jgi.p|Nanoce1779_2|659824, mRNA_2014 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|659824
Unique NamemRNA_2014
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1435
Alignment locationscaffold_4:567012..568520 -

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Properties
Property NameValue
TranscriptId659910
TrackFilteredModels2
ProteinId659824
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:567012..568520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659824gene_2014Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|659824mRNA_2014-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2014CDS_2014Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2014 ID=mRNA_2014|Name=jgi.p|Nanoce1779_2|659824|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp
TTAGTGAACAGGCCTATAAAATGAGGGGTTCACACGAGGATGGAGGACTA
GCTTGCTGATGGGCATTTCATTGATGATTTATTCTTTGTCGGCAACCACA
GGGACTTCTTGACAAAGTTCCCAACCATACCGACAGGTAGAAAAGGAACT
TATGCAGCCGGCCCCGCTAGTCTGCTAATTAGAAGACCGTATCAGCGCTT
TGCTTGGTGATTTTTCGCGGGCAGCCATGTTTCCGACCTCCCCGATACCT
CCCCATGGACTCTGAGTCGACGGTCGATATTGCATCCCCCACCCACACAG
CATGTTCACAGGTCTGGCCAGCAGCAGGAGACGGGAGCGTGTCCTTCTGG
GTCTCGATCAGGCCTTTGCTCCCTCTCTCGCGACGGCATCATCGTCTCGA
AATACGGTGGCGGGAACAGAGTCCGTAGGAGCAGCAGCAGGCCAAGCAGG
AGGCACGACCGCCAGCAGTAACAACGCCTTGTACGCAGAATTGCCGACAC
AGATATCGACGATTGACATACGATTACGCAGTGATAAGACGGCCACTCCC
ACCACTGTCGAAGGCGCTTTGCAAGACCTTCTGTTGCGCAACACCAAAGA
CCTACAACTCAAAGGGAAAACCGTTACTTTAGACAACGTGCGTGGACAGA
AAGAACATCAACAGAAGGAGGTCCGCCTGCGTCGGCAGCTGCTGAGAGGA
CGGACACGTTTCTCGGTCCGTATTGTAGAGGAAGGAGGAAAAACTGCAAC
AACGGGCATAGAAGGAAATAAGGCTGATAACGATAATGATGACACATTAA
GCAACAATAGAAAAAGGAAGAGGAAGAGATGGGTGGCTTCTCCTCAAGAT
TACGTGGCGTTGGAAGGAGCCTGGCAAGGGTACATGCAGCAACTATTGGG
CGTACACAAGGAGGAGAAAGAGGAGAAGAAGAAGCAGGAGGATGAAGGGA
GGGAGACAGAGGACCGAGATAGCAACGTCAATGTTGGAGCTGTCATGGCA
TCAAGAAGCAGCAGCGCCAAGCCTGCTTTCTCGTCGAAGAGAAGCGCCGA
GAGGAATGTGGTAGGAGCTGACATGCATGGGGCCCCGCTGCGTGTGGTGG
CTTCCAAGTGCCCTTCAGAGGTGGGTTTGGAAGGATTAGTTCTACGAGAG
AGCCGTGGGGCCTTGCACATACTGCCAATGTCGGACGGGCATCGACGGGT
GAGAATCGTGCCGAAAGCTGGGCGTCGTTTTCAGGCCACGGTGGGGGTAG
GGAGAAATAAAGCAGGTGGGGGGGGGAGTGCAGGTGGGAGTGAAGGTAAG
AAGGAGTTGAAATTAATTCTGCATGGTAACGGATTGGTGGGTCGAGGGCG
GGCGATTGCGTCACCCTTATTGATAAGGCGGGATAAGGGCGGGGGAGGGG
AAGCGGGGAGGTTGTTGAAAACGACGGAGGTGTAA
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protein sequence of jgi.p|Nanoce1779_2|659824

>mRNA_2014-protein ID=mRNA_2014-protein|Name=jgi.p|Nanoce1779_2|659824|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MFTGLASSRRRERVLLGLDQAFAPSLATASSSRNTVAGTESVGAAAGQAG
GTTASSNNALYAELPTQISTIDIRLRSDKTATPTTVEGALQDLLLRNTKD
LQLKGKTVTLDNVRGQKEHQQKEVRLRRQLLRGRTRFSVRIVEEGGKTAT
TGIEGNKADNDNDDTLSNNRKRKRKRWVASPQDYVALEGAWQGYMQQLLG
VHKEEKEEKKKQEDEGRETEDRDSNVNVGAVMASRSSSAKPAFSSKRSAE
RNVVGADMHGAPLRVVASKCPSEVGLEGLVLRESRGALHILPMSDGHRRV
RIVPKAGRRFQATVGVGRNKAGGGGSAGGSEGKKELKLILHGNGLVGRGR
AIASPLLIRRDKGGGGEAGRLLKTTEV*
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mRNA from alignment at scaffold_4:567012..568520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2014 ID=mRNA_2014|Name=jgi.p|Nanoce1779_2|659824|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp|location=Sequence derived from alignment at scaffold_4:567012..568520- (Nannochloropsis oceanica)
TTAGTGAACAGGCCTATAAAATGAGGGGTTCACACGAGGATGGAGGACTA
GCTTGCTGATGGGCATTTCATTGATGATTTATTCTTTGTCGGCAACCACA
GGGACTTCTTGACAAAGTTCCCAACCATACCGACAGGTAGAAAAGGAACT
TATGCAGCCGGCCCCGCTAGTCTGCTAATTAGAAGACCGTATCAGCGCTT
TGCTTGGTGATTTTTCGCGGGCAGCCATGTTTCCGACCTCCCCGATACCT
CCCCATGGACTCTGAGTCGACGGTCGATATTGCATCCCCCACCCACACAG
CATGTTCACAGGTCTGGCCAGCAGCAGGAGACGGGAGCGTGTCCTTCTGG
GTCTCGATCAGGCCTTTGCTCCCTCTCTCGCGACGGCATCATCGTCTCGA
AATACGGTGGCGGGAACAGAGTCCGTAGGAGCAGCAGCAGGCCAAGCAGG
AGGCACGACCGCCAGCAGTAACAACGCCTTGTACGCAGAATTGCCGACAC
AGATATCGACGATTGACATACGATTACGCAGTGATAAGGTTAGTTTTCTT
TCTGGGGAGACCTCCGACCGCTCAATCAGCTCATTCATCCCCTCCCCCTC
TTTCTCCCCCAGACGGCCACTCCCACCACTGTCGAAGGCGCTTTGCAAGA
CCTTCTGTTGCGCAACACCAAAGACCTACAACTCAAAGGGAAAACCGTTA
CTTTAGACAACGTGCGTGGACAGAAAGAACATCAACAGAAGGAGGTCCGC
CTGCGTCGGCAGCTGCTGAGAGGACGGACACGTTTCTCGGTCCGTATTGT
AGAGGAAGGAGGAAAAACTGCAACAACGGGCATAGAAGGAAATAAGGCTG
ATAACGATAATGATGACACATTAAGCAACAATAGAAAAAGGAAGAGGAAG
AGATGGGTGGCTTCTCCTCAAGATTACGTGGCGTTGGAAGGAGCCTGGCA
AGGGTACATGCAGCAACTATTGGGCGTACACAAGGAGGAGAAAGAGGAGA
AGAAGAAGCAGGAGGATGAAGGGAGGGAGACAGAGGACCGAGATAGCAAC
GTCAATGTTGGAGCTGTCATGGCATCAAGAAGCAGCAGCGCCAAGCCTGC
TTTCTCGTCGAAGAGAAGCGCCGAGAGGAATGTGGTAGGAGCTGACATGC
ATGGGGCCCCGCTGCGTGTGGTGGCTTCCAAGTGCCCTTCAGAGGTGGGT
TTGGAAGGATTAGTTCTACGAGAGAGCCGTGGGGCCTTGCACATACTGCC
AATGTCGGACGGGCATCGACGGGTGAGAATCGTGCCGAAAGCTGGGCGTC
GTTTTCAGGCCACGGTGGGGGTAGGGAGAAATAAAGCAGGTGGGGGGGGG
AGTGCAGGTGGGAGTGAAGGTAAGAAGGAGTTGAAATTAATTCTGCATGG
TAACGGATTGGTGGGTCGAGGGCGGGCGATTGCGTCACCCTTATTGATAA
GGCGGGATAAGGGCGGGGGAGGGGAAGCGGGGAGGTTGTTGAAAACGACG
GAGGTGTAA
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Coding sequence (CDS) from alignment at scaffold_4:567012..568520-

>mRNA_2014 ID=mRNA_2014|Name=jgi.p|Nanoce1779_2|659824|organism=Nannochloropsis oceanica|type=CDS|length=2268bp|location=Sequence derived from alignment at scaffold_4:567012..568520- (Nannochloropsis oceanica)
ACGGCCACTCCCACCACTGTCGAAGGCGCTTTGCAAGACCTTCTGTTGCG
CAACACCAAAGACCTACAACTCAAAGGGAAAACCGTTACTTTAGACAACG
TGCGTGGACAGAAAGAACATCAACAGAAGGAGGTCCGCCTGCGTCGGCAG
CTGCTGAGAGGACGGACACGTTTCTCGGTCCGTATTGTAGAGGAAGGAGG
AAAAACTGCAACAACGGGCATAGAAGGAAATAAGGCTGATAACGATAATG
ATGACACATTAAGCAACAATAGAAAAAGGAAGAGGAAGAGATGGGTGGCT
TCTCCTCAAGATTACGTGGCGTTGGAAGGAGCCTGGCAAGGGTACATGCA
GCAACTATTGGGCGTACACAAGGAGGAGAAAGAGGAGAAGAAGAAGCAGG
AGGATGAAGGGAGGGAGACAGAGGACCGAGATAGCAACGTCAATGTTGGA
GCTGTCATGGCATCAAGAAGCAGCAGCGCCAAGCCTGCTTTCTCGTCGAA
GAGAAGCGCCGAGAGGAATGTGGTAGGAGCTGACATGCATGGGGCCCCGC
TGCGTGTGGTGGCTTCCAAGTGCCCTTCAGAGGTGGGTTTGGAAGGATTA
GTTCTACGAGAGAGCCGTGGGGCCTTGCACATACTGCCAATGTCGGACGG
GCATCGACGGGTGAGAATCGTGCCGAAAGCTGGGCGTCGTTTTCAGGCCA
CGGTGGGGGTAGGGAGAAATAAAGCAGGTGGGGGGGGGAGTGCAGGTGGG
AGTGAAGGTAAGAAGGAGTTGAAATTAATTCTGCATGGTAACGGATTGGT
GGGTCGAGGGCGGGCGATTGCGTCACCCTTATTGATAAGGCGGGATAAGG
GCGGGGGAGGGGAAGCGGGGAGGTTGTTGAAAACGACGGAGGTGTAAATG
TTCACAGGTCTGGCCAGCAGCAGGAGACGGGAGCGTGTCCTTCTGGGTCT
CGATCAGGCCTTTGCTCCCTCTCTCGCGACGGCATCATCGTCTCGAAATA
CGGTGGCGGGAACAGAGTCCGTAGGAGCAGCAGCAGGCCAAGCAGGAGGC
ACGACCGCCAGCAGTAACAACGCCTTGTACGCAGAATTGCCGACACAGAT
ATCGACGATTGACATACGATTACGCAGTGATAAGACGGCCACTCCCACCA
CTGTCGAAGGCGCTTTGCAAGACCTTCTGTTGCGCAACACCAAAGACCTA
CAACTCAAAGGGAAAACCGTTACTTTAGACAACGTGCGTGGACAGAAAGA
ACATCAACAGAAGGAGGTCCGCCTGCGTCGGCAGCTGCTGAGAGGACGGA
CACGTTTCTCGGTCCGTATTGTAGAGGAAGGAGGAAAAACTGCAACAACG
GGCATAGAAGGAAATAAGGCTGATAACGATAATGATGACACATTAAGCAA
CAATAGAAAAAGGAAGAGGAAGAGATGGGTGGCTTCTCCTCAAGATTACG
TGGCGTTGGAAGGAGCCTGGCAAGGGTACATGCAGCAACTATTGGGCGTA
CACAAGGAGGAGAAAGAGGAGAAGAAGAAGCAGGAGGATGAAGGGAGGGA
GACAGAGGACCGAGATAGCAACGTCAATGTTGGAGCTGTCATGGCATCAA
GAAGCAGCAGCGCCAAGCCTGCTTTCTCGTCGAAGAGAAGCGCCGAGAGG
AATGTGGTAGGAGCTGACATGCATGGGGCCCCGCTGCGTGTGGTGGCTTC
CAAGTGCCCTTCAGAGGTGGGTTTGGAAGGATTAGTTCTACGAGAGAGCC
GTGGGGCCTTGCACATACTGCCAATGTCGGACGGGCATCGACGGGTGAGA
ATCGTGCCGAAAGCTGGGCGTCGTTTTCAGGCCACGGTGGGGGTAGGGAG
AAATAAAGCAGGTGGGGGGGGGAGTGCAGGTGGGAGTGAAGGTAAGAAGG
AGTTGAAATTAATTCTGCATGGTAACGGATTGGTGGGTCGAGGGCGGGCG
ATTGCGTCACCCTTATTGATAAGGCGGGATAAGGGCGGGGGAGGGGAAGC
GGGGAGGTTGTTGAAAACGACGGAGGTGTAAATGTTCACAGGTCTGGCCA
GCAGCAGGAGACGGGAGCGTGTCCTTCTGGGTCTCGATCAGGCCTTTGCT
CCCTCTCTCGCGACGGCATCATCGTCTCGAAATACGGTGGCGGGAACAGA
GTCCGTAGGAGCAGCAGCAGGCCAAGCAGGAGGCACGACCGCCAGCAGTA
ACAACGCCTTGTACGCAGAATTGCCGACACAGATATCGACGATTGACATA
CGATTACGCAGTGATAAG
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Synonyms
Publications