jgi.p|Nanoce1779_2|291790, mRNA_2032 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|291790
Unique NamemRNA_2032
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1724
Alignment locationscaffold_4:608148..609871 -

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Properties
Property NameValue
TranscriptId291876
TrackFilteredModels2
ProteinId291790
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:608148..609871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|291790gene_2032Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|291790mRNA_2032-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2032CDS_2032Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2032 ID=mRNA_2032|Name=jgi.p|Nanoce1779_2|291790|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp
GGGGGGGGGGGGGTATTCTCAGATGACGGCAGCGATATACTCTTCTTACT
CTTGAACCCGTACAAAAAGCCGCACATAGGCCCGTAAACAAGCTATGGAG
GTCGACAACGTCGATACAATCATAGCCAGCCCGGACAAGAAGCGAACCAA
GCTTGACACGATGGACAACGATAGCGACGACGATGATGTAAGTCCCGCCC
TCTAATTCACCGCGCATGACCACCCTGCATGCATACCTCAATTCGTTGCT
GAAAGGGTTCGTCCTGCAGGCGTATTCCCAGCCACGGCCAGCGCTGGGCT
GTGATTCTGGCGCGTTGCAGTCCTGCGTGTTGCTGCTGCTAGATTTAGTC
TCGTAATTTCACTCCGTCCTTTCATCCCCTGCTTTCATTTATTATACAGT
TCTTCGACCGCATGGTGGGTGCCGCGACGTCTGCCGACGCCGAAGAAACC
TTGGTTATGGGCTCAGAAGAGCAAAGCCCACCCCACCACGAAAATGACGG
GCGAGAGCAAGATGAGGATGCGGAATGGTGCCGTGCAATGCAGGAGCATG
CCATGGCGACTTCCGTTGTGAAAGACGAGGCGGACCCCATTTGGTTTGAG
CATATTTTACGCGGCGTGTTAGGTCACAGCGGCGGAACAGATATTGCAGC
ATACGCACTCGACACAGACGTAAAAATAATAATCCTCACCCGCTTCCTGG
GCGCCCGACGGGGGGGAGGAGAAGCGTCTTTGCTTAGCAAGTCGTTACTC
TGGGACGCGGTGGAACAAGCCACGCTTACCACCGCCAGTAGCAAACTCAA
CAGCAGCAGCTACAGCAGTAGCAGCAATAGCAGCAGCAGTGGTTCCTCTT
CCACCTTCTTCCTCGACAACCTCTTCACCCCACAAGTGGCCTTAGCTGTT
CGTCAGGATTCTTCTGCCGGCCTCCCACCCTCCACCTTCCAAGTCCTCTT
CCATGCCCTTAACACAAGCGCCGTCCTGGCCGTGCTTGCTTGTCTAGGAT
TCGGTGTTCCTGCTTCGCCTATCTCCGCCTGGCATCTGCAGCACGTGGAC
CCGCTACACGAATCCGGCCTCTTGTCACACATCGCGGAGAGCCCAATTCT
GACACTGACGCACCGGGAGAGCGAGTACCTGTATGCCCTCCCTCCCTCCC
TTCCTTCCTCCTCTTTCTGCCTAGCATCACCACTACCACCCTTCCCGCCA
GCGCCGTTCCTCATTCGAGCCTTCCCCCCGCAATTGTATGAACACAAAGG
TACTTTGAAGGATGGGTATGAATTGACGTGTAACGATATTTCATTGTGTG
CAGTGTATAGAAGAGAGGAGGAAGGAGGGGCCTGGAGGCTGCAAACAACA
GCAACATTCAGAGGGAGGGGGTATGAAGGGGAGTTACTGAAGTACGTTTT
GAATGATAGGCGGGCGAAGGGAGGGAGAGAAAAAGAGGAGGTCATGAAGG
TGTGGGTAAGGTATGACGACGATGGGGAAGAGGGGAAGGAGGTCGGGGCC
GTTGGAGGGCTGGTAGGCGAGAAGGGGATCTTGGAGGGCATGGGATCAAG
GTGTTTGGGAGTGGGGGTGGATTTATGGGTGGCGCACCAGTCGCAATAGT
AGCAACAACAGTAACAGCGGCAGCGAGAGCAGAAGCAGGAGCAGGGGCAG
GAGCAGGAGCAGTAGAAGAAGTACTGATGAGATAATTTTGATTTACAAAG
TGAAAGGAAAGGGCATAAGGGGAT
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protein sequence of jgi.p|Nanoce1779_2|291790

>mRNA_2032-protein ID=mRNA_2032-protein|Name=jgi.p|Nanoce1779_2|291790|organism=Nannochloropsis oceanica|type=polypeptide|length=396bp
MVGAATSADAEETLVMGSEEQSPPHHENDGREQDEDAEWCRAMQEHAMAT
SVVKDEADPIWFEHILRGVLGHSGGTDIAAYALDTDVKIIILTRFLGARR
GGGEASLLSKSLLWDAVEQATLTTASSKLNSSSYSSSSNSSSSGSSSTFF
LDNLFTPQVALAVRQDSSAGLPPSTFQVLFHALNTSAVLAVLACLGFGVP
ASPISAWHLQHVDPLHESGLLSHIAESPILTLTHRESEYLYALPPSLPSS
SFCLASPLPPFPPAPFLIRAFPPQLYEHKGTLKDGYELTCNDISLCAVYR
REEEGGAWRLQTTATFRGRGYEGELLKYVLNDRRAKGGREKEEVMKVWVR
YDDDGEEGKEVGAVGGLVGEKGILEGMGSRCLGVGVDLWVAHQSQ*
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mRNA from alignment at scaffold_4:608148..609871-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2032 ID=mRNA_2032|Name=jgi.p|Nanoce1779_2|291790|organism=Nannochloropsis oceanica|type=mRNA|length=1724bp|location=Sequence derived from alignment at scaffold_4:608148..609871- (Nannochloropsis oceanica)
GGGGGGGGGGGGGTATTCTCAGATGACGGCAGCGATATACTCTTCTTACT
CTTGAACCCGTACAAAAAGCCGCACATAGGCCCGTAAACAAGCTATGGAG
GTCGACAACGTCGATACAATCATAGCCAGCCCGGACAAGAAGCGAACCAA
GCTTGACACGATGGACAACGATAGCGACGACGATGATGTAAGTCCCGCCC
TCTAATTCACCGCGCATGACCACCCTGCATGCATACCTCAATTCGTTGCT
GAAAGGGTTCGTCCTGCAGGCGTATTCCCAGCCACGGCCAGCGCTGGGCT
GTGATTCTGGCGCGTTGCAGTCCTGCGTGTTGCTGCTGCTAGATTTAGTC
TCGTAATTTCACTCCGTCCTTTCATCCCCTGCTTTCATTTATTATACAGT
TCTTCGACCGCATGGTGGGTGCCGCGACGTCTGCCGACGCCGAAGAAACC
TTGGTTATGGGCTCAGAAGAGCAAAGCCCACCCCACCACGAAAATGACGG
GCGAGAGCAAGATGAGGATGCGGAATGGTGCCGTGCAATGCAGGAGCATG
CCATGGCGACTTCCGTTGTGAAAGACGAGGCGGACCCCATTTGGTTTGAG
CATATTTTACGCGGCGTGTTAGGTCACAGCGGCGGAACAGATATTGCAGC
ATACGCACTCGACACAGACGTAAAAATAATAATCCTCACCCGCTTCCTGG
GCGCCCGACGGGGGGGAGGAGAAGCGTCTTTGCTTAGCAAGTCGTTACTC
TGGGACGCGGTGGAACAAGCCACGCTTACCACCGCCAGTAGCAAACTCAA
CAGCAGCAGCTACAGCAGTAGCAGCAATAGCAGCAGCAGTGGTTCCTCTT
CCACCTTCTTCCTCGACAACCTCTTCACCCCACAAGTGGCCTTAGCTGTT
CGTCAGGATTCTTCTGCCGGCCTCCCACCCTCCACCTTCCAAGTCCTCTT
CCATGCCCTTAACACAAGCGCCGTCCTGGCCGTGCTTGCTTGTCTAGGAT
TCGGTGTTCCTGCTTCGCCTATCTCCGCCTGGCATCTGCAGCACGTGGAC
CCGCTACACGAATCCGGCCTCTTGTCACACATCGCGGAGAGCCCAATTCT
GACACTGACGCACCGGGAGAGCGAGTACCTGTATGCCCTCCCTCCCTCCC
TTCCTTCCTCCTCTTTCTGCCTAGCATCACCACTACCACCCTTCCCGCCA
GCGCCGTTCCTCATTCGAGCCTTCCCCCCGCAATTGTATGAACACAAAGG
TACTTTGAAGGATGGGTATGAATTGACGTGTAACGATATTTCATTGTGTG
CAGTGTATAGAAGAGAGGAGGAAGGAGGGGCCTGGAGGCTGCAAACAACA
GCAACATTCAGAGGGAGGGGGTATGAAGGGGAGTTACTGAAGTACGTTTT
GAATGATAGGCGGGCGAAGGGAGGGAGAGAAAAAGAGGAGGTCATGAAGG
TGTGGGTAAGGTATGACGACGATGGGGAAGAGGGGAAGGAGGTCGGGGCC
GTTGGAGGGCTGGTAGGCGAGAAGGGGATCTTGGAGGGCATGGGATCAAG
GTGTTTGGGAGTGGGGGTGGATTTATGGGTGGCGCACCAGTCGCAATAGT
AGCAACAACAGTAACAGCGGCAGCGAGAGCAGAAGCAGGAGCAGGGGCAG
GAGCAGGAGCAGTAGAAGAAGTACTGATGAGATAATTTTGATTTACAAAG
TGAAAGGAAAGGGCATAAGGGGAT
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Coding sequence (CDS) from alignment at scaffold_4:608148..609871-

>mRNA_2032 ID=mRNA_2032|Name=jgi.p|Nanoce1779_2|291790|organism=Nannochloropsis oceanica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_4:608148..609871- (Nannochloropsis oceanica)
ATGGTGGGTGCCGCGACGTCTGCCGACGCCGAAGAAACCTTGGTTATGGG
CTCAGAAGAGCAAAGCCCACCCCACCACGAAAATGACGGGCGAGAGCAAG
ATGAGGATGCGGAATGGTGCCGTGCAATGCAGGAGCATGCCATGGCGACT
TCCGTTGTGAAAGACGAGGCGGACCCCATTTGGTTTGAGCATATTTTACG
CGGCGTGTTAGGTCACAGCGGCGGAACAGATATTGCAGCATACGCACTCG
ACACAGACGTAAAAATAATAATCCTCACCCGCTTCCTGGGCGCCCGACGG
GGGGGAGGAGAAGCGTCTTTGCTTAGCAAGTCGTTACTCTGGGACGCGGT
GGAACAAGCCACGCTTACCACCGCCAGTAGCAAACTCAACAGCAGCAGCT
ACAGCAGTAGCAGCAATAGCAGCAGCAGTGGTTCCTCTTCCACCTTCTTC
CTCGACAACCTCTTCACCCCACAAGTGGCCTTAGCTGTTCGTCAGGATTC
TTCTGCCGGCCTCCCACCCTCCACCTTCCAAGTCCTCTTCCATGCCCTTA
ACACAAGCGCCGTCCTGGCCGTGCTTGCTTGTCTAGGATTCGGTGTTCCT
GCTTCGCCTATCTCCGCCTGGCATCTGCAGCACGTGGACCCGCTACACGA
ATCCGGCCTCTTGTCACACATCGCGGAGAGCCCAATTCTGACACTGACGC
ACCGGGAGAGCGAGTACCTGTATGCCCTCCCTCCCTCCCTTCCTTCCTCC
TCTTTCTGCCTAGCATCACCACTACCACCCTTCCCGCCAGCGCCGTTCCT
CATTCGAGCCTTCCCCCCGCAATTGTATGAACACAAAGGTACTTTGAAGG
ATGGGTATGAATTGACGTGTAACGATATTTCATTGTGTGCAGTGTATAGA
AGAGAGGAGGAAGGAGGGGCCTGGAGGCTGCAAACAACAGCAACATTCAG
AGGGAGGGGGTATGAAGGGGAGTTACTGAAGTACGTTTTGAATGATAGGC
GGGCGAAGGGAGGGAGAGAAAAAGAGGAGGTCATGAAGGTGTGGGTAAGG
TATGACGACGATGGGGAAGAGGGGAAGGAGGTCGGGGCCGTTGGAGGGCT
GGTAGGCGAGAAGGGGATCTTGGAGGGCATGGGATCAAGGTGTTTGGGAG
TGGGGGTGGATTTATGGGTGGCGCACCAGTCGCAATAG
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Synonyms
Publications