jgi.p|Nanoce1779_2|668760, mRNA_2031 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668760
Unique Name	mRNA_2031
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1300
Alignment location	scaffold_4:605555..607788 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	668846
Track	FilteredModels2
ProteinId	668760

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:605555..607788 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668760	gene_2031	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668760	mRNA_2031-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2031	CDS_2031	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:605555..607788+
coding sequence from alignment at scaffold_4:605555..607788+

mRNA sequence

>mRNA_2031 ID=mRNA_2031|Name=jgi.p|Nanoce1779_2|668760|organism=Nannochloropsis oceanica|type=mRNA|length=1300bp
AGCCAGAAAACACCAAACCGATTCTAGTACCATCAACAACAGAGATGCCG
TTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGCTACGGCCAA
GGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGACCGTCGATC
CGGCCCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTGGACGAGTTA
AAGGCTTTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAAGGACCT
GCGAGAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTGTACCACGAAG
GCAAATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGGTCAAGCCAAG
CTCGCTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGGAGTGCTTGGA
ACGGGTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGCTTCAGAACA
AGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGACAAACCCGAC
CTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGCTGAAATTGA
TAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCCAAAGAGCAG
GGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTCTTGGCAACGGCC
TTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGTTCAAGACGGACTT
TTACAAGGTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCGAGTCCA
TCAAAATGCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCCGAGAAG
GACTTGATTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGAATGGAA
GGAGGGCAAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGCAGGCGG
TGGTGAGTAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAGGTGCAG
AATAAAATGTGAGGTGGCTGTGATGGAGGGAGGGGGGAAGAAGAGGGGGG
AGAGGGAGATGTAGTGTGTATTGATGGAGCTTATGGAGGGAGCGAGAGAG
ACAGAGAGAGACAGAACGGGTTAGAGAGAGAGAAATGTACAGGGAGGAGA
GAGAGTGAGTGTGAATTTGTATTTGGTTGTGTGGAAGCGAAATTCCAAAA
GACGTGATGACTCTCTTTCTGCCTTCGTATGTTTCCTTCGCGGACTCGTT
ATTGCGGCGTTTTTGGTGCTGGTGCTGTCTGGAGAGAGAGAGAGAAGATA
GGGCACCCATATTTCGAAGGAATCCAAGATAAACTAATATGCATTTGGGG

protein sequence of jgi.p|Nanoce1779_2|668760

>mRNA_2031-protein ID=mRNA_2031-protein|Name=jgi.p|Nanoce1779_2|668760|organism=Nannochloropsis oceanica|type=polypeptide|length=306bp
MPFIDTLRHALEQLRATAKASIPSHKVGEEEMTVDPALKGVERELQIALD
ELKAFKNEDINKPLHAKDLREPREILGHVDSLYHEGKFCVEGVEGIPHGQ
AKLASMLAEGHELLRECLERVDFYKVSEPLRPLQNKLDNVQHALNTLKDK
PDLHPHDLLPLRRKLAEIDNLYHEAKFVESSPQRAGSAGGNIPEGQAVLA
TALANAHETLRALLFKTDFYKVDEALFSIHDRIESIKMRLESLNRKENVA
EKDLISLRDRLQRCDEEWKEGKIVVEGGRVPGGQAVVSKLLYEAHNLMSE
VQNKM*

mRNA from alignment at scaffold_4:605555..607788+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2031 ID=mRNA_2031|Name=jgi.p|Nanoce1779_2|668760|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp|location=Sequence derived from alignment at scaffold_4:605555..607788+ (Nannochloropsis oceanica)
AGCCAGAAAACACCAAACCGATTCTAGTACCATCAACAACAGAGATGCCG
TTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGCTACGGCCAA
GGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGACCGTCGATC
CGGCCCTGAAAGGCGTAGAGCGTGAGGTGAGAGAGGAGCTAGGAGGGCCG
GTCGGGATGAAGTCATGTGTGGGGAGCGTTGCGTGTCCAAGTGTGCGGGA
GAGGGAGGTTGATAGATTTACAGGTGTCTCTTTGTGCGCCGAGGTTTTAA
TGTCTATGGAGGTGTATTCTAATTTCAGCGCACATCATTTCTCACAATCT
GTATCCCTACCTTCTTCACTCTCTCCCTGTTTCTCTCTATCCCTCTCCCT
ACCTACCACAGCTCCAGATCGCCTTGGACGAGTTAAAGGCTTTTAAGAAC
GAGGACATAAACAAGCCGCTGCACGCCAAGGACCTGCGAGAGCCACGAGA
GATTCTGGGGCATGTGGTGCGTTGTTTGCTTAAGTCTCTTTCTTCGGCCC
TCTCGTCACCACTTGTCCCTCTACAAATCCCTCAAATCCCCCTTCTCAAT
CATCATGCTCTCCCTTCTCTCCTTCCCCTCCTGTCATACCAAAATGCAGG
ACTCCCTGTACCACGAAGGCAAATTCTGTGTCGAAGGCGTGGAGGGGATT
CCCCACGGTCAAGCCAAGCTCGCTTCCATGCTCGCAGAGGGCCATGAGCT
TTTGCGGGAGTGCTTGGAACGGGTGGATTTCTACAAGGTACGACTTTGTT
ACTGCTTTCCTCCGCTTCCCTTTCTCCCTCCCTCCTTCCGTCGCTCCTTT
CCTTTCTGTATTCCTCCCTTCCTCCCATGATCAAGTAAATCCTCTTCCTT
CCTTCCTCCCCTCCTCCTCTCCCAAGGTCTCCGAGCCCCTCCGTCCGCTT
CAGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGACAA
ACCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGCTG
AAATTGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCCAA
AGAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTGAGCTT
GGATGGAAAAAATGGGGCTTACGGAGGGAGGAGAGAAGCGGAGGGGGAGA
AGGGGGAAACAGTCGGGAATTCCGCTTTATCTCCTTTGTTTGGATTGGCT
GAGCTTTGCATTTTCTGACTGACCATTGCCCTTTCCCTTCTTGCGGCTCT
CTTCTTTTCTCGACTTTTCCCTCCACCAAACCACCATAGGTCTTGGCAAC
GGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGTTCAAGACGG
ACTTTTACAAGGTAAGAACATATAAGAACATTTGCCCGTTGGCCGAGCTC
CCGCCGATTGCCTCCTCCTCAGATGCATGGAGAGGTGTCAAGATGTGTGT
CCCGAAAGACAAGCTCACACATCCTCTCCCCCCCATTCCGCATATCCATG
GTCATTTCTGCGTCTGATTTCTACCGCTTTCAGTGATTTTCATCTCCCTT
CCCCCACCCCCATCCCCGCCCCTTCTCCCCTTTCTCCCTAGGTGGATGAA
GCTCTGTTCTCCATCCATGACCGTATCGAGTCCATCAAAATGCGCCTCGA
GAGCCTGAATCGCAAAGAAAATGTCGCCGAGAAGGACTTGATTTCCCTGC
GAGACCGGCTGCAGCGCTGTGACGAGGAATGGAAGGAGGGCAAGATCGTG
GTGGAGGGAGGGAGGGTGCCGGGAGGGCAGGCGGTGGTGAGTAAGCTTTT
GTATGAGGCGCATAATTTGATGAGCGAGGTGCAGAATAAAATGTGAGGTG
GCTGTGATGGAGGGAGGGGGGAAGAAGAGGGGGGAGAGGGAGATGTAGTG
TGTATTGATGGAGCTTATGGAGGGAGCGAGAGAGACAGAGAGAGACAGAA
CGGGTTAGAGAGAGAGAAATGTACAGGGAGGAGAGAGAGTGAGTGTGAAT
TTGTATTTGGTTGTGTGGAAGCGAAATTCCAAAAGACGTGATGACTCTCT
TTCTGCCTTCGTATGTTTCCTTCGCGGACTCGTTATTGCGGCGTTTTTGG
TGCTGGTGCTGTCTGGAGAGAGAGAGAGAAGATAGGGCACCCATATTTCG
AAGGAATCCAAGATAAACTAATATGCATTTGGGG

Coding sequence (CDS) from alignment at scaffold_4:605555..607788+

>mRNA_2031 ID=mRNA_2031|Name=jgi.p|Nanoce1779_2|668760|organism=Nannochloropsis oceanica|type=CDS|length=5508bp|location=Sequence derived from alignment at scaffold_4:605555..607788+ (Nannochloropsis oceanica)
ATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGCTAC
GGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGACCG
TCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTGGAC
GAGTTAAAGGCTTTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAA
GGACCTGCGAGAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTGTACC
ACGAAGGCAAATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGGTCAA
GCCAAGCTCGCTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGGAGTG
CTTGGAACGGGTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGCTTC
AGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGACAAA
CCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGCTGA
AATTGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCCAAA
GAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTCTTGGCA
ACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGTTCAAGAC
GGACTTTTACAAGGTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCG
AGTCCATCAAAATGCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCC
GAGAAGGACTTGATTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGA
ATGGAAGGAGGGCAAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGC
AGGCGGTGGTGAGTAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAG
GTGCAGAATAAAATGTGAATGCCGTTCATCGACACCCTCCGCCATGCCCT
CGAGCAGCTACGCGCTACGGCCAAGGCCTCTATTCCGTCCCACAAGGTCG
GCGAGGAGGAGATGACCGTCGATCCGGCCCTGAAAGGCGTAGAGCGTGAG
CTCCAGATCGCCTTGGACGAGTTAAAGGCTTTTAAGAACGAGGACATAAA
CAAGCCGCTGCACGCCAAGGACCTGCGAGAGCCACGAGAGATTCTGGGGC
ATGTGGACTCCCTGTACCACGAAGGCAAATTCTGTGTCGAAGGCGTGGAG
GGGATTCCCCACGGTCAAGCCAAGCTCGCTTCCATGCTCGCAGAGGGCCA
TGAGCTTTTGCGGGAGTGCTTGGAACGGGTGGATTTCTACAAGGTCTCCG
AGCCCCTCCGTCCGCTTCAGAACAAGCTGGACAACGTGCAGCACGCCCTG
AACACGCTCAAAGACAAACCCGACCTCCACCCCCATGACCTGCTCCCTCT
CCGTCGAAAGCTGGCTGAAATTGATAATCTTTACCATGAGGCGAAGTTTG
TGGAGTCGAGTCCCCAAAGAGCAGGGTCTGCGGGAGGGAATATCCCGGAG
GGCCAGGCGGTCTTGGCAACGGCCTTGGCCAATGCGCATGAGACGCTGCG
GGCACTATTGTTCAAGACGGACTTTTACAAGGTGGATGAAGCTCTGTTCT
CCATCCATGACCGTATCGAGTCCATCAAAATGCGCCTCGAGAGCCTGAAT
CGCAAAGAAAATGTCGCCGAGAAGGACTTGATTTCCCTGCGAGACCGGCT
GCAGCGCTGTGACGAGGAATGGAAGGAGGGCAAGATCGTGGTGGAGGGAG
GGAGGGTGCCGGGAGGGCAGGCGGTGGTGAGTAAGCTTTTGTATGAGGCG
CATAATTTGATGAGCGAGGTGCAGAATAAAATGTGAATGCCGTTCATCGA
CACCCTCCGCCATGCCCTCGAGCAGCTACGCGCTACGGCCAAGGCCTCTA
TTCCGTCCCACAAGGTCGGCGAGGAGGAGATGACCGTCGATCCGGCCCTG
AAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTGGACGAGTTAAAGGCTTT
TAAGAACGAGGACATAAACAAGCCGCTGCACGCCAAGGACCTGCGAGAGC
CACGAGAGATTCTGGGGCATGTGGACTCCCTGTACCACGAAGGCAAATTC
TGTGTCGAAGGCGTGGAGGGGATTCCCCACGGTCAAGCCAAGCTCGCTTC
CATGCTCGCAGAGGGCCATGAGCTTTTGCGGGAGTGCTTGGAACGGGTGG
ATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGCTTCAGAACAAGCTGGAC
AACGTGCAGCACGCCCTGAACACGCTCAAAGACAAACCCGACCTCCACCC
CCATGACCTGCTCCCTCTCCGTCGAAAGCTGGCTGAAATTGATAATCTTT
ACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCCAAAGAGCAGGGTCTGCG
GGAGGGAATATCCCGGAGGGCCAGGCGGTCTTGGCAACGGCCTTGGCCAA
TGCGCATGAGACGCTGCGGGCACTATTGTTCAAGACGGACTTTTACAAGG
TGGATGAAGCTCTGTTCTCCATCCATGACCGTATCGAGTCCATCAAAATG
CGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCCGAGAAGGACTTGAT
TTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGAATGGAAGGAGGGCA
AGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGCAGGCGGTGGTGAGT
AAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAGGTGCAGAATAAAAT
GTGAATGCCGTTCATCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCG
CTACGGCCAAGGCCTCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATG
ACCGTCGATCCGGCCCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTT
GGACGAGTTAAAGGCTTTTAAGAACGAGGACATAAACAAGCCGCTGCACG
CCAAGGACCTGCGAGAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTG
TACCACGAAGGCAAATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGG
TCAAGCCAAGCTCGCTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGG
AGTGCTTGGAACGGGTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCG
CTTCAGAACAAGCTGGACAACGTGCAGCACGCCCTGAACACGCTCAAAGA
CAAACCCGACCTCCACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGG
CTGAAATTGATAATCTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCC
CAAAGAGCAGGGTCTGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTCTT
GGCAACGGCCTTGGCCAATGCGCATGAGACGCTGCGGGCACTATTGTTCA
AGACGGACTTTTACAAGGTGGATGAAGCTCTGTTCTCCATCCATGACCGT
ATCGAGTCCATCAAAATGCGCCTCGAGAGCCTGAATCGCAAAGAAAATGT
CGCCGAGAAGGACTTGATTTCCCTGCGAGACCGGCTGCAGCGCTGTGACG
AGGAATGGAAGGAGGGCAAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGA
GGGCAGGCGGTGGTGAGTAAGCTTTTGTATGAGGCGCATAATTTGATGAG
CGAGGTGCAGAATAAAATGTGAATGCCGTTCATCGACACCCTCCGCCATG
CCCTCGAGCAGCTACGCGCTACGGCCAAGGCCTCTATTCCGTCCCACAAG
GTCGGCGAGGAGGAGATGACCGTCGATCCGGCCCTGAAAGGCGTAGAGCG
TGAGCTCCAGATCGCCTTGGACGAGTTAAAGGCTTTTAAGAACGAGGACA
TAAACAAGCCGCTGCACGCCAAGGACCTGCGAGAGCCACGAGAGATTCTG
GGGCATGTGGACTCCCTGTACCACGAAGGCAAATTCTGTGTCGAAGGCGT
GGAGGGGATTCCCCACGGTCAAGCCAAGCTCGCTTCCATGCTCGCAGAGG
GCCATGAGCTTTTGCGGGAGTGCTTGGAACGGGTGGATTTCTACAAGGTC
TCCGAGCCCCTCCGTCCGCTTCAGAACAAGCTGGACAACGTGCAGCACGC
CCTGAACACGCTCAAAGACAAACCCGACCTCCACCCCCATGACCTGCTCC
CTCTCCGTCGAAAGCTGGCTGAAATTGATAATCTTTACCATGAGGCGAAG
TTTGTGGAGTCGAGTCCCCAAAGAGCAGGGTCTGCGGGAGGGAATATCCC
GGAGGGCCAGGCGGTCTTGGCAACGGCCTTGGCCAATGCGCATGAGACGC
TGCGGGCACTATTGTTCAAGACGGACTTTTACAAGGTGGATGAAGCTCTG
TTCTCCATCCATGACCGTATCGAGTCCATCAAAATGCGCCTCGAGAGCCT
GAATCGCAAAGAAAATGTCGCCGAGAAGGACTTGATTTCCCTGCGAGACC
GGCTGCAGCGCTGTGACGAGGAATGGAAGGAGGGCAAGATCGTGGTGGAG
GGAGGGAGGGTGCCGGGAGGGCAGGCGGTGGTGAGTAAGCTTTTGTATGA
GGCGCATAATTTGATGAGCGAGGTGCAGAATAAAATGTGAATGCCGTTCA
TCGACACCCTCCGCCATGCCCTCGAGCAGCTACGCGCTACGGCCAAGGCC
TCTATTCCGTCCCACAAGGTCGGCGAGGAGGAGATGACCGTCGATCCGGC
CCTGAAAGGCGTAGAGCGTGAGCTCCAGATCGCCTTGGACGAGTTAAAGG
CTTTTAAGAACGAGGACATAAACAAGCCGCTGCACGCCAAGGACCTGCGA
GAGCCACGAGAGATTCTGGGGCATGTGGACTCCCTGTACCACGAAGGCAA
ATTCTGTGTCGAAGGCGTGGAGGGGATTCCCCACGGTCAAGCCAAGCTCG
CTTCCATGCTCGCAGAGGGCCATGAGCTTTTGCGGGAGTGCTTGGAACGG
GTGGATTTCTACAAGGTCTCCGAGCCCCTCCGTCCGCTTCAGAACAAGCT
GGACAACGTGCAGCACGCCCTGAACACGCTCAAAGACAAACCCGACCTCC
ACCCCCATGACCTGCTCCCTCTCCGTCGAAAGCTGGCTGAAATTGATAAT
CTTTACCATGAGGCGAAGTTTGTGGAGTCGAGTCCCCAAAGAGCAGGGTC
TGCGGGAGGGAATATCCCGGAGGGCCAGGCGGTCTTGGCAACGGCCTTGG
CCAATGCGCATGAGACGCTGCGGGCACTATTGTTCAAGACGGACTTTTAC
AAGGTGGATGAAGCTCTGTTCTCCATCCATGACCGTATCGAGTCCATCAA
AATGCGCCTCGAGAGCCTGAATCGCAAAGAAAATGTCGCCGAGAAGGACT
TGATTTCCCTGCGAGACCGGCTGCAGCGCTGTGACGAGGAATGGAAGGAG
GGCAAGATCGTGGTGGAGGGAGGGAGGGTGCCGGGAGGGCAGGCGGTGGT
GAGTAAGCTTTTGTATGAGGCGCATAATTTGATGAGCGAGGTGCAGAATA
AAATGTGA

Synonyms

Publications