jgi.p|Nanoce1779_2|291585, mRNA_2020 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|291585
Unique NamemRNA_2020
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length567
Alignment locationscaffold_4:578395..579293 +

Link to JBrowse

Properties
Property NameValue
TranscriptId291671
TrackFilteredModels2
ProteinId291585
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:578395..579293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|291585gene_2020Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|291585mRNA_2020-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2020CDS_2020Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2020 ID=mRNA_2020|Name=jgi.p|Nanoce1779_2|291585|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
CACAAGACCCTCAGGTCGCAAGGGAGAATAACGATCAACAGCAGGAACTG
CAGCAGGAGCGAACGGCAACGCCGTGGAACCCAGCATCAATATGTTGATC
GAGATGCCCACATGGGAACAACTGCAAGAATCATTGTCCGCATCGGCAAA
TGCCACGAGCAAAATCGTCTTCTTGGTCCTTATAGGCGTCGCAGCCACTG
CGCATGGTGTCTTCAACGACCAAGGCGTTTCCGACCTGGGCCGTCTCGTT
TATCACGTCACCCTTCCCGCCCTCCTATTCGTCAATATTATCAGCGAAGT
GACATTGGCTCGCTTGCTCGTCCTCTGGAAACTTCCGGCAATGGCCCTGT
TACATGTGTCCTCTGGTTATCTCCTTGCGAAGTGCCTGACTTCTTTTTTC
CGGATTCGGGGGATAGGGAACAAGGCAGTGACATTGTCCCTAATGTTTGG
AAATGTGGGCTCGCTTGCAATTGCTGTGGTTGATACATTGTGTGCGGATG
AGCCTTTAGCATCCGAGGTGGGGCCGACATGAAATTGTGAAGGATGGGAC
GGGCGACGAAGACGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|291585

>mRNA_2020-protein ID=mRNA_2020-protein|Name=jgi.p|Nanoce1779_2|291585|organism=Nannochloropsis oceanica|type=polypeptide|length=147bp
MLIEMPTWEQLQESLSASANATSKIVFLVLIGVAATAHGVFNDQGVSDLG
RLVYHVTLPALLFVNIISEVTLARLLVLWKLPAMALLHVSSGYLLAKCLT
SFFRIRGIGNKAVTLSLMFGNVGSLAIAVVDTLCADEPLASEVGPT*
back to top

mRNA from alignment at scaffold_4:578395..579293+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2020 ID=mRNA_2020|Name=jgi.p|Nanoce1779_2|291585|organism=Nannochloropsis oceanica|type=mRNA|length=899bp|location=Sequence derived from alignment at scaffold_4:578395..579293+ (Nannochloropsis oceanica)
CACAAGACCCTCAGGTCGCAAGGGAGAATAACGATCAACAGCAGGAACTG
CAGCAGGAGCGAACGGCAACGCCGTGGAACCCAGCATCAATATGTTGATC
GAGATGCCCACATGGGAACAACTGCAAGAATCATTGTCCGCATCGGCAAA
TGCCACGAGCAAAATCGTCTTCTTGGTCCTTATAGGCGTCGCAGCCACTG
CGCATGGTACGTTGTATCAGTAGGAGACTGGGAAGAGGGGTCAGGAAGGA
GCCGCGTACGCTTAGTTTGAGCATGCGGGTTTGAGGGAGGGTCAGGTAGT
GGAAATGATGTAGCGGCCAAGGCCTCCCGCATGCTGGTGTTCAGAACGAT
ATAAATGTGCGCTCCTCTTTGCTTCCATCTTTGCGCTCGCTTTCTAATGT
GAATAGATCCTCTGCACGTTTTCACCGTCTCAACTTCTCCCTCCACTCCC
TTCCGCTCCCACAGGTGTCTTCAACGACCAAGGCGTTTCCGACCTGGGCC
GTCTCGTTTATCACGTCACCCTTCCCGCCCTCCTATTCGTCAATATTATC
AGCGAAGTGACATTGGCTCGCTTGCTCGTCCTCTGGAAACTTCCGGCAAT
GGCCCTGTTACATGTGTCCTCTGGTTATCTCCTTGCGAAGTGCCTGACTT
CTTTTTTCCGGATTCGGGGGATAGGGAACAAGGCAGTGACATTGTCCCTA
ATGTTTGGAAATGTGGGCTCGCTTGCAATTGCTGTGGTTGATACATTGTG
TGCGGATGAGCCTTTAGCATCCGAGGTGGGGCCGACATGTGCGTTGAGAG
GGGTGGAGTACATCTCGTTTTATTTGATCACACAGACAATATTAATGTTC
ACGTGGGCGGAGGAAATTGTGAAGGATGGGACGGGCGACGAAGACGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_4:578395..579293+

>mRNA_2020 ID=mRNA_2020|Name=jgi.p|Nanoce1779_2|291585|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_4:578395..579293+ (Nannochloropsis oceanica)
ATGTTGATCGAGATGCCCACATGGGAACAACTGCAAGAATCATTGTCCGC
ATCGGCAAATGCCACGAGCAAAATCGTCTTCTTGGTCCTTATAGGCGTCG
CAGCCACTGCGCATGGTGTCTTCAACGACCAAGGCGTTTCCGACCTGGGC
CGTCTCGTTTATCACGTCACCCTTCCCGCCCTCCTATTCGTCAATATTAT
CAGCGAAGTGACATTGGCTCGCTTGCTCGTCCTCTGGAAACTTCCGGCAA
TGGCCCTGTTACATGTGTCCTCTGGTTATCTCCTTGCGAAGTGCCTGACT
TCTTTTTTCCGGATTCGGGGGATAGGGAACAAGGCAGTGACATTGTCCCT
AATGTTTGGAAATGTGGGCTCGCTTGCAATTGCTGTGGTTGATACATTGT
GTGCGGATGAGCCTTTAGCATCCGAGGTGGGGCCGACATGAATGTTGATC
GAGATGCCCACATGGGAACAACTGCAAGAATCATTGTCCGCATCGGCAAA
TGCCACGAGCAAAATCGTCTTCTTGGTCCTTATAGGCGTCGCAGCCACTG
CGCATGGTGTCTTCAACGACCAAGGCGTTTCCGACCTGGGCCGTCTCGTT
TATCACGTCACCCTTCCCGCCCTCCTATTCGTCAATATTATCAGCGAAGT
GACATTGGCTCGCTTGCTCGTCCTCTGGAAACTTCCGGCAATGGCCCTGT
TACATGTGTCCTCTGGTTATCTCCTTGCGAAGTGCCTGACTTCTTTTTTC
CGGATTCGGGGGATAGGGAACAAGGCAGTGACATTGTCCCTAATGTTTGG
AAATGTGGGCTCGCTTGCAATTGCTGTGGTTGATACATTGTGTGCGGATG
AGCCTTTAGCATCCGAGGTGGGGCCGACATGAATGTTGATCGAGATGCCC
ACATGGGAACAACTGCAAGAATCATTGTCCGCATCGGCAAATGCCACGAG
CAAAATCGTCTTCTTGGTCCTTATAGGCGTCGCAGCCACTGCGCATGGTG
TCTTCAACGACCAAGGCGTTTCCGACCTGGGCCGTCTCGTTTATCACGTC
ACCCTTCCCGCCCTCCTATTCGTCAATATTATCAGCGAAGTGACATTGGC
TCGCTTGCTCGTCCTCTGGAAACTTCCGGCAATGGCCCTGTTACATGTGT
CCTCTGGTTATCTCCTTGCGAAGTGCCTGACTTCTTTTTTCCGGATTCGG
GGGATAGGGAACAAGGCAGTGACATTGTCCCTAATGTTTGGAAATGTGGG
CTCGCTTGCAATTGCTGTGGTTGATACATTGTGTGCGGATGAGCCTTTAG
CATCCGAGGTGGGGCCGACATGA
back to top
Synonyms
Publications