jgi.p|Nanoce1779_2|578759, mRNA_2021 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578759
Unique NamemRNA_2021
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length980
Alignment locationscaffold_4:580102..581081 +

Link to JBrowse

Properties
Property NameValue
TranscriptId578845
TrackFilteredModels2
ProteinId578759
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:580102..581081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578759gene_2021Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578759mRNA_2021-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2021CDS_2021Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2021 ID=mRNA_2021|Name=jgi.p|Nanoce1779_2|578759|organism=Nannochloropsis oceanica|type=mRNA|length=980bp
CATCATCACTACCCCCACCACCAATGGAAGCCTTTCAACCCCCTCTGCTC
CTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCCCCTCCTCCTCCTCCT
CCTTCCGGCATCCCCATTTCTACTCTCACCCATTCTGTGCCCCCTCTTTT
TTCCCCTTCTGCCACCCTTGGCTTGGGAGGAACCTCTCCTCCCCCACCTA
CCAACACCTCTTACTTGGCCTCCTTCAAAAATGGGGCCCTTGTCGTCCTT
TCTCGCATGGTGGCCAACCCCTCCATCCGGGCTGCCCTCCTTGCTTTCTT
CCTGGGCTTAATTCCACCAATCAAAGCACTCTTTGTCTCTTCTGCCGATA
GACCCAATCCCCCCTTAGGAGCCTTTTTGGGAGCGATGCAGATTCTCGGA
CAAGCGCAAGTGCCTTGCTCCATGCTAATGCTTTCAGGATCAGGAACGAT
CAGGTATTTGAATGACAAGGCAGCTCAAAACAACGTGGAGACTTCCTTTG
CGTTCTCCCCGAAAGTAATATTTTGTATTATCTTGGGGAGAGTCCTCTTG
TTTCCGTTGGTGGGGTTGTTTTGGTGGTGGGCTGGGTATGGATTAGGTTT
GTTCGTAGGGACGCCTGTGTTGAGCTTGGTCGTGCTGCTGGATGCTGCGG
TACCGACGGCGCAGAATGTTGTGATGCTGATCCTGGTGCATGGGAAGGCG
GAGCATGGACACGCGTTGGCGTATGTGATACTGTGGCAGTACGCACTTTG
TATCCCGATGTTAATTCTGAATGTGACGCTTTACTTGGCTATCATTAGGA
CTGTTTACCCTCTATAGGAAGAAGGATGAGAATGAAGGAGGGAGCATTTA
AAGAAGAAATTATTGTGAGAAAGAGATTTAGGCATGTCATATAGAAGATA
TTCATGATGATGATGGTGATGATGAGGTCATATGGATCTTTTCTGTCGTA
GCTATCCTACAAACCTAGAACTATCGCATG
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protein sequence of jgi.p|Nanoce1779_2|578759

>mRNA_2021-protein ID=mRNA_2021-protein|Name=jgi.p|Nanoce1779_2|578759|organism=Nannochloropsis oceanica|type=polypeptide|length=187bp
MVANPSIRAALLAFFLGLIPPIKALFVSSADRPNPPLGAFLGAMQILGQA
QVPCSMLMLSGSGTIRYLNDKAAQNNVETSFAFSPKVIFCIILGRVLLFP
LVGLFWWWAGYGLGLFVGTPVLSLVVLLDAAVPTAQNVVMLILVHGKAEH
GHALAYVILWQYALCIPMLILNVTLYLAIIRTVYPL*
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mRNA from alignment at scaffold_4:580102..581081+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2021 ID=mRNA_2021|Name=jgi.p|Nanoce1779_2|578759|organism=Nannochloropsis oceanica|type=mRNA|length=980bp|location=Sequence derived from alignment at scaffold_4:580102..581081+ (Nannochloropsis oceanica)
CATCATCACTACCCCCACCACCAATGGAAGCCTTTCAACCCCCTCTGCTC
CTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCCCCTCCTCCTCCTCCT
CCTTCCGGCATCCCCATTTCTACTCTCACCCATTCTGTGCCCCCTCTTTT
TTCCCCTTCTGCCACCCTTGGCTTGGGAGGAACCTCTCCTCCCCCACCTA
CCAACACCTCTTACTTGGCCTCCTTCAAAAATGGGGCCCTTGTCGTCCTT
TCTCGCATGGTGGCCAACCCCTCCATCCGGGCTGCCCTCCTTGCTTTCTT
CCTGGGCTTAATTCCACCAATCAAAGCACTCTTTGTCTCTTCTGCCGATA
GACCCAATCCCCCCTTAGGAGCCTTTTTGGGAGCGATGCAGATTCTCGGA
CAAGCGCAAGTGCCTTGCTCCATGCTAATGCTTTCAGGATCAGGAACGAT
CAGGTATTTGAATGACAAGGCAGCTCAAAACAACGTGGAGACTTCCTTTG
CGTTCTCCCCGAAAGTAATATTTTGTATTATCTTGGGGAGAGTCCTCTTG
TTTCCGTTGGTGGGGTTGTTTTGGTGGTGGGCTGGGTATGGATTAGGTTT
GTTCGTAGGGACGCCTGTGTTGAGCTTGGTCGTGCTGCTGGATGCTGCGG
TACCGACGGCGCAGAATGTTGTGATGCTGATCCTGGTGCATGGGAAGGCG
GAGCATGGACACGCGTTGGCGTATGTGATACTGTGGCAGTACGCACTTTG
TATCCCGATGTTAATTCTGAATGTGACGCTTTACTTGGCTATCATTAGGA
CTGTTTACCCTCTATAGGAAGAAGGATGAGAATGAAGGAGGGAGCATTTA
AAGAAGAAATTATTGTGAGAAAGAGATTTAGGCATGTCATATAGAAGATA
TTCATGATGATGATGGTGATGATGAGGTCATATGGATCTTTTCTGTCGTA
GCTATCCTACAAACCTAGAACTATCGCATG
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Coding sequence (CDS) from alignment at scaffold_4:580102..581081+

>mRNA_2021 ID=mRNA_2021|Name=jgi.p|Nanoce1779_2|578759|organism=Nannochloropsis oceanica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_4:580102..581081+ (Nannochloropsis oceanica)
ATGGTGGCCAACCCCTCCATCCGGGCTGCCCTCCTTGCTTTCTTCCTGGG
CTTAATTCCACCAATCAAAGCACTCTTTGTCTCTTCTGCCGATAGACCCA
ATCCCCCCTTAGGAGCCTTTTTGGGAGCGATGCAGATTCTCGGACAAGCG
CAAGTGCCTTGCTCCATGCTAATGCTTTCAGGATCAGGAACGATCAGGTA
TTTGAATGACAAGGCAGCTCAAAACAACGTGGAGACTTCCTTTGCGTTCT
CCCCGAAAGTAATATTTTGTATTATCTTGGGGAGAGTCCTCTTGTTTCCG
TTGGTGGGGTTGTTTTGGTGGTGGGCTGGGTATGGATTAGGTTTGTTCGT
AGGGACGCCTGTGTTGAGCTTGGTCGTGCTGCTGGATGCTGCGGTACCGA
CGGCGCAGAATGTTGTGATGCTGATCCTGGTGCATGGGAAGGCGGAGCAT
GGACACGCGTTGGCGTATGTGATACTGTGGCAGTACGCACTTTGTATCCC
GATGTTAATTCTGAATGTGACGCTTTACTTGGCTATCATTAGGACTGTTT
ACCCTCTATAG
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Synonyms
Publications