNA|length=524bp|location=Sequence derived from alignment at scaffold_4:618847..619370- (Nannochloropsis oceanica)
CAGTGGCTGGAAAGATGTTTTTTGGCTCTCTTTTTTGTTTTTTCCATTGC
TGACCACACACTCAAAAAAGCTCACGTAGAAACATTCCCACTCTCAGCTA
TACGATCAACTGGCAATGCCAGGCCTAGAAGGACCCGCCTTGTTGATGTT
GTTCTTGTTGATGGTGCTGCTGCTGCTCTTGTCGTTGTCCTTGCCGTTGT
TCCTATGGTTGTTGCCTCCCATTCATTGTTTTCCTCGTTCTACATGCCCG
GCATCCCTCCTCTCGCTCTCTGCTCTCTCCGTGCAGTACTTTTTCCCTCT
CGGCCCATCCCTTTCCTTATTTTTCTACTAGTATCCAACCATTCATAATA
CGATGACCATTCACCTATGCGTGTCCACGACCTCTCTCTCTTTGCTCTGC
TTCCTCTTTTCCACGAAACATCTCACTTCCACACGCAATAATTTAACCTC
CTTCCATCCATCCTATCCCTGCTCCAACTCTTTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTC
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Coding sequence (CDS) from alignment at scaffold_4:618847..619370-

>mRNA_2036 ID=mRNA_2036|Name=jgi.p|Nanoce1779_2|578826|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_4:618847..619370- (Nannochloropsis oceanica)
ATGCCAGGCCTAGAAGGACCCGCCTTGTTGATGTTGTTCTTGTTGATGGT
GCTGCTGCTGCTCTTGTCGTTGTCCTTGCCGTTGTTCCTATGGTTGTTGC
CTCCCATTCATTGTTTTCCTCGTTCTACATGCCCGGCATCCCTCCTCTCG
CTCTCTGCTCTCTCCGTGCAGTACTTTTTCCCTCTCGGCCCATCCCTTTC
CTTATTTTTCTACTAG
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Synonyms
Publications