jgi.p|Nanoce1779_2|524558, mRNA_2029 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|524558
Unique Name	mRNA_2029
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1623
Alignment location	scaffold_4:600927..602549 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	524644
Track	FilteredModels2
ProteinId	524558

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:600927..602549 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524558	gene_2029	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|524558	mRNA_2029-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2029	CDS_2029	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:600927..602549+
coding sequence from alignment at scaffold_4:600927..602549+

mRNA sequence

>mRNA_2029 ID=mRNA_2029|Name=jgi.p|Nanoce1779_2|524558|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp
ATGAATCAAGAGCCACCACCACCCCGCCAGATTCATTGCGTTCTGGGCCC
CGCCGATTTTGTGCAATTGCGCTCGTCGCTCATCCTCGACATCGATCAAA
ACGGCGTGGTCTGGGTGTCCTTGCCGTCACCAGCAGCAGCAGCAGCAGCA
GCAAAAACAGCAGCAGCAGTGGCAGCAACAACATCTACAAAGCCAACTAC
TACTACTTCTTCCACATCTACTACCATATCAACGACAATACCCATATTGA
CCTCCCCATTCTCGACACATGCTGCTCCATCTCCGACAGAGGCACACACA
TTAGGGTTGTACGACAGAGAATTGCTGTGTGAATTGATGGATCTGCGCTC
CTCCTTTGACGTAGTACCTCGCTCTCGCTACTCGGCTGCCCGCTGGGAAA
GCAACCAGTACGAATGCCTCAGCAAGCCAGGTTGTAACCCATTTTTGAAT
CGCTCTGCCCTAAAGCTTGCCAATATAAATATGATTATGCCTTTGACACC
GGTCTCACTCCCTTCGACCGCTTTGTCACCTGTATCAATGACCTTTGTAG
ACTTATGTGGTGGACCTGGTGGCTTTTCCGAGTACTTATTACGACGCCAG
GGTCCTGCAGCAGAGGTGCATGGCTGGGGCATGACCTTAGAAAACTGCGA
CTGTCCATGGGATCGACATAAATTGGCAGATTGGATCGTGGAAGAGGATG
AGGAGGGCGAAAGCGAGAAGGACGAGGAGAAGGACGAGAATGGCGACAAC
CATGCACCTGCTAGCAAACGGCGGAAGACAGCGCCGGCAATGGCACGGAC
TTTGCGCTTCTGCTATGGCCAAGACAGGCGAGGCGATCTCTGTCGGCCCG
AGAACATCCAGTATCTTCGTGCTTTCCTGCCGGGGAGGGTCGACGTGGTT
GTAGCCGACGGGGGATTCGCGGAAGCCCGGGCTCGCTTTGATCAAGAAGC
GATGATGTTGCCTTTATTGGTTAGTGAGGTCTCTGCCATGTTCTATATTC
TGAGAAAAGGCGGGTTATTTGTGTGTAAATTCTTTGATGTGACCTTGCCA
GCGACTGTGCAGTTGATTGGACTGTTGGGATTATTGTTTGAGAGCGTGGC
GATCGTGAAGCCGGTGACAAGCCGACCAGCGAGTTCGGAGAGGTACGTTT
TGGGGCGAGGATTCAGAGGAGAAGGAGGAGAAAACGAGCAAAACAAAGAG
GTTGCGCTGCTGCTTGAGAAGATGTTTGCACGGGTGCAGGCAGGGCAGAC
GGATGGGTTGTCGGAGGAGGAGGAGGAGGAAGGGAATGAGGGAGGGGTGG
CGACGTCCTTGGGGAACTTATTGGCCCCTGGGTCGGCTTTCGCTGCTTGG
CTGCGGATTGTAAATAATAGCTTAATGCGTGCACAGATTAAGGCTTGTTA
TGCTATTCACGAGAAATTAAACACGAAGGATGAGGAAGAGGAGGAGGAAG
TGCAACGAGAAGGAGATGTAGTTGTGGGGTGTCAAGAAAAGGAGGAGCAG
AAGCAGGAGCAGGAGCAGAAGGAGCAGGAAACGGAAAAAGAGACAAAGAA
GAGAGAGAAGGAAAAGGAGACAATGGACATGGAGGCATATCGACGGTTGT
GGGACTTGGACAGAATTCTCTAA

protein sequence of jgi.p|Nanoce1779_2|524558

>mRNA_2029-protein ID=mRNA_2029-protein|Name=jgi.p|Nanoce1779_2|524558|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MNQEPPPPRQIHCVLGPADFVQLRSSLILDIDQNGVVWVSLPSPAAAAAA
AKTAAAVAATTSTKPTTTTSSTSTTISTTIPILTSPFSTHAAPSPTEAHT
LGLYDRELLCELMDLRSSFDVVPRSRYSAARWESNQYECLSKPGCNPFLN
RSALKLANINMIMPLTPVSLPSTALSPVSMTFVDLCGGPGGFSEYLLRRQ
GPAAEVHGWGMTLENCDCPWDRHKLADWIVEEDEEGESEKDEEKDENGDN
HAPASKRRKTAPAMARTLRFCYGQDRRGDLCRPENIQYLRAFLPGRVDVV
VADGGFAEARARFDQEAMMLPLLVSEVSAMFYILRKGGLFVCKFFDVTLP
ATVQLIGLLGLLFESVAIVKPVTSRPASSERYVLGRGFRGEGGENEQNKE
VALLLEKMFARVQAGQTDGLSEEEEEEGNEGGVATSLGNLLAPGSAFAAW
LRIVNNSLMRAQIKACYAIHEKLNTKDEEEEEEVQREGDVVVGCQEKEEQ
KQEQEQKEQETEKETKKREKEKETMDMEAYRRLWDLDRIL*

mRNA from alignment at scaffold_4:600927..602549+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2029 ID=mRNA_2029|Name=jgi.p|Nanoce1779_2|524558|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at scaffold_4:600927..602549+ (Nannochloropsis oceanica)
ATGAATCAAGAGCCACCACCACCCCGCCAGATTCATTGCGTTCTGGGCCC
CGCCGATTTTGTGCAATTGCGCTCGTCGCTCATCCTCGACATCGATCAAA
ACGGCGTGGTCTGGGTGTCCTTGCCGTCACCAGCAGCAGCAGCAGCAGCA
GCAAAAACAGCAGCAGCAGTGGCAGCAACAACATCTACAAAGCCAACTAC
TACTACTTCTTCCACATCTACTACCATATCAACGACAATACCCATATTGA
CCTCCCCATTCTCGACACATGCTGCTCCATCTCCGACAGAGGCACACACA
TTAGGGTTGTACGACAGAGAATTGCTGTGTGAATTGATGGATCTGCGCTC
CTCCTTTGACGTAGTACCTCGCTCTCGCTACTCGGCTGCCCGCTGGGAAA
GCAACCAGTACGAATGCCTCAGCAAGCCAGGTTGTAACCCATTTTTGAAT
CGCTCTGCCCTAAAGCTTGCCAATATAAATATGATTATGCCTTTGACACC
GGTCTCACTCCCTTCGACCGCTTTGTCACCTGTATCAATGACCTTTGTAG
ACTTATGTGGTGGACCTGGTGGCTTTTCCGAGTACTTATTACGACGCCAG
GGTCCTGCAGCAGAGGTGCATGGCTGGGGCATGACCTTAGAAAACTGCGA
CTGTCCATGGGATCGACATAAATTGGCAGATTGGATCGTGGAAGAGGATG
AGGAGGGCGAAAGCGAGAAGGACGAGGAGAAGGACGAGAATGGCGACAAC
CATGCACCTGCTAGCAAACGGCGGAAGACAGCGCCGGCAATGGCACGGAC
TTTGCGCTTCTGCTATGGCCAAGACAGGCGAGGCGATCTCTGTCGGCCCG
AGAACATCCAGTATCTTCGTGCTTTCCTGCCGGGGAGGGTCGACGTGGTT
GTAGCCGACGGGGGATTCGCGGAAGCCCGGGCTCGCTTTGATCAAGAAGC
GATGATGTTGCCTTTATTGGTTAGTGAGGTCTCTGCCATGTTCTATATTC
TGAGAAAAGGCGGGTTATTTGTGTGTAAATTCTTTGATGTGACCTTGCCA
GCGACTGTGCAGTTGATTGGACTGTTGGGATTATTGTTTGAGAGCGTGGC
GATCGTGAAGCCGGTGACAAGCCGACCAGCGAGTTCGGAGAGGTACGTTT
TGGGGCGAGGATTCAGAGGAGAAGGAGGAGAAAACGAGCAAAACAAAGAG
GTTGCGCTGCTGCTTGAGAAGATGTTTGCACGGGTGCAGGCAGGGCAGAC
GGATGGGTTGTCGGAGGAGGAGGAGGAGGAAGGGAATGAGGGAGGGGTGG
CGACGTCCTTGGGGAACTTATTGGCCCCTGGGTCGGCTTTCGCTGCTTGG
CTGCGGATTGTAAATAATAGCTTAATGCGTGCACAGATTAAGGCTTGTTA
TGCTATTCACGAGAAATTAAACACGAAGGATGAGGAAGAGGAGGAGGAAG
TGCAACGAGAAGGAGATGTAGTTGTGGGGTGTCAAGAAAAGGAGGAGCAG
AAGCAGGAGCAGGAGCAGAAGGAGCAGGAAACGGAAAAAGAGACAAAGAA
GAGAGAGAAGGAAAAGGAGACAATGGACATGGAGGCATATCGACGGTTGT
GGGACTTGGACAGAATTCTCTAA

Coding sequence (CDS) from alignment at scaffold_4:600927..602549+

>mRNA_2029 ID=mRNA_2029|Name=jgi.p|Nanoce1779_2|524558|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at scaffold_4:600927..602549+ (Nannochloropsis oceanica)
ATGAATCAAGAGCCACCACCACCCCGCCAGATTCATTGCGTTCTGGGCCC
CGCCGATTTTGTGCAATTGCGCTCGTCGCTCATCCTCGACATCGATCAAA
ACGGCGTGGTCTGGGTGTCCTTGCCGTCACCAGCAGCAGCAGCAGCAGCA
GCAAAAACAGCAGCAGCAGTGGCAGCAACAACATCTACAAAGCCAACTAC
TACTACTTCTTCCACATCTACTACCATATCAACGACAATACCCATATTGA
CCTCCCCATTCTCGACACATGCTGCTCCATCTCCGACAGAGGCACACACA
TTAGGGTTGTACGACAGAGAATTGCTGTGTGAATTGATGGATCTGCGCTC
CTCCTTTGACGTAGTACCTCGCTCTCGCTACTCGGCTGCCCGCTGGGAAA
GCAACCAGTACGAATGCCTCAGCAAGCCAGGTTGTAACCCATTTTTGAAT
CGCTCTGCCCTAAAGCTTGCCAATATAAATATGATTATGCCTTTGACACC
GGTCTCACTCCCTTCGACCGCTTTGTCACCTGTATCAATGACCTTTGTAG
ACTTATGTGGTGGACCTGGTGGCTTTTCCGAGTACTTATTACGACGCCAG
GGTCCTGCAGCAGAGGTGCATGGCTGGGGCATGACCTTAGAAAACTGCGA
CTGTCCATGGGATCGACATAAATTGGCAGATTGGATCGTGGAAGAGGATG
AGGAGGGCGAAAGCGAGAAGGACGAGGAGAAGGACGAGAATGGCGACAAC
CATGCACCTGCTAGCAAACGGCGGAAGACAGCGCCGGCAATGGCACGGAC
TTTGCGCTTCTGCTATGGCCAAGACAGGCGAGGCGATCTCTGTCGGCCCG
AGAACATCCAGTATCTTCGTGCTTTCCTGCCGGGGAGGGTCGACGTGGTT
GTAGCCGACGGGGGATTCGCGGAAGCCCGGGCTCGCTTTGATCAAGAAGC
GATGATGTTGCCTTTATTGGTTAGTGAGGTCTCTGCCATGTTCTATATTC
TGAGAAAAGGCGGGTTATTTGTGTGTAAATTCTTTGATGTGACCTTGCCA
GCGACTGTGCAGTTGATTGGACTGTTGGGATTATTGTTTGAGAGCGTGGC
GATCGTGAAGCCGGTGACAAGCCGACCAGCGAGTTCGGAGAGGTACGTTT
TGGGGCGAGGATTCAGAGGAGAAGGAGGAGAAAACGAGCAAAACAAAGAG
GTTGCGCTGCTGCTTGAGAAGATGTTTGCACGGGTGCAGGCAGGGCAGAC
GGATGGGTTGTCGGAGGAGGAGGAGGAGGAAGGGAATGAGGGAGGGGTGG
CGACGTCCTTGGGGAACTTATTGGCCCCTGGGTCGGCTTTCGCTGCTTGG
CTGCGGATTGTAAATAATAGCTTAATGCGTGCACAGATTAAGGCTTGTTA
TGCTATTCACGAGAAATTAAACACGAAGGATGAGGAAGAGGAGGAGGAAG
TGCAACGAGAAGGAGATGTAGTTGTGGGGTGTCAAGAAAAGGAGGAGCAG
AAGCAGGAGCAGGAGCAGAAGGAGCAGGAAACGGAAAAAGAGACAAAGAA
GAGAGAGAAGGAAAAGGAGACAATGGACATGGAGGCATATCGACGGTTGT
GGGACTTGGACAGAATTCTCTAA

Synonyms

Publications