Properties
| Property Name | Value |
|---|
| TranscriptId | 578830 |
| Track | FilteredModels2 |
| ProteinId | 578744 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:568551..572226 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2015 ID=mRNA_2015|Name=jgi.p|Nanoce1779_2|578744|organism=Nannochloropsis oceanica|type=mRNA|length=3430bp
ACAGGCATTAAAAGCACGTCATGGAAGTGGACGAGTCAGTTCAGCGGCTG
TTGGCCGGGTGTGGGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGA
GGACAGGGAGGATGGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTG
ACGAGGAGGACGAGGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTG
GCAACCAACCTCAAGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGG
AAATCTCAAGACTTACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCT
GTCGCATTATTAAGACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCC
TATGAGGGCGACATACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGA
ACGCTGCAAGTTGGAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAG
CCGTGGATTTGTACCATTATCTGACATATGCTTACTTCCGTCAGACCAGC
TTAATTATCTTTCGCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGA
GGCCCACGCGCCCTCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTA
TCTTTTACATCATGTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAA
AAGATGGTAGCAATCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGC
CATGATCTCAGATGAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCT
CCTTGGAGAACCACAAGCCCCTGGCAACAGTGGCAGCGGCTATTACTGGG
GCGAGGGCTATTACTTCATCTGTTGATGTGGTATGTGGAGATGGAGAAGG
GGGGCAGCGGCAGCAGCAGGGGAATGGAGGCGTGAGTGGTCGTCATCTGT
CTAGGAACCAGCGTCGAGAGGAGGAGCGGGCAAAACATCAACAAGGGCAG
CAGGAGTTGCGGCAACGGCAGCAGCTCAAACAGCAGCAGCAGAAAAGAAA
TGAAGGGTGTGCAGGGGAGGGACCGATGCAGCGACAGGAACAGGAAAAGC
AATTGCAGACAGAGGCGGAAGTAGTGAGGAGGTTGGACGAGGAAGGGCAG
CAGGCAGAAATTGATGTGCGAGCAGCACCGGCAGAAGGCGAAATAGGAGT
GATATTAACAAAGGAAGGTGGTAGGAGTTCCACGCCGGATGACCATGCAA
AGCAGGTGTCGCCAACGGAAGAGGATGATGTTGTAGGAAGAGGAACAGAA
AGAGTGGAGGAGGCAATCACGGCGTAGGACCGTGGAAGTAAAAAAGCAGC
TCATCAATATTTTTAAAACAGCCCTATACCAAAACAACATAACACCTCAT
AGCTCAGCTATTTGCACAGCACAGTGTGTTCTACTCGCAAGCGGGCCTCG
GTTGGTTACATTTTCAGCGGTCCAGTGCTGGCCCATCTCATTTGAGAGCT
CTAAATTGAACACCCACGATTTAATCAAGGGCACCACAGGCTTGGCGGTG
TTGCCGATGTAGTGGACAGGATCTCCAAGCCTCTCTTCATGTAAATCGTG
CTGGATGCGCGGTTTGCTGGAGGCAACCCCCCTCATGACAACCCCTCTCC
CTCTAGAGAGATGAGGCGACGAGTGGAGATGAATGCCGCAGCCTGCCATG
TGGATTTTTGACCGCACACTAACGAGCGAGCGTACGCACCCAAATCCAAC
CTTCACACAGCCGCAAGTGATGGCAACCCGCACCGCATCACCATCGCCTG
CGGCAGCTGCTGCCAAGGCATATACTGCTTCTCGCTCCAACAATACCACT
GCGCCTCCTCGCGCTGTGCTTGCCAACCCTGCTCTTCTGGCCCTCCCACG
CCACATTCCACCAGCTGGCCAGGTCGGTCTAGGGCACAAAGGTGTCCCCA
TTAACCAGCTGCCGGAGGAGGCATGGGGCCACGTGCCTTTGTGTCGAACG
CGGGGCCAAGTCTGCGTGGCAGGCCTGAAACGCAAATTAGCAGAGGGCGG
TCCCAAGCTGTGGCAAGAGGAAGAAGCCCGAAAGAGTAACGTGGGCGTGA
TCCGCCCCAGCCACGACGCCTGGGGAATAGGAAAGATTGTCTTTGTCTAC
TGCGATGATTTTCTACGACGGTGCTTCGAGATGCCATGGATGCACGATCC
TGAGTGGCGCGCGCTCCTACTCCCCATCTTCGATGCCCTCGGCGTGCCCC
CCCACAAAATCGTCCGTTGCCTCCTTGCGTCCATGCCTCCCGGGATCGCC
ATTCCTCCACATCATGACACGGGCTACTGGGTGCATTACACCCATCGGAT
TCACCTTCCCGTTATCACCGACCCTGCCCACATCGCCTTTCGTGTCGGCC
CCTCCGATGCGCATCTTCAACGCTTCGACCTGGCTGAAGGCCACCTCATC
GAGCTTAACAACCAGGCGAAACACAGCGTGGACAACTGCTGGGGGCAACA
CCGGGTACACTTAATAATGGACTACATCGAAGGAAATTCGGTAAGTATCG
AACGTACCCTCCTTTCGCCCGGCACTAAGATCAACCAAACCCGCCGCTCA
ATCGACCTGGAGTCGGAACGAGGAATACGTCCCTGCCCTAGTTACATCAT
TATAGGCGCACAGAAGTGTGGAACCACGTCCTTGTATGAATATCTGTGTC
AGCATCCCTTGGTGTTGAGGGCAAGGCGGAGGGAGACTCATTACCTGGAT
TGGCGGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGAGCACCGGGACAC
GTATCACAAGTTCTTCCACAAGGCCATATTGGATGAAAACCCGTCGTGTC
TTACTGGAGAATCGACGCCAAGCTATATGCTGCATAGCGACGTGGTGGTG
CCGAGGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCTGGTGATGCTCCG
TTGTCCTGTGGCGAGGGCCTACAGTCAGTACCAAATGGTGATTGACCCGG
ATGGCACCCCAGAGCAGAAAAAAGCTAGGGGAACGCTCTGGAAAGGGAAG
TCGTTCGAGGAAGTGGTCGAGAAGGAGTTGGAGGAGCTAGAGGCATGCGG
AGTGACGCCGGATATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTT
CGAGACCACTTGGGCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTAT
GCCTTGCAGTTGCAGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCA
GTTGATGGTATTGTTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGA
CACAGGTCGGCAAGGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATA
ATTGATACAGATGCCAAGAATACTAGGCAGTACGAACAGTTGGACGAAAA
AATGCAAGCGAGGTTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGT
TTGAGATGTTGGCGCGACCGAGGGGGATGG back to topprotein sequence of jgi.p|Nanoce1779_2|578744 >mRNA_2015-protein ID=mRNA_2015-protein|Name=jgi.p|Nanoce1779_2|578744|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MEVDESVQRLLAGCGRLCADGGDEDVEDREDGGPTKRPRNEEFDEEDEDS
GQPLVAADDVATNLKVWARTLQRPPKGNLKTYSEGLWRPDKQLCRIIKTR
GNDLRSMGFPYEGDIHLYPEETLFLVERCKLEVGNLTTPELYEAVDLYHY
LTYAYFRQTSLIIFRADPSCPVGVAFEAHAPSSQFKKTAQNYPIFYIMFG
GTRAPVPTDEKMVAIFEWAKGVPVKYAMISDEGGVFAVNLAHSSLENHKP
LATVAAAITGARAITSSVDVVCGDGEGGQRQQQGNGGVSGRHLSRNQRRE
EERAKHQQGQQELRQRQQLKQQQQKRNEGCAGEGPMQRQEQEKQLQTEAE
VVRRLDEEGQQAEIDVRAAPAEGEIGVILTKEGGRSSTPDDHAKQVSPTE
EDDVVGRGTERVEEAITA* back to topmRNA from alignment at scaffold_4:568551..572226+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2015 ID=mRNA_2015|Name=jgi.p|Nanoce1779_2|578744|organism=Nannochloropsis oceanica|type=mRNA|length=3676bp|location=Sequence derived from alignment at scaffold_4:568551..572226+ (Nannochloropsis oceanica)
ACAGGCATTAAAAGCACGTCATGGAAGTGGACGAGTCAGTTCAGCGGCTG
TTGGCCGGGTGTGGGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGA
GGACAGGGAGGATGGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTG
ACGAGGAGGACGAGGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTG
GCAACCAACCTCAAGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGG
AAATCTCAAGGTACGTGGGTACTTTTGATGCTTTGGCTTGGCGCAGGGGG
AGGGGAGGAGGAAAGTGTGCGGAGGGGGGGGGCTTGTGGACTCCGAGGCA
ATGCAGTTTACAGACATGGAGTTATGAATTGTTAAAAATGTTGCCTCTTG
AATACCGATACCTTTCCCTTTTACTTGCCCGGTCAGCGCTCGATACAAGC
TGGTCAATGAGATATCCGACAAGCGTCTCATTCACCCTCACTTCTCCAAC
TTTTAGACTTACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCG
CATTATTAAGACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCCTATG
AGGGCGACATACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGAACGC
TGCAAGTTGGAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAGCCGT
GGATTTGTACCATTATCTGACATATGCTTACTTCCGTCAGACCAGCTTAA
TTATCTTTCGCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCC
CACGCGCCCTCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTATCTT
TTACATCATGTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAAAAGA
TGGTAGCAATCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATG
ATCTCAGATGAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTT
GGAGAACCACAAGCCCCTGGCAACAGTGGCAGCGGCTATTACTGGGGCGA
GGGCTATTACTTCATCTGTTGATGTGGTATGTGGAGATGGAGAAGGGGGG
CAGCGGCAGCAGCAGGGGAATGGAGGCGTGAGTGGTCGTCATCTGTCTAG
GAACCAGCGTCGAGAGGAGGAGCGGGCAAAACATCAACAAGGGCAGCAGG
AGTTGCGGCAACGGCAGCAGCTCAAACAGCAGCAGCAGAAAAGAAATGAA
GGGTGTGCAGGGGAGGGACCGATGCAGCGACAGGAACAGGAAAAGCAATT
GCAGACAGAGGCGGAAGTAGTGAGGAGGTTGGACGAGGAAGGGCAGCAGG
CAGAAATTGATGTGCGAGCAGCACCGGCAGAAGGCGAAATAGGAGTGATA
TTAACAAAGGAAGGTGGTAGGAGTTCCACGCCGGATGACCATGCAAAGCA
GGTGTCGCCAACGGAAGAGGATGATGTTGTAGGAAGAGGAACAGAAAGAG
TGGAGGAGGCAATCACGGCGTAGGACCGTGGAAGTAAAAAAGCAGCTCAT
CAATATTTTTAAAACAGCCCTATACCAAAACAACATAACACCTCATAGCT
CAGCTATTTGCACAGCACAGTGTGTTCTACTCGCAAGCGGGCCTCGGTTG
GTTACATTTTCAGCGGTCCAGTGCTGGCCCATCTCATTTGAGAGCTCTAA
ATTGAACACCCACGATTTAATCAAGGGCACCACAGGCTTGGCGGTGTTGC
CGATGTAGTGGACAGGATCTCCAAGCCTCTCTTCATGTAAATCGTGCTGG
ATGCGCGGTTTGCTGGAGGCAACCCCCCTCATGACAACCCCTCTCCCTCT
AGAGAGATGAGGCGACGAGTGGAGATGAATGCCGCAGCCTGCCATGTGGA
TTTTTGACCGCACACTAACGAGCGAGCGTACGCACCCAAATCCAACCTTC
ACACAGCCGCAAGTGATGGCAACCCGCACCGCATCACCATCGCCTGCGGC
AGCTGCTGCCAAGGCATATACTGCTTCTCGCTCCAACAATACCACTGCGC
CTCCTCGCGCTGTGCTTGCCAACCCTGCTCTTCTGGCCCTCCCACGCCAC
ATTCCACCAGCTGGCCAGGTCGGTCTAGGGCACAAAGGTGTCCCCATTAA
CCAGCTGCCGGAGGAGGCATGGGGCCACGTGCCTTTGTGTCGAACGCGGG
GCCAAGTCTGCGTGGCAGGCCTGAAACGCAAATTAGCAGAGGGCGGTCCC
AAGCTGTGGCAAGAGGAAGAAGCCCGAAAGAGTAACGTGGGCGTGATCCG
CCCCAGCCACGACGCCTGGGGAATAGGAAAGATTGTCTTTGTCTACTGCG
ATGATTTTCTACGACGGTGCTTCGAGATGCCATGGATGCACGATCCTGAG
TGGCGCGCGCTCCTACTCCCCATCTTCGATGCCCTCGGCGTGCCCCCCCA
CAAAATCGTCCGTTGCCTCCTTGCGTCCATGCCTCCCGGGATCGCCATTC
CTCCACATCATGACACGGGCTACTGGGTGCATTACACCCATCGGATTCAC
CTTCCCGTTATCACCGACCCTGCCCACATCGCCTTTCGTGTCGGCCCCTC
CGATGCGCATCTTCAACGCTTCGACCTGGCTGAAGGCCACCTCATCGAGC
TTAACAACCAGGCGAAACACAGCGTGGACAACTGCTGGGGGCAACACCGG
GTACACTTAATAATGGACTACATCGAAGGAAATTCGGTAAGTATCGAACG
TACCCTCCTTTCGCCCGGCACTAAGATCAACCAAACCCGCCGCTCAATCG
ACCTGGAGTCGGAACGAGGAATACGTCCCTGCCCTAGTTACATCATTATA
GGCGCACAGAAGTGTGGAACCACGTCCTTGTATGAATATCTGTGTCAGCA
TCCCTTGGTGTTGAGGGCAAGGCGGAGGGAGACTCATTACCTGGATTGGC
GGTGGCGGAGGGAGGAAGGGTTGACTTGGCGGGAGCACCGGGACACGTAT
CACAAGTTCTTCCACAAGGCCATATTGGATGAAAACCCGTCGTGTCTTAC
TGGAGAATCGACGCCAAGCTATATGCTGCATAGCGACGTGGTGGTGCCGA
GGGTAAGGGAGCTGGCGCCCGAGGCCAAGATGCTGGTGATGCTCCGTTGT
CCTGTGGCGAGGGCCTACAGTCAGTACCAAATGGTGATTGACCCGGATGG
CACCCCAGAGCAGAAAAAAGCTAGGGGAACGCTCTGGAAAGGGAAGTCGT
TCGAGGAAGTGGTCGAGAAGGAGTTGGAGGAGCTAGAGGCATGCGGAGTG
ACGCCGGATATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAG
ACCACTTGGGCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCT
TGCAGTTGCAGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTG
ATGGTATTGTTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGACACA
GGTCGGCAAGGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAATTG
ATACAGATGCCAAGAATACTAGGCAGTACGAACAGTTGGACGAAAAAATG
CAAGCGAGGTTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTTTGA
GATGTTGGCGCGACCGAGGGGGATGG back to topCoding sequence (CDS) from alignment at scaffold_4:568551..572226+ >mRNA_2015 ID=mRNA_2015|Name=jgi.p|Nanoce1779_2|578744|organism=Nannochloropsis oceanica|type=CDS|length=2514bp|location=Sequence derived from alignment at scaffold_4:568551..572226+ (Nannochloropsis oceanica)
ATGGAAGTGGACGAGTCAGTTCAGCGGCTGTTGGCCGGGTGTGGGCGACT
ATGCGCCGACGGAGGGGACGAGGATGTGGAGGACAGGGAGGATGGCGGGC
CTACCAAGCGGCCTCGCAACGAAGAGTTTGACGAGGAGGACGAGGACAGT
GGACAACCTTTGGTGGCTGCGGACGACGTGGCAACCAACCTCAAGGTATG
GGCACGGACACTGCAGCGTCCGCCCAAGGGAAATCTCAAGACTTACAGCG
AAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCGCATTATTAAGACCCGC
GGAAACGATTTACGGTCCATGGGCTTCCCCTATGAGGGCGACATACACCT
CTACCCGGAGGAAACCCTCTTCCTCGTCGAACGCTGCAAGTTGGAAGTAG
GAAACCTAACCACCCCCGAACTCTACGAAGCCGTGGATTTGTACCATTAT
CTGACATATGCTTACTTCCGTCAGACCAGCTTAATTATCTTTCGCGCGGA
TCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCCCACGCGCCCTCGTCTC
AATTTAAGAAAACCGCGCAGAATTATCCTATCTTTTACATCATGTTCGGA
GGCACCCGTGCCCCAGTCCCGACCGACGAAAAGATGGTAGCAATCTTTGA
ATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATGATCTCAGATGAAGGAG
GGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTTGGAGAACCACAAGCCC
CTGGCAACAGTGGCAGCGGCTATTACTGGGGCGAGGGCTATTACTTCATC
TGTTGATGTGGTATGTGGAGATGGAGAAGGGGGGCAGCGGCAGCAGCAGG
GGAATGGAGGCGTGAGTGGTCGTCATCTGTCTAGGAACCAGCGTCGAGAG
GAGGAGCGGGCAAAACATCAACAAGGGCAGCAGGAGTTGCGGCAACGGCA
GCAGCTCAAACAGCAGCAGCAGAAAAGAAATGAAGGGTGTGCAGGGGAGG
GACCGATGCAGCGACAGGAACAGGAAAAGCAATTGCAGACAGAGGCGGAA
GTAGTGAGGAGGTTGGACGAGGAAGGGCAGCAGGCAGAAATTGATGTGCG
AGCAGCACCGGCAGAAGGCGAAATAGGAGTGATATTAACAAAGGAAGGTG
GTAGGAGTTCCACGCCGGATGACCATGCAAAGCAGGTGTCGCCAACGGAA
GAGGATGATGTTGTAGGAAGAGGAACAGAAAGAGTGGAGGAGGCAATCAC
GGCGTAGATGGAAGTGGACGAGTCAGTTCAGCGGCTGTTGGCCGGGTGTG
GGCGACTATGCGCCGACGGAGGGGACGAGGATGTGGAGGACAGGGAGGAT
GGCGGGCCTACCAAGCGGCCTCGCAACGAAGAGTTTGACGAGGAGGACGA
GGACAGTGGACAACCTTTGGTGGCTGCGGACGACGTGGCAACCAACCTCA
AGGTATGGGCACGGACACTGCAGCGTCCGCCCAAGGGAAATCTCAAGACT
TACAGCGAAGGCCTGTGGCGCCCCGACAAGCAGCTCTGTCGCATTATTAA
GACCCGCGGAAACGATTTACGGTCCATGGGCTTCCCCTATGAGGGCGACA
TACACCTCTACCCGGAGGAAACCCTCTTCCTCGTCGAACGCTGCAAGTTG
GAAGTAGGAAACCTAACCACCCCCGAACTCTACGAAGCCGTGGATTTGTA
CCATTATCTGACATATGCTTACTTCCGTCAGACCAGCTTAATTATCTTTC
GCGCGGATCCCTCCTGTCCTGTAGGAGTGGCCTTTGAGGCCCACGCGCCC
TCGTCTCAATTTAAGAAAACCGCGCAGAATTATCCTATCTTTTACATCAT
GTTCGGAGGCACCCGTGCCCCAGTCCCGACCGACGAAAAGATGGTAGCAA
TCTTTGAATGGGCCAAGGGTGTGCCTGTTAAGTACGCCATGATCTCAGAT
GAAGGAGGGGTTTTTGCTGTAAATCTAGCGCATAGCTCCTTGGAGAACCA
CAAGCCCCTGGCAACAGTGGCAGCGGCTATTACTGGGGCGAGGGCTATTA
CTTCATCTGTTGATGTGGTATGTGGAGATGGAGAAGGGGGGCAGCGGCAG
CAGCAGGGGAATGGAGGCGTGAGTGGTCGTCATCTGTCTAGGAACCAGCG
TCGAGAGGAGGAGCGGGCAAAACATCAACAAGGGCAGCAGGAGTTGCGGC
AACGGCAGCAGCTCAAACAGCAGCAGCAGAAAAGAAATGAAGGGTGTGCA
GGGGAGGGACCGATGCAGCGACAGGAACAGGAAAAGCAATTGCAGACAGA
GGCGGAAGTAGTGAGGAGGTTGGACGAGGAAGGGCAGCAGGCAGAAATTG
ATGTGCGAGCAGCACCGGCAGAAGGCGAAATAGGAGTGATATTAACAAAG
GAAGGTGGTAGGAGTTCCACGCCGGATGACCATGCAAAGCAGGTGTCGCC
AACGGAAGAGGATGATGTTGTAGGAAGAGGAACAGAAAGAGTGGAGGAGG
CAATCACGGCGTAG back to top
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