Properties
| Property Name | Value |
|---|
| TranscriptId | 578897 |
| Track | FilteredModels2 |
| ProteinId | 578811 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:612892..615978 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2034 ID=mRNA_2034|Name=jgi.p|Nanoce1779_2|578811|organism=Nannochloropsis oceanica|type=mRNA|length=2833bp
TCTGGCTAACGGCTCCTCCATTCGAAATTGCCGTTAGAATCGAAGCGACA
CTCCCATGCGCTGGACAGAGACAAGGCCACACTCACAGACTGCTCCCCAA
ACGTGACCAGTACACGCATGGTTTTGAGGAACTGAATCTAAAATACTTCG
TCGATGCAAGCAAATAGCAGGTCACGCGTCGTCTCTTCTTTCTCTTTATA
GAAGCCAGAGGGAGAGGAGGCAGAGAAGTGCATGGCGTGGCTTCGGTGCC
CCCTCGCCTTCGTCCCTTGTCCCTTCTTCTCCCCTTTATGACTACATCAG
GCTATATTGCTCACAACTATATTAATACCACAAACATACATAGCCCGTCC
TTTCCCATCCAGGCCGACACCAAAGTATAATCACACACTTATGTGAGTCG
TCCGATGAGAATGTCCCCGTCTCAACGTAATTCTGAAGCTTCCCGCGAGG
GAGCCAGGCTCGCGCGTCGCATACCCCAAAGGAAGAAATAGACGTCCTTT
TAATCTCATTGCCACCCTTGTTAACACAGTATGTCCATTCCGCACATCAC
CACGACACAGATTACACCTCGAGCGAGCCCGCAACAGAGGATGTGTCGCG
GCGGTAGAACACTCAGTCTAGCCCTCGTGGCGTTGTTGGCTGGAAGCAGC
TTCGTCGCCGCCGGACCAAAGGTTCAGTCCTTGTCCTGCTCTCCAGGCAT
TGGAGACGCCCGCAATGCGGACGTGATGGTCACGTGCGCCCTGCGTGTGG
TGGATAAGGAGAGCGAAATTGACTTCGCTTACACGCGCCTCGTCTCCCCC
TCGGGCAAGTTTTCCCTGCCCTTGCTCTTTGATGGGAAGAAGTCTTTTGG
AATGACATCCTATTCGGGCGCCAATCTGGCTGCCAGCGCCATCATCCCCC
GCCATGCTGAGCCTGGAAACTGGCAGTTGGACTTCAGCGGCGTGGAGGGC
CTGGAAGTAGTGAACAAGAAGGGGGACAAGATCATGGTCACCTCCAAGGA
AGCGAAAGACTTGGGCCTCTCCCGCTTTGTCAAGATCTACTCCCCCGACG
ACAAGACACCTCCCTATATCAAAGACGTTATCTGCGCGACCCCCGTCCTG
CTGAATGTCACCCGCGATACCTTCCATGTGAAGTGTGAATTCACGGTCCA
AGATACAGGGTCGGGGGTCTCGAACGTCCGTGCCAGTTTCGTCTCTCCCC
AGGCTGATGCCCTCCTGCATATGACCGCGGATGTGAACAAAGACATCATC
TCCTCCGATCCCAAAACCGGCGAAATTATTCTCTCCGCTTCCGTCCCCGT
CTTCCCCGGCATGCCCTCAGGGATATGGAAAATGGTGACCGCCATGCCTC
TTGCCCCCTACGTCCAAGATCGGAACCGCAACGGCTTTGCCTACAAAGGT
GTGGAGCCCTCCGTCCTGTGGACCCGTCCCCAGTTCGAAGTATTTTCTGC
CCCTGATACTACTCCTCCAGTGATCCAGAAGTTTGGCTGCTCAGCAACAC
AAGTGATCATCCCCTTTGCGGGAGAGGATGTCTACACGTGTCAATTGGTG
GTGCAGGATGATTTATCTGGCTTCGCGTATGGGGAGCTTGCGTTTGAAAA
CCCGGACCGAAACAGCACAGCCACTTTGCGGTTTGATGCTAACACTCGTC
AAGTCCAGTTTTCCCGAGGAGGCATTTATGTGCCTACGCTCACTTTTGAC
CCGACGGCGCCGGGGGGCATGTGGGCAGTTAGCAAGGCGGGCTTGATGTT
GAGTGACGCTGCGGGGAACGTGATCAATTATAATCCTAAGGAGTTGAACG
ATCGGTCATACCCTACCTTTTTGTTGGTTTCAAAGACGGACATGCCTCCT
AAAGAGGAAATCAAGAGCCCGGCATCTGCTGTTAAGGTATCATATTCCAT
CGTGTTGGCTTCGTTTGTTGGACTTTTCCTCTTGCAGCGCGGATAAAGAT
CAAGCAAAGCAGTGGTTAGGTGGTATTTACAGTTGCAGCAGTAGTGAAGT
AAGCGGACGAATAGAGGAACAATAAGAGCATGGATATTCATTCAATCGAT
CTGGCGCGTCTCTAGGAAGGGCGTCGCAGTTCAGAGAGAGAGGGAGAGAG
AGGGAGAAAGAGGGTGAGGGGACCGGCGTTGGCAGTGGAGGAGGACGAGG
AATCTATGTGCAGCAGATAGGGAGCTGGCGGGAGGGAGGAATCGATGTAC
GATGGGGAAAAGATGTTAAAAATTGAGTGCGAATTGAAGGGTGAGAGAAC
GACGAGGATGTACCCATGTTCCTTACAAAACTCCCTTTTGGGTGTATTTG
GTGGGAGGGGAGGAGAAGGGAGAGAGGCTTTGTGCGCGCTTGCGCTCCCT
CTCCCAACATAAGAAAAAGATTTTTTAAAAAACGAACACGAACATATTCG
TTAAGCGCTACCAAAAGCGCTGCATGGGTGTTTGATTTTTGTACTGCCTC
ATTTGCGTACTAGGGGTGAGGAGGCTGTAAAGGACAGCTAACACGCTTCG
TTACCATGTCTTTTTGCCTTGAGGATAAAATGATGACTACAGAGGCATCT
GTCAAAGACTGAAGTAGATCACTACCTAGCATACAGAGGTGTTGTGTGTG
CCCCCTGATACGTGTGGTAGAGAACATGCTTTACATTTATTTGAGTCAGG
AGGGGCAAAAAGGCTATAGGATGCCTCCGGCCCCGAACATTTGCCTTAGT
AATAATATTAGCGACAATCAAAACACATGGTTGGAAAACTCATCAATTAT
TGTAGTATTGTAGCCTGTATAGCCCTTGTGTGTGCTGTCTTATCACGCAG
ACGCATGGTCTTTAGTTTCAAGTGACGCTTCAG back to topprotein sequence of jgi.p|Nanoce1779_2|578811 >mRNA_2034-protein ID=mRNA_2034-protein|Name=jgi.p|Nanoce1779_2|578811|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MSIPHITTTQITPRASPQQRMCRGGRTLSLALVALLAGSSFVAAGPKVQS
LSCSPGIGDARNADVMVTCALRVVDKESEIDFAYTRLVSPSGKFSLPLLF
DGKKSFGMTSYSGANLAASAIIPRHAEPGNWQLDFSGVEGLEVVNKKGDK
IMVTSKEAKDLGLSRFVKIYSPDDKTPPYIKDVICATPVLLNVTRDTFHV
KCEFTVQDTGSGVSNVRASFVSPQADALLHMTADVNKDIISSDPKTGEII
LSASVPVFPGMPSGIWKMVTAMPLAPYVQDRNRNGFAYKGVEPSVLWTRP
QFEVFSAPDTTPPVIQKFGCSATQVIIPFAGEDVYTCQLVVQDDLSGFAY
GELAFENPDRNSTATLRFDANTRQVQFSRGGIYVPTLTFDPTAPGGMWAV
SKAGLMLSDAAGNVINYNPKELNDRSYPTFLLVSKTDMPPKEEIKSPASA
VKVSYSIVLASFVGLFLLQRG* back to topmRNA from alignment at scaffold_4:612892..615978- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2034 ID=mRNA_2034|Name=jgi.p|Nanoce1779_2|578811|organism=Nannochloropsis oceanica|type=mRNA|length=3087bp|location=Sequence derived from alignment at scaffold_4:612892..615978- (Nannochloropsis oceanica)
TCTGGCTAACGGCTCCTCCATTCGAAATTGCCGTTAGAATCGAAGCGACA
CTCCCATGCGCTGGACAGAGACAAGGCCACACTCACAGACTGCTCCCCAA
ACGTGACCAGTACACGCATGGTTTTGAGGAACTGAATCTAAAATACTTCG
TCGATGCAAGCAAATAGCAGGTCACGCGTCGTCTCTTCTTTCTCTTTATA
GAAGCCAGAGGGAGAGGAGGCAGAGAAGTGCATGGCGTGGCTTCGGTGCC
CCCTCGCCTTCGTCCCTTGTCCCTTCTTCTCCCCTTTATGACTACATCAG
GCTATATTGCTCACAACTATATTAATACCACAAACATACATAGCCCGTCC
TTTCCCATCCAGGCCGACACCAAAGTATAATCACACACTTATGTGAGTCG
TCCGATGAGAATGTCCCCGTCTCAACGTAATTCTGAAGCTTCCCGCGAGG
GAGCCAGGCTCGCGCGTCGCATACCCCAAAGGAAGAAATAGACGTCCTTT
TAATCTCATTGCCACCCTTGTTAACACAGTATGTCCATTCCGCACATCAC
CACGACACAGATTACACCTCGAGCGAGCCCGCAACAGAGGATGTGTCGCG
GCGGTAGAACACTCAGTCTAGCCCTCGTGGCGTTGTTGGCTGGAAGCAGC
TTCGTCGCCGCCGGACCAAAGGTTCAGTCCTTGTCCTGCTCTCCAGGCAT
TGGAGACGCCCGCAATGCGGACGTGATGGTCACGTGCGCCCTGCGTGTGG
TGGATAAGGAGAGCGAAATTGACTTCGCTTACACGCGCCTCGTCTCCCCC
TCGGGCAAGTTTTCCCTGCCCTTGCTCTTTGATGGGAAGAAGTCTTTTGG
AATGACATCCTATTCGGGCGCCAATCTGGCTGCCAGCGCCATCATCCCCC
GCCATGCTGAGCCTGGAAACTGGCAGGTACGTGCGTGGAGGGATTCGATT
TGACGGTAGTTTGGGAATGGTATATGTGCGTGTACATGGTGAGAGAAGGG
GTATGTGCGGAGACTTATCGAAGCGACGCGAAGGTAGTTGCTGACGGCAT
GTCCTGCACGCATTTTCTTATGTCTCACAAGCGACCCATTGCGCAGCGTG
GCAGTGCTCTTGTCTCCGCCGCCTTCCCTAACCCTCAATCACACACACAC
ACTCCATTACTTTCACTTACTTCTCAATAGTTGGACTTCAGCGGCGTGGA
GGGCCTGGAAGTAGTGAACAAGAAGGGGGACAAGATCATGGTCACCTCCA
AGGAAGCGAAAGACTTGGGCCTCTCCCGCTTTGTCAAGATCTACTCCCCC
GACGACAAGACACCTCCCTATATCAAAGACGTTATCTGCGCGACCCCCGT
CCTGCTGAATGTCACCCGCGATACCTTCCATGTGAAGTGTGAATTCACGG
TCCAAGATACAGGGTCGGGGGTCTCGAACGTCCGTGCCAGTTTCGTCTCT
CCCCAGGCTGATGCCCTCCTGCATATGACCGCGGATGTGAACAAAGACAT
CATCTCCTCCGATCCCAAAACCGGCGAAATTATTCTCTCCGCTTCCGTCC
CCGTCTTCCCCGGCATGCCCTCAGGGATATGGAAAATGGTGACCGCCATG
CCTCTTGCCCCCTACGTCCAAGATCGGAACCGCAACGGCTTTGCCTACAA
AGGTGTGGAGCCCTCCGTCCTGTGGACCCGTCCCCAGTTCGAAGTATTTT
CTGCCCCTGATACTACTCCTCCAGTGATCCAGAAGTTTGGCTGCTCAGCA
ACACAAGTGATCATCCCCTTTGCGGGAGAGGATGTCTACACGTGTCAATT
GGTGGTGCAGGATGATTTATCTGGCTTCGCGTATGGGGAGCTTGCGTTTG
AAAACCCGGACCGAAACAGCACAGCCACTTTGCGGTTTGATGCTAACACT
CGTCAAGTCCAGTTTTCCCGAGGAGGCATTTATGTGCCTACGCTCACTTT
TGACCCGACGGCGCCGGGGGGCATGTGGGCAGTTAGCAAGGCGGGCTTGA
TGTTGAGTGACGCTGCGGGGAACGTGATCAATTATAATCCTAAGGAGTTG
AACGATCGGTCATACCCTACCTTTTTGTTGGTTTCAAAGACGGACATGCC
TCCTAAAGAGGAAATCAAGAGCCCGGCATCTGCTGTTAAGGTATCATATT
CCATCGTGTTGGCTTCGTTTGTTGGACTTTTCCTCTTGCAGCGCGGATAA
AGATCAAGCAAAGCAGTGGTTAGGTGGTATTTACAGTTGCAGCAGTAGTG
AAGTAAGCGGACGAATAGAGGAACAATAAGAGCATGGATATTCATTCAAT
CGATCTGGCGCGTCTCTAGGAAGGGCGTCGCAGTTCAGAGAGAGAGGGAG
AGAGAGGGAGAAAGAGGGTGAGGGGACCGGCGTTGGCAGTGGAGGAGGAC
GAGGAATCTATGTGCAGCAGATAGGGAGCTGGCGGGAGGGAGGAATCGAT
GTACGATGGGGAAAAGATGTTAAAAATTGAGTGCGAATTGAAGGGTGAGA
GAACGACGAGGATGTACCCATGTTCCTTACAAAACTCCCTTTTGGGTGTA
TTTGGTGGGAGGGGAGGAGAAGGGAGAGAGGCTTTGTGCGCGCTTGCGCT
CCCTCTCCCAACATAAGAAAAAGATTTTTTAAAAAACGAACACGAACATA
TTCGTTAAGCGCTACCAAAAGCGCTGCATGGGTGTTTGATTTTTGTACTG
CCTCATTTGCGTACTAGGGGTGAGGAGGCTGTAAAGGACAGCTAACACGC
TTCGTTACCATGTCTTTTTGCCTTGAGGATAAAATGATGACTACAGAGGC
ATCTGTCAAAGACTGAAGTAGATCACTACCTAGCATACAGAGGTGTTGTG
TGTGCCCCCTGATACGTGTGGTAGAGAACATGCTTTACATTTATTTGAGT
CAGGAGGGGCAAAAAGGCTATAGGATGCCTCCGGCCCCGAACATTTGCCT
TAGTAATAATATTAGCGACAATCAAAACACATGGTTGGAAAACTCATCAA
TTATTGTAGTATTGTAGCCTGTATAGCCCTTGTGTGTGCTGTCTTATCAC
GCAGACGCATGGTCTTTAGTTTCAAGTGACGCTTCAG back to topCoding sequence (CDS) from alignment at scaffold_4:612892..615978- >mRNA_2034 ID=mRNA_2034|Name=jgi.p|Nanoce1779_2|578811|organism=Nannochloropsis oceanica|type=CDS|length=2832bp|location=Sequence derived from alignment at scaffold_4:612892..615978- (Nannochloropsis oceanica)
TTGGACTTCAGCGGCGTGGAGGGCCTGGAAGTAGTGAACAAGAAGGGGGA
CAAGATCATGGTCACCTCCAAGGAAGCGAAAGACTTGGGCCTCTCCCGCT
TTGTCAAGATCTACTCCCCCGACGACAAGACACCTCCCTATATCAAAGAC
GTTATCTGCGCGACCCCCGTCCTGCTGAATGTCACCCGCGATACCTTCCA
TGTGAAGTGTGAATTCACGGTCCAAGATACAGGGTCGGGGGTCTCGAACG
TCCGTGCCAGTTTCGTCTCTCCCCAGGCTGATGCCCTCCTGCATATGACC
GCGGATGTGAACAAAGACATCATCTCCTCCGATCCCAAAACCGGCGAAAT
TATTCTCTCCGCTTCCGTCCCCGTCTTCCCCGGCATGCCCTCAGGGATAT
GGAAAATGGTGACCGCCATGCCTCTTGCCCCCTACGTCCAAGATCGGAAC
CGCAACGGCTTTGCCTACAAAGGTGTGGAGCCCTCCGTCCTGTGGACCCG
TCCCCAGTTCGAAGTATTTTCTGCCCCTGATACTACTCCTCCAGTGATCC
AGAAGTTTGGCTGCTCAGCAACACAAGTGATCATCCCCTTTGCGGGAGAG
GATGTCTACACGTGTCAATTGGTGGTGCAGGATGATTTATCTGGCTTCGC
GTATGGGGAGCTTGCGTTTGAAAACCCGGACCGAAACAGCACAGCCACTT
TGCGGTTTGATGCTAACACTCGTCAAGTCCAGTTTTCCCGAGGAGGCATT
TATGTGCCTACGCTCACTTTTGACCCGACGGCGCCGGGGGGCATGTGGGC
AGTTAGCAAGGCGGGCTTGATGTTGAGTGACGCTGCGGGGAACGTGATCA
ATTATAATCCTAAGGAGTTGAACGATCGGTCATACCCTACCTTTTTGTTG
GTTTCAAAGACGGACATGCCTCCTAAAGAGGAAATCAAGAGCCCGGCATC
TGCTGTTAAGGTATCATATTCCATCGTGTTGGCTTCGTTTGTTGGACTTT
TCCTCTTGCAGCGCGGATAAATGTCCATTCCGCACATCACCACGACACAG
ATTACACCTCGAGCGAGCCCGCAACAGAGGATGTGTCGCGGCGGTAGAAC
ACTCAGTCTAGCCCTCGTGGCGTTGTTGGCTGGAAGCAGCTTCGTCGCCG
CCGGACCAAAGGTTCAGTCCTTGTCCTGCTCTCCAGGCATTGGAGACGCC
CGCAATGCGGACGTGATGGTCACGTGCGCCCTGCGTGTGGTGGATAAGGA
GAGCGAAATTGACTTCGCTTACACGCGCCTCGTCTCCCCCTCGGGCAAGT
TTTCCCTGCCCTTGCTCTTTGATGGGAAGAAGTCTTTTGGAATGACATCC
TATTCGGGCGCCAATCTGGCTGCCAGCGCCATCATCCCCCGCCATGCTGA
GCCTGGAAACTGGCAGTTGGACTTCAGCGGCGTGGAGGGCCTGGAAGTAG
TGAACAAGAAGGGGGACAAGATCATGGTCACCTCCAAGGAAGCGAAAGAC
TTGGGCCTCTCCCGCTTTGTCAAGATCTACTCCCCCGACGACAAGACACC
TCCCTATATCAAAGACGTTATCTGCGCGACCCCCGTCCTGCTGAATGTCA
CCCGCGATACCTTCCATGTGAAGTGTGAATTCACGGTCCAAGATACAGGG
TCGGGGGTCTCGAACGTCCGTGCCAGTTTCGTCTCTCCCCAGGCTGATGC
CCTCCTGCATATGACCGCGGATGTGAACAAAGACATCATCTCCTCCGATC
CCAAAACCGGCGAAATTATTCTCTCCGCTTCCGTCCCCGTCTTCCCCGGC
ATGCCCTCAGGGATATGGAAAATGGTGACCGCCATGCCTCTTGCCCCCTA
CGTCCAAGATCGGAACCGCAACGGCTTTGCCTACAAAGGTGTGGAGCCCT
CCGTCCTGTGGACCCGTCCCCAGTTCGAAGTATTTTCTGCCCCTGATACT
ACTCCTCCAGTGATCCAGAAGTTTGGCTGCTCAGCAACACAAGTGATCAT
CCCCTTTGCGGGAGAGGATGTCTACACGTGTCAATTGGTGGTGCAGGATG
ATTTATCTGGCTTCGCGTATGGGGAGCTTGCGTTTGAAAACCCGGACCGA
AACAGCACAGCCACTTTGCGGTTTGATGCTAACACTCGTCAAGTCCAGTT
TTCCCGAGGAGGCATTTATGTGCCTACGCTCACTTTTGACCCGACGGCGC
CGGGGGGCATGTGGGCAGTTAGCAAGGCGGGCTTGATGTTGAGTGACGCT
GCGGGGAACGTGATCAATTATAATCCTAAGGAGTTGAACGATCGGTCATA
CCCTACCTTTTTGTTGGTTTCAAAGACGGACATGCCTCCTAAAGAGGAAA
TCAAGAGCCCGGCATCTGCTGTTAAGGTATCATATTCCATCGTGTTGGCT
TCGTTTGTTGGACTTTTCCTCTTGCAGCGCGGATAAATGTCCATTCCGCA
CATCACCACGACACAGATTACACCTCGAGCGAGCCCGCAACAGAGGATGT
GTCGCGGCGGTAGAACACTCAGTCTAGCCCTCGTGGCGTTGTTGGCTGGA
AGCAGCTTCGTCGCCGCCGGACCAAAGGTTCAGTCCTTGTCCTGCTCTCC
AGGCATTGGAGACGCCCGCAATGCGGACGTGATGGTCACGTGCGCCCTGC
GTGTGGTGGATAAGGAGAGCGAAATTGACTTCGCTTACACGCGCCTCGTC
TCCCCCTCGGGCAAGTTTTCCCTGCCCTTGCTCTTTGATGGGAAGAAGTC
TTTTGGAATGACATCCTATTCGGGCGCCAATCTGGCTGCCAGCGCCATCA
TCCCCCGCCATGCTGAGCCTGGAAACTGGCAG back to top
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