jgi.p|Nanoce1779_2|578772, mRNA_2023 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578772
Unique NamemRNA_2023
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length991
Alignment locationscaffold_4:585584..586574 -

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Properties
Property NameValue
TranscriptId578858
TrackFilteredModels2
ProteinId578772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:585584..586574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578772gene_2023Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578772mRNA_2023-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2023CDS_2023Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2023 ID=mRNA_2023|Name=jgi.p|Nanoce1779_2|578772|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
ACAGGTCGCGAGGACGACCACAACGACACGGACACGGACGGCATGGCAAT
GAAACTTCTTTGCTTTACTCTGCTGTGTTGCAGCGTCCTCCCTTCAATGG
CGTACCTCATGCCCTTTATGAAAGCTCCTTCCTGTAACCCCTCTTCTAGT
GGCAAGAACACTATCGCGCGGCGAGATGCCGTGGCAGGAACCGGAATGAT
GGCGGCCCTGATATTAGCCGTGGGCGAAGGCACGGCAACGGCCTTTGGGT
TGCCTCTGGGGGCCTCGGCGGAGGAGCCAGTGAAAGTTAGAAAGGTTAAC
CCCAACAAGATCCGCGAGACTGCCAATGGCGTTAAATACTTTGATGTGAA
AGTGGGAGAGGGCGCATCGCCACGTGAAGGGAACTATGTAATTATCACCT
ACATCGGACAGCTTTCGGATGGGACGATTTTTGATGGCCTGCACGGACCG
GGGAAGAAGCCGTTGGCGTTTAAGCTGGGGGCGAAGCAAGTTATCCCCGG
CTTGGAGGAGGCATTATTAGGCATGCAACCAGGAGGGGAACGGCAGTGTT
TGGTGCCGGCTGAGTTGGCATTCGGGGAGAAAGGTGTGTGCACGGACAAG
GGGGAGTGCTTGGTCCCGCCAAACTCAAATGTCAAGTATGACGTGACGTT
GAAGCGTGTAGCGGTCTCGCCTATCTAAGAGACATTTCCTTTGCTAAAGC
GTACCGCAGCATTCAATACTGATGGTACTCTGAGAGGAAAAAAAGGAAAA
GAATCACGCGGAGGTCTTCTTTATTTTCACGCCCACAATCCCATACATGA
ACACCCCCTTTTGTGGCGTCCATGTGTTGCACATTCGGTATTCTTGATAG
ATGACATCTCTAATCAGGGAAGTAGAGTCTGGCATTCATGCTCCGCATTG
AAAGAAAGTCTACCACAAGGGAGGACAGGGGTAAATAGTAAACACATTCA
AGTAACCACAACCAATCAGGCGATCCAGCAAGCCCCTCTAA
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protein sequence of jgi.p|Nanoce1779_2|578772

>mRNA_2023-protein ID=mRNA_2023-protein|Name=jgi.p|Nanoce1779_2|578772|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MAMKLLCFTLLCCSVLPSMAYLMPFMKAPSCNPSSSGKNTIARRDAVAGT
GMMAALILAVGEGTATAFGLPLGASAEEPVKVRKVNPNKIRETANGVKYF
DVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQV
IPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYD
VTLKRVAVSPI*
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mRNA from alignment at scaffold_4:585584..586574-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2023 ID=mRNA_2023|Name=jgi.p|Nanoce1779_2|578772|organism=Nannochloropsis oceanica|type=mRNA|length=991bp|location=Sequence derived from alignment at scaffold_4:585584..586574- (Nannochloropsis oceanica)
ACAGGTCGCGAGGACGACCACAACGACACGGACACGGACGGCATGGCAAT
GAAACTTCTTTGCTTTACTCTGCTGTGTTGCAGCGTCCTCCCTTCAATGG
CGTACCTCATGCCCTTTATGAAAGCTCCTTCCTGTAACCCCTCTTCTAGT
GGCAAGAACACTATCGCGCGGCGAGATGCCGTGGCAGGAACCGGAATGAT
GGCGGCCCTGATATTAGCCGTGGGCGAAGGCACGGCAACGGCCTTTGGGT
TGCCTCTGGGGGCCTCGGCGGAGGAGCCAGTGAAAGTTAGAAAGGTTAAC
CCCAACAAGATCCGCGAGACTGCCAATGGCGTTAAATACTTTGATGTGAA
AGTGGGAGAGGGCGCATCGCCACGTGAAGGGAACTATGTAATTATCACCT
ACATCGGACAGCTTTCGGATGGGACGATTTTTGATGGCCTGCACGGACCG
GGGAAGAAGCCGTTGGCGTTTAAGCTGGGGGCGAAGCAAGTTATCCCCGG
CTTGGAGGAGGCATTATTAGGCATGCAACCAGGAGGGGAACGGCAGTGTT
TGGTGCCGGCTGAGTTGGCATTCGGGGAGAAAGGTGTGTGCACGGACAAG
GGGGAGTGCTTGGTCCCGCCAAACTCAAATGTCAAGTATGACGTGACGTT
GAAGCGTGTAGCGGTCTCGCCTATCTAAGAGACATTTCCTTTGCTAAAGC
GTACCGCAGCATTCAATACTGATGGTACTCTGAGAGGAAAAAAAGGAAAA
GAATCACGCGGAGGTCTTCTTTATTTTCACGCCCACAATCCCATACATGA
ACACCCCCTTTTGTGGCGTCCATGTGTTGCACATTCGGTATTCTTGATAG
ATGACATCTCTAATCAGGGAAGTAGAGTCTGGCATTCATGCTCCGCATTG
AAAGAAAGTCTACCACAAGGGAGGACAGGGGTAAATAGTAAACACATTCA
AGTAACCACAACCAATCAGGCGATCCAGCAAGCCCCTCTAA
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Coding sequence (CDS) from alignment at scaffold_4:585584..586574-

>mRNA_2023 ID=mRNA_2023|Name=jgi.p|Nanoce1779_2|578772|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_4:585584..586574- (Nannochloropsis oceanica)
ATGGCAATGAAACTTCTTTGCTTTACTCTGCTGTGTTGCAGCGTCCTCCC
TTCAATGGCGTACCTCATGCCCTTTATGAAAGCTCCTTCCTGTAACCCCT
CTTCTAGTGGCAAGAACACTATCGCGCGGCGAGATGCCGTGGCAGGAACC
GGAATGATGGCGGCCCTGATATTAGCCGTGGGCGAAGGCACGGCAACGGC
CTTTGGGTTGCCTCTGGGGGCCTCGGCGGAGGAGCCAGTGAAAGTTAGAA
AGGTTAACCCCAACAAGATCCGCGAGACTGCCAATGGCGTTAAATACTTT
GATGTGAAAGTGGGAGAGGGCGCATCGCCACGTGAAGGGAACTATGTAAT
TATCACCTACATCGGACAGCTTTCGGATGGGACGATTTTTGATGGCCTGC
ACGGACCGGGGAAGAAGCCGTTGGCGTTTAAGCTGGGGGCGAAGCAAGTT
ATCCCCGGCTTGGAGGAGGCATTATTAGGCATGCAACCAGGAGGGGAACG
GCAGTGTTTGGTGCCGGCTGAGTTGGCATTCGGGGAGAAAGGTGTGTGCA
CGGACAAGGGGGAGTGCTTGGTCCCGCCAAACTCAAATGTCAAGTATGAC
GTGACGTTGAAGCGTGTAGCGGTCTCGCCTATCTAA
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Synonyms
Publications