jgi.p|Nanoce1779_2|232760, mRNA_203 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|232760
Unique NamemRNA_203
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length452
Alignment locationscaffold_3:506700..507496 -

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Properties
Property NameValue
TranscriptId232846
TrackFilteredModels2
ProteinId232760
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:506700..507496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|232760gene_203Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|232760mRNA_203-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_203CDS_203Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_203 ID=mRNA_203|Name=jgi.p|Nanoce1779_2|232760|organism=Nannochloropsis oceanica|type=mRNA|length=452bp
AAGGAGGAGGTTAAGGGGGAGCATGTATGCCAGGTGCACATTTGGGGGAG
TGACTTGTGTAATGGTGTGTGGTGCGTGAAGAAGCAGGCCAAGAGAAAAA
GAGTCCGTTTTGGAGGTTCTTTTTAATGTCTTTTTTGGGGGGGGTCAACA
AATCCCAGGGGCAGACCTTCCCAAAAGTCGCAATCCACTTGCCGTCCCCG
GCATTTACCCACGGTCATTTCTACGTCGCGCTCTTGAGAGCGAGAGAAGG
AGACCCCACCAACATCACCACGATGATCACCCACCCTCTTCTGCACGGCC
AGCCACAAGTGCGTTGGTGGCTTGTGGGAAGAGAAGAACGCGGAAAACCA
TCGTTTCAGCAAACATGGCCATGGCAATAAATAACATCACGGTAACCAGC
ACCGAGGGAATTAGCACGCCTAGAGGTAAGCCCTGCTTCTGTTTCTCGTC
CG
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protein sequence of jgi.p|Nanoce1779_2|232760

>mRNA_203-protein ID=mRNA_203-protein|Name=jgi.p|Nanoce1779_2|232760|organism=Nannochloropsis oceanica|type=polypeptide|length=85bp
MSFLGGVNKSQGQTFPKVAIHLPSPAFTHGHFYVALLRAREGDPTNITTM
ITHPLLHGQPQVRWWLVGREERGKPSFQQTWPWQ*
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mRNA from alignment at scaffold_3:506700..507496-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_203 ID=mRNA_203|Name=jgi.p|Nanoce1779_2|232760|organism=Nannochloropsis oceanica|type=mRNA|length=797bp|location=Sequence derived from alignment at scaffold_3:506700..507496- (Nannochloropsis oceanica)
AAGGAGGAGGTTAAGGGGGAGCATGTATGCCAGGTGCACATTTGGGGGAG
TGACTTGTGTAATGGTGTGTGGTGCGTGAAGAAGCAGGCCAAGAGAAAAA
GAGTCCGTTTTGGAGGTTCTTTTTAATGTCTTTTTTGGGGGGGGTCAACA
AATCCCAGGGGCAGACCTTCCCAAAAGTCGCAATCCACTTGCCGTCCCCG
GCATTTACCCACGGTCATTTCTACGTCGCGCTCTTGAGAGCGAGAGAAGG
AGACCCCACCAACATCACCACGATGATCACCCACCCTCTTCTGCACGGCC
AGCCACAAGTGCGTTGGTGGCTTGTGGGAAGAGAAGAACGCGGAAAACCA
TCGTTTCAGGTGCGCGACAGACGGACAGACAAAAATCAATTTTTACTCTA
GATTTTAAAAAAATATTATTATTTTGCAATCATAGCCACCTATTTTCTGA
GGGCATACATTTACTCATTTGTCTTGTACAATCCATACATTTGTCAATCG
CGGCCTCTTGTTTACCTGACTCTATTCATGACCGCCTCAACTCCCCTTCC
TCTCCCCCGCCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCCTGTCATCCATCGACACCAACCCCATCACCG
CCAACTGCTGCTGTTGCTGTAATTGCTGCTCAAACACTCTCGCTCGTTGT
CTAGCAAACATGGCCATGGCAATAAATAACATCACGGTAACCAGCACCGA
GGGAATTAGCACGCCTAGAGGTAAGCCCTGCTTCTGTTTCTCGTCCG
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Coding sequence (CDS) from alignment at scaffold_3:506700..507496-

>mRNA_203 ID=mRNA_203|Name=jgi.p|Nanoce1779_2|232760|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_3:506700..507496- (Nannochloropsis oceanica)
CAAACATGGCCATGGCAATAAATGTCTTTTTTGGGGGGGGTCAACAAATC
CCAGGGGCAGACCTTCCCAAAAGTCGCAATCCACTTGCCGTCCCCGGCAT
TTACCCACGGTCATTTCTACGTCGCGCTCTTGAGAGCGAGAGAAGGAGAC
CCCACCAACATCACCACGATGATCACCCACCCTCTTCTGCACGGCCAGCC
ACAAGTGCGTTGGTGGCTTGTGGGAAGAGAAGAACGCGGAAAACCATCGT
TTCAGCAAACATGGCCATGGCAATAAATGTCTTTTTTGGGGGGGGTCAAC
AAATCCCAGGGGCAGACCTTCCCAAAAGTCGCAATCCACTTGCCGTCCCC
GGCATTTACCCACGGTCATTTCTACGTCGCGCTCTTGAGAGCGAGAGAAG
GAGACCCCACCAACATCACCACGATGATCACCCACCCTCTTCTGCACGGC
CAGCCACAAGTGCGTTGGTGGCTTGTGGGAAGAGAAGAACGCGGAAAACC
ATCGTTTCAG
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Synonyms
Publications