jgi.p|Nanoce1779_2|659829, mRNA_2017 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|659829
Unique Name	mRNA_2017
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1290
Alignment location	scaffold_4:572882..574258 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	659915
Track	FilteredModels2
ProteinId	659829

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:572882..574258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659829	gene_2017	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|659829	mRNA_2017-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2017	CDS_2017	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:572882..574258+
coding sequence from alignment at scaffold_4:572882..574258+

mRNA sequence

>mRNA_2017 ID=mRNA_2017|Name=jgi.p|Nanoce1779_2|659829|organism=Nannochloropsis oceanica|type=mRNA|length=1290bp
TAACGCCCGCATCATTCTCCTCCGCCATCCTGATTTGAAGTATCACAGAC
ACTCATCCCTCGCGACGCAATCCCCCATACGACCCTCAGGTTGCGAGGGA
GAACAAGAAGAAGCAGCATCAGTAGCAACAGCACCGGCAACGCGGTTGGA
CCCAGTAGTATTATGTTATGCGTCGCAGCCACTGTCCAATTTCTTCTCCC
CATGAGCGTCGCAGCCACTCTTCATAACATATATCTCTCGCATGGAACCA
AGATCAACCAAACCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATA
CGTCCCTGCCCTAGTTACATCATTATAGGCGCACAGAAGTGTGGAACCAC
GTCCTTGTATGAATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACA
GGCGGGAGACTCATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTG
ACTTGGCGGGAGCACCGGGACACGTATCACAAGTTTTTCAACAAGACGTT
TCCAGACGAGAACTCATCACGCATAATTGGGGAATCATCGCCGAGCTATA
TGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAG
GCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCA
GTTCCAGATGCTCATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAA
AAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAG
AAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTA
CGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCA
GCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGG
ATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGA
GGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTG
CGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATGCCAAGAAT
ACTAGGCAGTACGAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGC
ATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGA
GGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAAT
GGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAA
TGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA

protein sequence of jgi.p|Nanoce1779_2|659829

>mRNA_2017-protein ID=mRNA_2017-protein|Name=jgi.p|Nanoce1779_2|659829|organism=Nannochloropsis oceanica|type=polypeptide|length=376bp
MLCVAATVQFLLPMSVAATLHNIYLSHGTKINQTRRSINLESERGIRPCP
SYIIIGAQKCGTTSLYEYLCQHPLVLRANRRETHYLDRRWRREEGLTWRE
HRDTYHKFFNKTFPDENSSRIIGESSPSYMLYSDVVVPRVRELAPEAKML
VMLRCPVARAYSQFQMLIDTEGEGTPEQKKARGTLWKGKSFEEVVEKELE
ELEACGVTPDMTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEF
GGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKNTRQY
EQLDEKMQARLAAFYAPFNDKLFEMLARPRGMAGWAGMKEEGGVRNGQVL
SVDEAKSEQLRTNVRTEQNMRRKRE*

mRNA from alignment at scaffold_4:572882..574258+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2017 ID=mRNA_2017|Name=jgi.p|Nanoce1779_2|659829|organism=Nannochloropsis oceanica|type=mRNA|length=1377bp|location=Sequence derived from alignment at scaffold_4:572882..574258+ (Nannochloropsis oceanica)
TAACGCCCGCATCATTCTCCTCCGCCATCCTGATTTGAAGTATCACAGAC
ACTCATCCCTCGCGACGCAATCCCCCATACGACCCTCAGGTTGCGAGGGA
GAACAAGAAGAAGCAGCATCAGTAGCAACAGCACCGGCAACGCGGTTGGA
CCCAGTAGTATTATGTTATGTAAGATGCCCACACGGGAACAACTGCGAGA
AAAAATGTACGCCTCGCCAAATGTCACAAGCAAAATCATGTTCTTGGTCC
TCATAGGCGTCGCAGCCACTGTCCAATTTCTTCTCCCCATGAGCGTCGCA
GCCACTCTTCATAACATATATCTCTCGCATGGAACCAAGATCAACCAAAC
CCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATACGTCCCTGCCCTA
GTTACATCATTATAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATGAA
TATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACAGGCGGGAGACTCA
TTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGAGC
ACCGGGACACGTATCACAAGTTTTTCAACAAGACGTTTCCAGACGAGAAC
TCATCACGCATAATTGGGGAATCATCGCCGAGCTATATGTTGTATAGCGA
CGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCTGG
TGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCAGTTCCAGATGCTC
ATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAAAAGCTAGGGGAAC
GCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGTTGGAGG
AGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTACGAAGAGTTTAAG
ACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCAGCCATTCGTTGCT
AGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGGATGGCTGAATTTG
GGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGAGGAGATGAGGACG
GGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTGCGTTCTTGGGGCT
GCCTCCTCATGACATAATTGATACAGATGCCAAGAATACTAGGCAGTACG
AACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGCATTTTACGCGCCG
TTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGAGGGGGATGGCGGG
GTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAATGGACAGGTACTGT
CCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAATGTAAGGACTGAA
CAAAATATGCGGCGAAAGCGGGAATAA

Coding sequence (CDS) from alignment at scaffold_4:572882..574258+

>mRNA_2017 ID=mRNA_2017|Name=jgi.p|Nanoce1779_2|659829|organism=Nannochloropsis oceanica|type=CDS|length=2256bp|location=Sequence derived from alignment at scaffold_4:572882..574258+ (Nannochloropsis oceanica)
ATGTTATGCGTCGCAGCCACTGTCCAATTTCTTCTCCCCATGAGCGTCGC
AGCCACTCTTCATAACATATATCTCTCGCATGGAACCAAGATCAACCAAA
CCCGCCGCTCGATCAACCTGGAGTCGGAACGAGGAATACGTCCCTGCCCT
AGTTACATCATTATAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATGA
ATATCTGTGTCAGCATCCCTTGGTGTTGAGGGCAAACAGGCGGGAGACTC
ATTACCTGGATCGGCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGAG
CACCGGGACACGTATCACAAGTTTTTCAACAAGACGTTTCCAGACGAGAA
CTCATCACGCATAATTGGGGAATCATCGCCGAGCTATATGTTGTATAGCG
ACGTGGTGGTGCCGAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCTG
GTGATGCTCCGTTGTCCTGTGGCGAGGGCCTACAGTCAGTTCCAGATGCT
CATCGATACGGAAGGTGAAGGGACCCCAGAGCAGAAAAAAGCTAGGGGAA
CGCTCTGGAAAGGGAAGTCGTTCGAGGAAGTGGTCGAGAAGGAGTTGGAG
GAGCTAGAGGCATGCGGAGTGACGCCGGATATGACGTACGAAGAGTTTAA
GACACGGTTTTTAGCTTCGAGACCACTTGGGCATGGCAGCCATTCGTTGC
TAGGGAGAGGGCTGTATGCCTTGCAGTTGCAGCCGTGGATGGCTGAATTT
GGGGGAGACAAGGGTCAGTTGATGGTATTGTTTACCGAGGAGATGAGGAC
GGGGGAGGCGGCGCAGACACAGGTCGGCAAGGTGTTTGCGTTCTTGGGGC
TGCCTCCTCATGACATAATTGATACAGATGCCAAGAATACTAGGCAGTAC
GAACAGTTGGACGAAAAAATGCAAGCGAGGTTGGCAGCATTTTACGCGCC
GTTTAATGACAAGTTGTTTGAGATGTTGGCGCGACCGAGGGGGATGGCGG
GGTGGGCGGGGATGAAAGAGGAGGGAGGGGTTCGCAATGGACAGGTACTG
TCCGTAGACGAGGCGAAGTCGGAGCAGCTTCGTACAAATGTAAGGACTGA
ACAAAATATGCGGCGAAAGCGGGAATAAATGTTATGCGTCGCAGCCACTG
TCCAATTTCTTCTCCCCATGAGCGTCGCAGCCACTCTTCATAACATATAT
CTCTCGCATGGAACCAAGATCAACCAAACCCGCCGCTCGATCAACCTGGA
GTCGGAACGAGGAATACGTCCCTGCCCTAGTTACATCATTATAGGCGCAC
AGAAGTGTGGAACCACGTCCTTGTATGAATATCTGTGTCAGCATCCCTTG
GTGTTGAGGGCAAACAGGCGGGAGACTCATTACCTGGATCGGCGGTGGCG
GAGGGAGGAAGGGTTGACTTGGCGGGAGCACCGGGACACGTATCACAAGT
TTTTCAACAAGACGTTTCCAGACGAGAACTCATCACGCATAATTGGGGAA
TCATCGCCGAGCTATATGTTGTATAGCGACGTGGTGGTGCCGAGGGTAAG
GGAGCTGGCGCCCGAGGCCAAGATGCTGGTGATGCTCCGTTGTCCTGTGG
CGAGGGCCTACAGTCAGTTCCAGATGCTCATCGATACGGAAGGTGAAGGG
ACCCCAGAGCAGAAAAAAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGTT
CGAGGAAGTGGTCGAGAAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTGA
CGCCGGATATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGA
CCACTTGGGCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTT
GCAGTTGCAGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGA
TGGTATTGTTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAG
GTCGGCAAGGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGA
TACAGATGCCAAGAATACTAGGCAGTACGAACAGTTGGACGAAAAAATGC
AAGCGAGGTTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAG
ATGTTGGCGCGACCGAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGA
GGGAGGGGTTCGCAATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGG
AGCAGCTTCGTACAAATGTAAGGACTGAACAAAATATGCGGCGAAAGCGG
GAATAA

Synonyms

Publications