jgi.p|Nanoce1779_2|578771, mRNA_2022 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578771
Unique NamemRNA_2022
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1072
Alignment locationscaffold_4:584245..585583 +

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Properties
Property NameValue
TranscriptId578857
TrackFilteredModels2
ProteinId578771
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:584245..585583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578771gene_2022Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578771mRNA_2022-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2022CDS_2022Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2022 ID=mRNA_2022|Name=jgi.p|Nanoce1779_2|578771|organism=Nannochloropsis oceanica|type=mRNA|length=1072bp
ACAGAAAGTACATAACCAAGGCTATGGACAGTCGGAAAGGTACCGCAGTC
GCTGCGGCCGCCCTGGACAAGAAGATGCCCGCGGACACATCTTCAACGTT
TTCATCGCAGGAGCAGACCGTGGAGGAGTACCTCAAGGCACACTGCAGCC
AATTGGTAGGAGATCTGAATGCCCACGCCGAAGGCCTCATCAAGAACTTG
CAAGAAGAACTTGAGAAGGGCAAGGCCGAGATCTTGGCGCTTGCCCAAGA
CAATAATGCACTGGCTCCTGCCGCAGTACAACCACCCAGCAGTGACAGCA
GCACTGATGCCTCCTCAGGAGGCGCTGCCACCTCTTACTCTCATCCTCGA
CCAGCAGAAGCCGCCGCAGCAGCAGCCAGTGCCCCACCCACCGTCCCCGC
ATACCAAACAATCATTCTCCACGTCAAAGAAGGCCCATATGCCAGTTGTA
CTTTTAAACTGATTCAAAGCAAGGCACGGAAGGAGTTCATCATTGGAAGG
TCAACGGGAAAAAAGGTGAAGGACCATGGGGTCAGCTTGCCCCAGGACCC
GGAGGTATCGACGGTGCATGGACGGGTTGAGGTGCGGGGGAACGGCAATA
TAGTTTTTGAGGACCTGGGGAGCACGAATGGGAGTTTTATCAATAGTATT
AGTCTGGAAGAGCGCGTGCCTCAAGTCCTTAGAACGGACGACGTGTTGAA
GTGTGGTGGAACCATCATGACAGTGGAGCTGCAGCAACAAGGCGAAGCCC
AGTGAGACTGGAGAAAGAGTATGGAGAGAGAGATGGAGGGGAATGACAAA
GTCAATTAATCGTCTTAATTGTGGTTCTCTTCTCAGATCGTGTGTATGTT
TGATTCCTTGTTTTTCTCTCCTCTAAAAAGCAGCTGTACATGAAGAAATC
AAACGGAAGCAAGCAAGGAGATAATCGAAGGCACCGCGTGGCCTAGGAAA
AAGAAATGAGTGAATGGTTAAGCATGTTAGAGAAAACAAGGTGTTATGCT
CAGTGTGTTGGTATGGTGGAGGCTCAGAGAGCCGACAGCAAAGACAAGGA
ACGAATACATACGAACAACAAA
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protein sequence of jgi.p|Nanoce1779_2|578771

>mRNA_2022-protein ID=mRNA_2022-protein|Name=jgi.p|Nanoce1779_2|578771|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MDSRKGTAVAAAALDKKMPADTSSTFSSQEQTVEEYLKAHCSQLVGDLNA
HAEGLIKNLQEELEKGKAEILALAQDNNALAPAAVQPPSSDSSTDASSGG
AATSYSHPRPAEAAAAAASAPPTVPAYQTIILHVKEGPYASCTFKLIQSK
ARKEFIIGRSTGKKVKDHGVSLPQDPEVSTVHGRVEVRGNGNIVFEDLGS
TNGSFINSISLEERVPQVLRTDDVLKCGGTIMTVELQQQGEAQ*
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mRNA from alignment at scaffold_4:584245..585583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2022 ID=mRNA_2022|Name=jgi.p|Nanoce1779_2|578771|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp|location=Sequence derived from alignment at scaffold_4:584245..585583+ (Nannochloropsis oceanica)
ACAGAAAGTACATAACCAAGGCTATGGACAGTCGGAAAGGTACCGCAGTC
GCTGCGGCCGCCCTGGACAAGAAGATGCCCGCGGACACATCTTCAACGTT
TTCATCGCAGGAGCAGACCGTGGAGGAGTACCTCAAGGCACACTGCAGCC
AATTGGTAGGAGATCTGAATGCCCACGCCGAAGGCCTCATCAAGAACTTG
CAAGAAGAACTTGAGAAGGGCAAGGCCGAGATCTTGGCGCTTGCCCAAGA
CAATAATGGTAGGCTTTGATGGCACCATGAATGACGATGGGGAGGCTGGG
AGGGAGGGAATGAAGGAGGCAATTAAGTCCGTACTTATGAAAGCCACGCA
TTCTTACTTCCACTTCTCCACGCAAACAAAACCAGCACTGGCTCCTGCCG
CAGTACAACCACCCAGCAGTGACAGCAGCACTGATGCCTCCTCAGGAGGC
GCTGCCACCTCTTACTCTCATCCTCGACCAGCAGAAGCCGCCGCAGCAGC
AGCCAGTGCCCCACCCACCGTCCCCGCATACCAAACAATCATTCTCCACG
TCAAAGAAGGCCCATATGCCAGTTGTACTTTTAAACTGATTCAAAGCAAG
GCACGGAAGGAGTTCATCATTGGAAGGTCAACGGGAAAAAAGGTGAAGGA
CCATGGGGTCAGCTTGCCCCAGGACCCGGAGGTATCGACGGTGCATGGAC
GGGTTGAGGTGCGGGGGAACGGCAATATAGTTTTTGAGGACCTGGGGAGC
ACGAATGGGAGTTTTATCAATAGGTATGTAGATTTGGGATGGGGGGCGGA
AATAAGGGGGGTGGGAGGGAGATGGACTAGGTAGTATATTTGAGTTATTT
TTTATCATTAAATTCTCGTCACCCGGCTCACATCCCTCTTTCTTACCTGT
ACCTTCTTAACAGTATTAGTCTGGAAGAGCGCGTGCCTCAAGTCCTTAGA
ACGGACGACGTGTTGAAGTGTGGTGGAACCATCATGACAGTGGAGCTGCA
GCAACAAGGCGAAGCCCAGTGAGACTGGAGAAAGAGTATGGAGAGAGAGA
TGGAGGGGAATGACAAAGTCAATTAATCGTCTTAATTGTGGTTCTCTTCT
CAGATCGTGTGTATGTTTGATTCCTTGTTTTTCTCTCCTCTAAAAAGCAG
CTGTACATGAAGAAATCAAACGGAAGCAAGCAAGGAGATAATCGAAGGCA
CCGCGTGGCCTAGGAAAAAGAAATGAGTGAATGGTTAAGCATGTTAGAGA
AAACAAGGTGTTATGCTCAGTGTGTTGGTATGGTGGAGGCTCAGAGAGCC
GACAGCAAAGACAAGGAACGAATACATACGAACAACAAA
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Coding sequence (CDS) from alignment at scaffold_4:584245..585583+

>mRNA_2022 ID=mRNA_2022|Name=jgi.p|Nanoce1779_2|578771|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_4:584245..585583+ (Nannochloropsis oceanica)
ATGGACAGTCGGAAAGGTACCGCAGTCGCTGCGGCCGCCCTGGACAAGAA
GATGCCCGCGGACACATCTTCAACGTTTTCATCGCAGGAGCAGACCGTGG
AGGAGTACCTCAAGGCACACTGCAGCCAATTGGTAGGAGATCTGAATGCC
CACGCCGAAGGCCTCATCAAGAACTTGCAAGAAGAACTTGAGAAGGGCAA
GGCCGAGATCTTGGCGCTTGCCCAAGACAATAATGCACTGGCTCCTGCCG
CAGTACAACCACCCAGCAGTGACAGCAGCACTGATGCCTCCTCAGGAGGC
GCTGCCACCTCTTACTCTCATCCTCGACCAGCAGAAGCCGCCGCAGCAGC
AGCCAGTGCCCCACCCACCGTCCCCGCATACCAAACAATCATTCTCCACG
TCAAAGAAGGCCCATATGCCAGTTGTACTTTTAAACTGATTCAAAGCAAG
GCACGGAAGGAGTTCATCATTGGAAGGTCAACGGGAAAAAAGGTGAAGGA
CCATGGGGTCAGCTTGCCCCAGGACCCGGAGGTATCGACGGTGCATGGAC
GGGTTGAGGTGCGGGGGAACGGCAATATAGTTTTTGAGGACCTGGGGAGC
ACGAATGGGAGTTTTATCAATAGTATTAGTCTGGAAGAGCGCGTGCCTCA
AGTCCTTAGAACGGACGACGTGTTGAAGTGTGGTGGAACCATCATGACAG
TGGAGCTGCAGCAACAAGGCGAAGCCCAGTGAATGGACAGTCGGAAAGGT
ACCGCAGTCGCTGCGGCCGCCCTGGACAAGAAGATGCCCGCGGACACATC
TTCAACGTTTTCATCGCAGGAGCAGACCGTGGAGGAGTACCTCAAGGCAC
ACTGCAGCCAATTGGTAGGAGATCTGAATGCCCACGCCGAAGGCCTCATC
AAGAACTTGCAAGAAGAACTTGAGAAGGGCAAGGCCGAGATCTTGGCGCT
TGCCCAAGACAATAATGCACTGGCTCCTGCCGCAGTACAACCACCCAGCA
GTGACAGCAGCACTGATGCCTCCTCAGGAGGCGCTGCCACCTCTTACTCT
CATCCTCGACCAGCAGAAGCCGCCGCAGCAGCAGCCAGTGCCCCACCCAC
CGTCCCCGCATACCAAACAATCATTCTCCACGTCAAAGAAGGCCCATATG
CCAGTTGTACTTTTAAACTGATTCAAAGCAAGGCACGGAAGGAGTTCATC
ATTGGAAGGTCAACGGGAAAAAAGGTGAAGGACCATGGGGTCAGCTTGCC
CCAGGACCCGGAGGTATCGACGGTGCATGGACGGGTTGAGGTGCGGGGGA
ACGGCAATATAGTTTTTGAGGACCTGGGGAGCACGAATGGGAGTTTTATC
AATAGTATTAGTCTGGAAGAGCGCGTGCCTCAAGTCCTTAGAACGGACGA
CGTGTTGAAGTGTGGTGGAACCATCATGACAGTGGAGCTGCAGCAACAAG
GCGAAGCCCAGTGAATGGACAGTCGGAAAGGTACCGCAGTCGCTGCGGCC
GCCCTGGACAAGAAGATGCCCGCGGACACATCTTCAACGTTTTCATCGCA
GGAGCAGACCGTGGAGGAGTACCTCAAGGCACACTGCAGCCAATTGGTAG
GAGATCTGAATGCCCACGCCGAAGGCCTCATCAAGAACTTGCAAGAAGAA
CTTGAGAAGGGCAAGGCCGAGATCTTGGCGCTTGCCCAAGACAATAATGC
ACTGGCTCCTGCCGCAGTACAACCACCCAGCAGTGACAGCAGCACTGATG
CCTCCTCAGGAGGCGCTGCCACCTCTTACTCTCATCCTCGACCAGCAGAA
GCCGCCGCAGCAGCAGCCAGTGCCCCACCCACCGTCCCCGCATACCAAAC
AATCATTCTCCACGTCAAAGAAGGCCCATATGCCAGTTGTACTTTTAAAC
TGATTCAAAGCAAGGCACGGAAGGAGTTCATCATTGGAAGGTCAACGGGA
AAAAAGGTGAAGGACCATGGGGTCAGCTTGCCCCAGGACCCGGAGGTATC
GACGGTGCATGGACGGGTTGAGGTGCGGGGGAACGGCAATATAGTTTTTG
AGGACCTGGGGAGCACGAATGGGAGTTTTATCAATAGTATTAGTCTGGAA
GAGCGCGTGCCTCAAGTCCTTAGAACGGACGACGTGTTGAAGTGTGGTGG
AACCATCATGACAGTGGAGCTGCAGCAACAAGGCGAAGCCCAGTGA
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Synonyms
Publications