jgi.p|Nanoce1779_2|291741, mRNA_2030 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|291741
Unique Name	mRNA_2030
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2490
Alignment location	scaffold_4:602639..605246 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	291827
Track	FilteredModels2
ProteinId	291741

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:602639..605246 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|291741	gene_2030	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|291741	mRNA_2030-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2030	CDS_2030	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:602639..605246-
coding sequence from alignment at scaffold_4:602639..605246-

mRNA sequence

>mRNA_2030 ID=mRNA_2030|Name=jgi.p|Nanoce1779_2|291741|organism=Nannochloropsis oceanica|type=mRNA|length=2490bp
GGCGGAGGACGGCTTACAGATAATTTTCTTTCTTCTATCCTTACTTATTT
AGTACATTCCCAAGCACTCTATAAGACTCTGCGCAACCATCGCACACATT
GTTATCGATCTCAAGCAACGTCACGCGATCCACATTCCCAGACACGCCCT
CTGCCAGTTCTCGAAATTCGCCAAATCTCAATCCGCGGACACATGCCCCC
CTTCATGCCCGCGCTGCCCCACATCGATGCCCTCCTTGCCCGCGAGGATG
ACAGCAAGACCCCCTATGTCTCCAAGTACGAAGCCCGCCGTCTTCTACAG
GCATGTCAGGCCGAAAAAGGGACAGAGCTTGAGCCCGTGCTGGGCGCTCG
CATCGCTTACCGGCTCGGCAAAATAGGAGAAGCACTGTTCATCCCCACTG
CCGTCATTCATTCAGTTCCTCTCCTCCTTCCCCCCGCCCACAGCCCTAGA
CGTGGAAGAACCGCAGCAAGAAGCGGAGGCACATCTTAACAAGGCCTGCA
ACATATTCTTTCCCGACTTGTGTTCTTGGATTGGAAGCACACAAGCACAA
GCAGCAGCCGACCAGGAAATGCAGCAGCAGCAGCAGGAGAAGCAGCATCC
GCAGGGGCTAAAGGATGATGAGGAGCCTGTTCCCCCTCTAGCAATTGGCA
ATGTGCTCAAGAAGGCTCTAAACGCACCTGATCCATCAACCGGAGCAGCA
GCAGCAGCAGTAGCGGAGGAAGCAGTCGAGACGTTGAATCTGTTGGCATT
GCTGATGAGTGGAAGGGAGGAAATAGCCCAGGCTCGATTATATTTGCTGG
CAGCGAAAGAGGCGTACAGAGTGCTAGAACCCTTTTGTCCTGCCCCACCC
TCTCCTAGTACACCTACTGCTGTGGCTGCTGCTATTGGTGACAAGAAAGA
GAAAGAAAACACCGAGAAGGAAGAAGAAATCGCTAACAGCACGGCAGCGG
GCGAAAGCGCCCGCAGTAACTCGATCCCCAACCCCAACTCAAGATTTCGT
CGCCTTATCGACGACCATCACACGCACTCCCTTTATTATCTTGCCCAGAT
CTACGGCCAGCTCAAGCAGGCCGATGCCTCGGCCTGGTATTGCTATCAAA
CGTTGGCAAAGCAGGTGGAGTGGGAAGAGGGAAGGTTGGACGTATGGGGA
TGGGTGAGCAATTGCATGAGTCTGATTGATTACTTGGTGGGGGTAAGGGG
GGACAGAGAGGCCGCGGCACGGTGCTTGCATGCGTGTAGTGTGCTGTTGA
CGAGGGACAAGGAGGGGGAGGAGGGTTGGGCGGGGCAGGAGAAGAGTATG
TTCATAAGGGCTGATATACATAGGAGGTGGGCGGCTTTGTATTGTTCGAC
TTTGCAGGAAGCGGCGGAGAGGGTTGAAGAAGAGGAGACGGGGGCGGCTA
GAATGGAGAGAAGAGAGGAGAGTGCAATATCAGTGGCATTTGTCGTGCAT
TTTCCCACCCTAGAGACTGCCCTCGCTGGTGGTAATAGTGCTGCTCCTCC
GGCTTCTCTCCCCCAGCCAAAGGCCATCAATACGTTTGCGGAGGCTCGAT
TCGTGTTTTTGCTGGCACAGAAGCACTTGGATGCCGCCCTTGAATTCTTT
AAGTTGGACGGACATGTGACCGACCACGTTCATCTTATGAGAGCCGTGAG
TCGACTATACCGTGACTTATCTTTGTTTGAGACGGACGAGAAACGCCGCC
AGGCCATGTTCTTACGGAGGGCCAACGCTCTGCAGCCGCTGGTAGACCAA
TTGAATCCCCGCGCTTATGTGGGTTTGTCAAAGATGTTGTTGTTTGAATT
GGGGGAAGTTTATTTGACATTGTTGGAGGTGAAGAGTGCTAGGATCGAGC
AAAAATTGAAGGGAGGTCGAGGGAGGGAGAGAGGAAAAGGAGGCGCTTGT
ATGCCAAGTAAGGCGGACGGTGAGAAATGCGACGAGTACTGTCGGTTGGC
TATTGGAGCGTTTGAAGGCTTTGTGGCTTTGTATCAAAAAGACCCCGAGG
GAGGGAGGGAGGGAGGGAAGGCGGTAGTGTGGGATTTGCCTAGCAAGGAT
GATTTTAAACCTGTTTTCCGCGCGTTGTTTCACTTGGCAAGGTTATACGG
ACAAATGAGTGTGTATGGAGGTCCAGGAGAAGGCGCTCACAAGGAGAGGA
TCGATGGGAATAAAAAAAGTTTAGAGGCTTACGAATGGATCCGAGAATTC
GCGGCCGAGCAGATGGAGAGGTTGTGGGGTCGGGACGAGGAAGGGATAGA
GGAAGGGAAGGAGATGTATGCGGAGGAGTTGGGTGTATGTAATGAGATGG
TTCGGATGTTGCCGGAGAAGATTGCAAGGATGCATTATCAGAAGGTGGCC
TTTTAGTTTTAAGATAGTGAGGGTGGATGAGGATTTAGCGTTAGTCCCTG
AGATAAGGGAAAAACTAAAGGTACAGCAGAAATAGAATTTCATCAACCCC
CCTCTTCAAGCACAAAAAGAAGAATGCATGCTAGTTTACA

protein sequence of jgi.p|Nanoce1779_2|291741

>mRNA_2030-protein ID=mRNA_2030-protein|Name=jgi.p|Nanoce1779_2|291741|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp
MQQQQQEKQHPQGLKDDEEPVPPLAIGNVLKKALNAPDPSTGAAAAAVAE
EAVETLNLLALLMSGREEIAQARLYLLAAKEAYRVLEPFCPAPPSPSTPT
AVAAAIGDKKEKENTEKEEEIANSTAAGESARSNSIPNPNSRFRRLIDDH
HTHSLYYLAQIYGQLKQADASAWYCYQTLAKQVEWEEGRLDVWGWVSNCM
SLIDYLVGVRGDREAAARCLHACSVLLTRDKEGEEGWAGQEKSMFIRADI
HRRWAALYCSTLQEAAERVEEEETGAARMERREESAISVAFVVHFPTLET
ALAGGNSAAPPASLPQPKAINTFAEARFVFLLAQKHLDAALEFFKLDGHV
TDHVHLMRAVSRLYRDLSLFETDEKRRQAMFLRRANALQPLVDQLNPRAY
VGLSKMLLFELGEVYLTLLEVKSARIEQKLKGGRGRERGKGGACMPSKAD
GEKCDEYCRLAIGAFEGFVALYQKDPEGGREGGKAVVWDLPSKDDFKPVF
RALFHLARLYGQMSVYGGPGEGAHKERIDGNKKSLEAYEWIREFAAEQME
RLWGRDEEGIEEGKEMYAEELGVCNEMVRMLPEKIARMHYQKVAF*

mRNA from alignment at scaffold_4:602639..605246-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2030 ID=mRNA_2030|Name=jgi.p|Nanoce1779_2|291741|organism=Nannochloropsis oceanica|type=mRNA|length=2608bp|location=Sequence derived from alignment at scaffold_4:602639..605246- (Nannochloropsis oceanica)
GGCGGAGGACGGCTTACAGATAATTTTCTTTCTTCTATCCTTACTTATTT
AGTACATTCCCAAGCACTCTATAAGACTCTGCGCAACCATCGCACACATT
GTTATCGATCTCAAGCAACGTCACGCGATCCACATTCCCAGACACGCCCT
CTGCCAGTTCTCGAAATTCGCCAAATCTCAATCCGCGGACACATGCCCCC
CTTCATGCCCGCGCTGCCCCACATCGATGCCCTCCTTGCCCGCGAGGATG
ACAGCAAGACCCCCTATGTCTCCAAGTACGAAGCCCGCCGTCTTCTACAG
GCATGTCAGGCCGAAAAAGGGACAGAGCTTGAGCCCGTGCTGGGCGCTCG
CATCGCTTACCGGCTCGGCAAAATAGGTACGAGAGTTGCTGGGTTGGGCC
TCGGGGATTGAGTGAGGCGTGGCCTTGGAGGATAGGTTGTATGCTTGACC
GAGCCTTACATTCTACTGCTGCTGCTGGCGCTAGTCTCAAACAGGAGAAG
CACTGTTCATCCCCACTGCCGTCATTCATTCAGTTCCTCTCCTCCTTCCC
CCCGCCCACAGCCCTAGACGTGGAAGAACCGCAGCAAGAAGCGGAGGCAC
ATCTTAACAAGGCCTGCAACATATTCTTTCCCGACTTGTGTTCTTGGATT
GGAAGCACACAAGCACAAGCAGCAGCCGACCAGGAAATGCAGCAGCAGCA
GCAGGAGAAGCAGCATCCGCAGGGGCTAAAGGATGATGAGGAGCCTGTTC
CCCCTCTAGCAATTGGCAATGTGCTCAAGAAGGCTCTAAACGCACCTGAT
CCATCAACCGGAGCAGCAGCAGCAGCAGTAGCGGAGGAAGCAGTCGAGAC
GTTGAATCTGTTGGCATTGCTGATGAGTGGAAGGGAGGAAATAGCCCAGG
CTCGATTATATTTGCTGGCAGCGAAAGAGGCGTACAGAGTGCTAGAACCC
TTTTGTCCTGCCCCACCCTCTCCTAGTACACCTACTGCTGTGGCTGCTGC
TATTGGTGACAAGAAAGAGAAAGAAAACACCGAGAAGGAAGAAGAAATCG
CTAACAGCACGGCAGCGGGCGAAAGCGCCCGCAGTAACTCGATCCCCAAC
CCCAACTCAAGATTTCGTCGCCTTATCGACGACCATCACACGCACTCCCT
TTATTATCTTGCCCAGATCTACGGCCAGCTCAAGCAGGCCGATGCCTCGG
CCTGGTATTGCTATCAAACGTTGGCAAAGCAGGTGGAGTGGGAAGAGGGA
AGGTTGGACGTATGGGGATGGGTGAGCAATTGCATGAGTCTGATTGATTA
CTTGGTGGGGGTAAGGGGGGACAGAGAGGCCGCGGCACGGTGCTTGCATG
CGTGTAGTGTGCTGTTGACGAGGGACAAGGAGGGGGAGGAGGGTTGGGCG
GGGCAGGAGAAGAGTATGTTCATAAGGGCTGATATACATAGGAGGTGGGC
GGCTTTGTATTGTTCGACTTTGCAGGAAGCGGCGGAGAGGGTTGAAGAAG
AGGAGACGGGGGCGGCTAGAATGGAGAGAAGAGAGGAGAGTGCAATATCA
GTGGCATTTGTCGTGCATTTTCCCACCCTAGAGACTGCCCTCGCTGGTGG
TAATAGTGCTGCTCCTCCGGCTTCTCTCCCCCAGCCAAAGGCCATCAATA
CGTTTGCGGAGGCTCGATTCGTGTTTTTGCTGGCACAGAAGCACTTGGAT
GCCGCCCTTGAATTCTTTAAGTTGGACGGACATGTGACCGACCACGTTCA
TCTTATGAGAGCCGTGAGTCGACTATACCGTGACTTATCTTTGTTTGAGA
CGGACGAGAAACGCCGCCAGGCCATGTTCTTACGGAGGGCCAACGCTCTG
CAGCCGCTGGTAGACCAATTGAATCCCCGCGCTTATGTGGGTTTGTCAAA
GATGTTGTTGTTTGAATTGGGGGAAGTTTATTTGACATTGTTGGAGGTGA
AGAGTGCTAGGATCGAGCAAAAATTGAAGGGAGGTCGAGGGAGGGAGAGA
GGAAAAGGAGGCGCTTGTATGCCAAGTAAGGCGGACGGTGAGAAATGCGA
CGAGTACTGTCGGTTGGCTATTGGAGCGTTTGAAGGCTTTGTGGCTTTGT
ATCAAAAAGACCCCGAGGGAGGGAGGGAGGGAGGGAAGGCGGTAGTGTGG
GATTTGCCTAGCAAGGATGATTTTAAACCTGTTTTCCGCGCGTTGTTTCA
CTTGGCAAGGTTATACGGACAAATGAGTGTGTATGGAGGTCCAGGAGAAG
GCGCTCACAAGGAGAGGATCGATGGGAATAAAAAAAGTTTAGAGGCTTAC
GAATGGATCCGAGAATTCGCGGCCGAGCAGATGGAGAGGTTGTGGGGTCG
GGACGAGGAAGGGATAGAGGAAGGGAAGGAGATGTATGCGGAGGAGTTGG
GTGTATGTAATGAGATGGTTCGGATGTTGCCGGAGAAGATTGCAAGGATG
CATTATCAGAAGGTGGCCTTTTAGTTTTAAGATAGTGAGGGTGGATGAGG
ATTTAGCGTTAGTCCCTGAGATAAGGGAAAAACTAAAGGTACAGCAGAAA
TAGAATTTCATCAACCCCCCTCTTCAAGCACAAAAAGAAGAATGCATGCT
AGTTTACA

Coding sequence (CDS) from alignment at scaffold_4:602639..605246-

>mRNA_2030 ID=mRNA_2030|Name=jgi.p|Nanoce1779_2|291741|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_4:602639..605246- (Nannochloropsis oceanica)
ATGCAGCAGCAGCAGCAGGAGAAGCAGCATCCGCAGGGGCTAAAGGATGA
TGAGGAGCCTGTTCCCCCTCTAGCAATTGGCAATGTGCTCAAGAAGGCTC
TAAACGCACCTGATCCATCAACCGGAGCAGCAGCAGCAGCAGTAGCGGAG
GAAGCAGTCGAGACGTTGAATCTGTTGGCATTGCTGATGAGTGGAAGGGA
GGAAATAGCCCAGGCTCGATTATATTTGCTGGCAGCGAAAGAGGCGTACA
GAGTGCTAGAACCCTTTTGTCCTGCCCCACCCTCTCCTAGTACACCTACT
GCTGTGGCTGCTGCTATTGGTGACAAGAAAGAGAAAGAAAACACCGAGAA
GGAAGAAGAAATCGCTAACAGCACGGCAGCGGGCGAAAGCGCCCGCAGTA
ACTCGATCCCCAACCCCAACTCAAGATTTCGTCGCCTTATCGACGACCAT
CACACGCACTCCCTTTATTATCTTGCCCAGATCTACGGCCAGCTCAAGCA
GGCCGATGCCTCGGCCTGGTATTGCTATCAAACGTTGGCAAAGCAGGTGG
AGTGGGAAGAGGGAAGGTTGGACGTATGGGGATGGGTGAGCAATTGCATG
AGTCTGATTGATTACTTGGTGGGGGTAAGGGGGGACAGAGAGGCCGCGGC
ACGGTGCTTGCATGCGTGTAGTGTGCTGTTGACGAGGGACAAGGAGGGGG
AGGAGGGTTGGGCGGGGCAGGAGAAGAGTATGTTCATAAGGGCTGATATA
CATAGGAGGTGGGCGGCTTTGTATTGTTCGACTTTGCAGGAAGCGGCGGA
GAGGGTTGAAGAAGAGGAGACGGGGGCGGCTAGAATGGAGAGAAGAGAGG
AGAGTGCAATATCAGTGGCATTTGTCGTGCATTTTCCCACCCTAGAGACT
GCCCTCGCTGGTGGTAATAGTGCTGCTCCTCCGGCTTCTCTCCCCCAGCC
AAAGGCCATCAATACGTTTGCGGAGGCTCGATTCGTGTTTTTGCTGGCAC
AGAAGCACTTGGATGCCGCCCTTGAATTCTTTAAGTTGGACGGACATGTG
ACCGACCACGTTCATCTTATGAGAGCCGTGAGTCGACTATACCGTGACTT
ATCTTTGTTTGAGACGGACGAGAAACGCCGCCAGGCCATGTTCTTACGGA
GGGCCAACGCTCTGCAGCCGCTGGTAGACCAATTGAATCCCCGCGCTTAT
GTGGGTTTGTCAAAGATGTTGTTGTTTGAATTGGGGGAAGTTTATTTGAC
ATTGTTGGAGGTGAAGAGTGCTAGGATCGAGCAAAAATTGAAGGGAGGTC
GAGGGAGGGAGAGAGGAAAAGGAGGCGCTTGTATGCCAAGTAAGGCGGAC
GGTGAGAAATGCGACGAGTACTGTCGGTTGGCTATTGGAGCGTTTGAAGG
CTTTGTGGCTTTGTATCAAAAAGACCCCGAGGGAGGGAGGGAGGGAGGGA
AGGCGGTAGTGTGGGATTTGCCTAGCAAGGATGATTTTAAACCTGTTTTC
CGCGCGTTGTTTCACTTGGCAAGGTTATACGGACAAATGAGTGTGTATGG
AGGTCCAGGAGAAGGCGCTCACAAGGAGAGGATCGATGGGAATAAAAAAA
GTTTAGAGGCTTACGAATGGATCCGAGAATTCGCGGCCGAGCAGATGGAG
AGGTTGTGGGGTCGGGACGAGGAAGGGATAGAGGAAGGGAAGGAGATGTA
TGCGGAGGAGTTGGGTGTATGTAATGAGATGGTTCGGATGTTGCCGGAGA
AGATTGCAAGGATGCATTATCAGAAGGTGGCCTTTTAG

Synonyms

Publications