jgi.p|Nanoce1779_2|578777, mRNA_2024 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578777
Unique Name	mRNA_2024
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	697
Alignment location	scaffold_4:586767..588297 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	578863
Track	FilteredModels2
ProteinId	578777

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:586767..588297 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578777	gene_2024	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578777	mRNA_2024-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2024	CDS_2024	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:586767..588297+
coding sequence from alignment at scaffold_4:586767..588297+

mRNA sequence

>mRNA_2024 ID=mRNA_2024|Name=jgi.p|Nanoce1779_2|578777|organism=Nannochloropsis oceanica|type=mRNA|length=697bp
CAGGTCTCACGCACCACCGCCAGGGCTATATTTGATCCCGAAGACTCTTC
CGTCGCCTCGGTCATCGACAATCGACGGCGAGCATCAGCCGTGCCCAGAA
AGCCTCCTTTCACCCCCTTCAGCTAGCTAGTTAGCAGCAGTATGTTCAAA
AGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAAGTCCAGCGT
ACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAATATCCGCGGTTGGAAA
GCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAGGTCATCAAA
ATTCCGGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTT
CAGCCTCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAAT
ATCCCGGCTTCATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTT
GTCTTGGGTGGGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGG
TAAAATGGAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGATTCGCGCGG
AGGGGAAGGAAATGGAGCTGGCCTTGGGGTTAACGAAACTGTCAACGACT
GACATACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGT
GAACGACGGCTTGTGGAGAACGGAGTATATCGACTAAAGCAAAGTAG

protein sequence of jgi.p|Nanoce1779_2|578777

>mRNA_2024-protein ID=mRNA_2024-protein|Name=jgi.p|Nanoce1779_2|578777|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MFKRFNKEDFSSNGQVKSSVRRGIRCEILEQYPRLESVMGDIFPQKASVE
VIKIPGHVQVVVLEGEPIFFSLRDGQYFPTLRVLHQYPGFMSEVQVDKGA
IRFVLGGANIMCPGLTSKGGKMEDELPEGTAVAIRAEGKEMELALGLTKL
STTDIREKNKGIAIELIHYVNDGLWRTEYID*

mRNA from alignment at scaffold_4:586767..588297+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2024 ID=mRNA_2024|Name=jgi.p|Nanoce1779_2|578777|organism=Nannochloropsis oceanica|type=mRNA|length=1531bp|location=Sequence derived from alignment at scaffold_4:586767..588297+ (Nannochloropsis oceanica)
CAGGTCTCACGCACCACCGCCAGGGCTATATTTGATCCCGAAGACTCTTC
CGTCGCCTCGGTCATCGACAATCGACGGCGAGCATCAGCCGTGCCCAGAA
AGCCTCCTTTCACCCCCTTCAGCTAGCTAGTTAGCAGCAGTATGTTCAAA
AGGTATGCGTCAGTATAGTGCCGACTGGCCGTATCGCTCAGGTGGATGGG
CAAATTATCTTTCTCCCCTTTCCGCCTTGACGCTCAAAACTTCTTTCCCT
GCTCCATTCCTTGCAAGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCA
AGTCAAGTCCAGCGTACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAAT
ATCCGCGGTTGGAAAGCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCT
GTGGAGGTCATCAAAATGTACGTATGCTTTCCAGGGCACAGATGAGAAGG
ACATGGTTGGAAGGGAAATGGACGGCTGACATGGAATAAGTGCTTTGGTT
GCTCTGTCAGTTGACTCATTATTGCTTTATGACTATTATGTCTACAGTCC
GGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTTCAGCC
TCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAATGTACG
TTTAGTCTGCGACGCCCTCCAATTTTTTCTCTGTATGCACGCATGCTTTT
TAAATATGTAGTAAGTGTGATTTTCATTCTCCCTTGCAAATGACAGTCAT
TGGTATTTGACCCCGCGAGTGGACGCAAGCACGCATTCGCTTTATTACCA
CACACAGCATTCGCTTTATAACCACACACAATTTCGAATGATCCATTTTT
CCCCTGACTTCTTTCACACCCTCAACAACGACTCAAACAGATCCCGGCTT
CATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTTGTCTTGGGTG
GGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGGTAAAATGGAA
GACGAGTTGCCGGAAGGAACGGCGGTGGTACGTTACATTGAGACAACGAG
GGAAGGAGGAAAAGGAAACAATTACAGGAGGGGCAGATGACTCATTATTT
TTATTTCTCCACCTCTTTAATGAATGCAGGCGATTCGCGCGGAGGGGAAG
GAAATGGAGCTGGCCTTGGGGTTAACGAAACTGTCAACGACTGACATGTA
CGCATCTTTCTGTCTTGTAACTTTCAATGTCAGATGCGCTTTCTTATTGT
GTTCCCATATTCTTGATATCATTTTTAAGTGTCTTTTTGTGGTTGGACTG
CCCAAACTCACATTTTCCATATGTATCATCTACGTTTTCCATGCATACGC
AGACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGTGAA
CGACGGCTTGTGGAGGTATGTTTCGAAAGGAAAAATGTTTTCACACAACG
ATCTCGCCCTCACTATTTCCTCCCTTTCTCCCTCCCATACGACCTCGCAC
AGAACGGAGTATATCGACTAAAGCAAAGTAG

Coding sequence (CDS) from alignment at scaffold_4:586767..588297+

>mRNA_2024 ID=mRNA_2024|Name=jgi.p|Nanoce1779_2|578777|organism=Nannochloropsis oceanica|type=CDS|length=3822bp|location=Sequence derived from alignment at scaffold_4:586767..588297+ (Nannochloropsis oceanica)
ATGTTCAAAAGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAA
GTCCAGCGTACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAATATCCGC
GGTTGGAAAGCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAG
GTCATCAAAATTCCGGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCC
CATTTTTTTCAGCCTCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTC
TCCATCAATATCCCGGCTTCATGTCTGAAGTACAAGTAGACAAGGGCGCC
ATCCGCTTTGTCTTGGGTGGGGCCAATATTATGTGTCCGGGCCTTACCTC
CAAAGGAGGTAAAATGGAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGA
TTCGCGCGGAGGGGAAGGAAATGGAGCTGGCCTTGGGGTTAACGAAACTG
TCAACGACTGACATACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCAT
CCATTATGTGAACGACGGCTTGTGGAGAACGGAGTATATCGACTAAATGT
TCAAAAGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAAGTCC
AGCGTACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAATATCCGCGGTT
GGAAAGCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAGGTCA
TCAAAATTCCGGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATT
TTTTTCAGCCTCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCA
TCAATATCCCGGCTTCATGTCTGAAGTACAAGTAGACAAGGGCGCCATCC
GCTTTGTCTTGGGTGGGGCCAATATTATGTGTCCGGGCCTTACCTCCAAA
GGAGGTAAAATGGAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGATTCG
CGCGGAGGGGAAGGAAATGGAGCTGGCCTTGGGGTTAACGAAACTGTCAA
CGACTGACATACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCAT
TATGTGAACGACGGCTTGTGGAGAACGGAGTATATCGACTAAATGTTCAA
AAGGTTTAACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAAGTCCAGCG
TACGGCGTGGCATCCGCTGCGAGATTTTGGAGCAATATCCGCGGTTGGAA
AGCGTGATGGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAGGTCATCAA
AATTCCGGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTT
TCAGCCTCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAA
TATCCCGGCTTCATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTT
TGTCTTGGGTGGGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAG
GTAAAATGGAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGATTCGCGCG
GAGGGGAAGGAAATGGAGCTGGCCTTGGGGTTAACGAAACTGTCAACGAC
TGACATACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATG
TGAACGACGGCTTGTGGAGAACGGAGTATATCGACTAAATGTTCAAAAGG
TTTAACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAAGTCCAGCGTACG
GCGTGGCATCCGCTGCGAGATTTTGGAGCAATATCCGCGGTTGGAAAGCG
TGATGGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAGGTCATCAAAATT
CCGGGTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTTCAG
CCTCCGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAATATC
CCGGCTTCATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTTGTC
TTGGGTGGGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGGTAA
AATGGAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGATTCGCGCGGAGG
GGAAGGAAATGGAGCTGGCCTTGGGGTTAACGAAACTGTCAACGACTGAC
ATACGGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGTGAA
CGACGGCTTGTGGAGAACGGAGTATATCGACTAAATGTTCAAAAGGTTTA
ACAAAGAGGATTTCTCGTCCAATGGCCAAGTCAAGTCCAGCGTACGGCGT
GGCATCCGCTGCGAGATTTTGGAGCAATATCCGCGGTTGGAAAGCGTGAT
GGGGGACATTTTTCCCCAGAAGGCCTCTGTGGAGGTCATCAAAATTCCGG
GTCACGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTTCAGCCTC
CGGGACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAATATCCCGG
CTTCATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTTGTCTTGG
GTGGGGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGGTAAAATG
GAAGACGAGTTGCCGGAAGGAACGGCGGTGGCGATTCGCGCGGAGGGGAA
GGAAATGGAGCTGGCCTTGGGGTTAACGAAACTGTCAACGACTGACATAC
GGGAAAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGTGAACGAC
GGCTTGTGGAGAACGGAGTATATCGACTAAATGTTCAAAAGGTTTAACAA
AGAGGATTTCTCGTCCAATGGCCAAGTCAAGTCCAGCGTACGGCGTGGCA
TCCGCTGCGAGATTTTGGAGCAATATCCGCGGTTGGAAAGCGTGATGGGG
GACATTTTTCCCCAGAAGGCCTCTGTGGAGGTCATCAAAATTCCGGGTCA
CGTGCAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTTCAGCCTCCGGG
ACGGGCAGTACTTCCCCACCCTTCGCGTTCTCCATCAATATCCCGGCTTC
ATGTCTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTTGTCTTGGGTGG
GGCCAATATTATGTGTCCGGGCCTTACCTCCAAAGGAGGTAAAATGGAAG
ACGAGTTGCCGGAAGGAACGGCGGTGGCGATTCGCGCGGAGGGGAAGGAA
ATGGAGCTGGCCTTGGGGTTAACGAAACTGTCAACGACTGACATACGGGA
AAAGAACAAAGGCATAGCCATCGAGCTCATCCATTATGTGAACGACGGCT
TGTGGAGAACGGAGTATATCGACTAAATGTTCAAAAGGTTTAACAAAGAG
GATTTCTCGTCCAATGGCCAAGTCAAGTCCAGCGTACGGCGTGGCATCCG
CTGCGAGATTTTGGAGCAATATCCGCGGTTGGAAAGCGTGATGGGGGACA
TTTTTCCCCAGAAGGCCTCTGTGGAGGTCATCAAAATTCCGGGTCACGTG
CAAGTGGTGGTTCTCGAAGGTGAGCCCATTTTTTTCAGCCTCCGGGACGG
GCAGTACTTCCCCACCCTTCGCGTTCTCCATCAATATCCCGGCTTCATGT
CTGAAGTACAAGTAGACAAGGGCGCCATCCGCTTTGTCTTGGGTGGGGCC
AATATTATGTGTCCGGGCCTTACCTCCAAAGGAGGTAAAATGGAAGACGA
GTTGCCGGAAGGAACGGCGGTGGCGATTCGCGCGGAGGGGAAGGAAATGG
AGCTGGCCTTGGGGTTAACGAAACTGTCAACGACTGACATACGGGAAAAG
AACAAAGGCATAGCCATCGAGCTCATCCATTATGTGAACGACGGCTTGTG
GAGAACGGAGTATATCGACTAA

Synonyms

Publications