Properties
| Property Name | Value |
|---|
| TranscriptId | 578824 |
| Track | FilteredModels2 |
| ProteinId | 578738 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:564446..566182 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2013 ID=mRNA_2013|Name=jgi.p|Nanoce1779_2|578738|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
CTGCTGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCC
TCTCTGGCTGTTCCTATTATTGGTGCTGGTGGTTTCGACTTCTTTGAACG
TGAGCGAAGGGCCCGGGAGGAGATAGAGGCGGTAGCGGCGGTAGGGGTGG
GAATGACGCTGCTGCTCTCATGAGTGGTTGTCCTCTTCGTCTGAGGAGTG
GTGGAGGGAGTGAGGGAAGTAGTGGAGGACGGCTCCTCTGTCGTGGCCTT
CTTTCTGTTCGCCATAGCTCGCACGCTTTGCTTCTGAAGTGTCTGCTCCT
TCTCTTCCTCTTTCTCTTTCACTACCTCGTCCTCCTGCCGCCGCTTTTGC
CGCTTCTGCATCTGCTTCCGTCTCTGTCCCTGCTGCTTCTGCCGCTCCTG
GGGCTCATCGGTGGTGGGAGATTTGCTACTGCTCTTGCGGTCCACAGACA
AAGGAGACAAAGAATCGGGGATGGAAGAACCCTTCTCAATCGCAAAAACT
ACATCAGGGGGGGCGGTAGTGGCAGCAGGAGGAGGAAAGGAAGAAGGAGG
AGAAGAAAGGGAAGGAAGGAGTTCGAGATTCATTAAAGGGGTGGGAGGAT
GGGAGTGAAGAGGGGGAAAGTATGAAGTGTACTGAGCGCTGTTATTATTG
TCGCAGCTGCTGTTGCTGGTCTTGCTGGCGTTGCTGTTGCGACTGTTGCT
GCTATTGCGGCCACAGTCGTTTCCGATGGACTCGATCGTGAAAGATGCTG
TCCTAGAGGTAGGGCTGCTCCGAAAGCTGGGGCTGTTGGCGCTGCAGACA
CCGCTACTGCTACTGGCATTGCTGATACTGCTGTCAATACGACGACGCTT
CTTAAATGGGAGGGAGATGGCTACTTCACCTCCTTCTCTGCCTTCTCCTC
TCCTATGGTCATGGTGGGCCTGGGCGTGCAGTGGCCGTGGTTCTGCTGCT
GCTGCTGCTCCACATGTGTGCTGCTGTGATTGTTGCTGATGGTGGTCGAC
GTGTATCGCGGAGGAAATCTGGGACGTCATGTTGTCGTTGGTAATACGGC
TGATGCTTCGAAAAGTTGGTCCTTCGATCCAAAAAGAGGCAGGTGCATCA
GAAGTGGAGGAGAAAGATGAGTGAGGAGGAGGAAACGAGGCACCTCTTTG
TCCTTGTGGGTGAATGTATCCGCTTTGACCACTGAGAGGGACGGCGTTAC
GCCCGAGCCGCATGCTATCGGGGGTGGGGGCGGAAGGTCGGGAAGGAGGG
CCTTGATTCAAGCAGTCGCGGGGCGGGGATGGAGGCTTGGGCCCGGATGG
CAGTAACTCCGTCTGCGTGCCAGAGTTTGTGTAGCGAGTCCCGTACTGGT
CATAGTTTTCCAATAATTTGCTGTAATTTAGCAGGACTTTGTCGTTGCTC
CAGGTGGTAGTGGGCATGATGTGGGGAAGGGGAGGAGAGATGGGCGCGAG
GGCCCGGGGAGGCTCACCATTCGTGTGGTAGACCATAGGCTTGTTCAATT
CCTGCAGTTGCTGCGGCAGTAAACCGGCTTCAACTCGCCTCTGCGTCGCC
AAGTTGCTTTTCGGTTGAGAAGTGGATTGCGCGTGCTCACACCCGAGGCC
ACGCTCCGAGCAGGCAGGGCTGCAGGCTCTCATGATGAGGACTGAGCCAA
GTGTGAGGCGCAACGTGGTGAGGGGCAACGGTACTTGTGCTTGTTGCCTT
ATGTTCTCAACTCACTTACTCTCTGGCTTTTTACTGT back to topprotein sequence of jgi.p|Nanoce1779_2|578738 >mRNA_2013-protein ID=mRNA_2013-protein|Name=jgi.p|Nanoce1779_2|578738|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSGCPLRLRSGGGSEGSSGGRLLCRGLLSVRHSSHALLLKCLLLLFLFLF
HYLVLLPPLLPLLHLLPSLSLLLLPLLGLIGGGRFATALAVHRQRRQRIG
DGRTLLNRKNYIRGGGSGSRRRKGRRRRRKGRKEFEIH* back to topmRNA from alignment at scaffold_4:564446..566182+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2013 ID=mRNA_2013|Name=jgi.p|Nanoce1779_2|578738|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_4:564446..566182+ (Nannochloropsis oceanica)
CTGCTGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGTTGCTGCTGCC
TCTCTGGCTGTTCCTATTATTGGTGCTGGTGGTTTCGACTTCTTTGAACG
TGAGCGAAGGGCCCGGGAGGAGATAGAGGCGGTAGCGGCGGTAGGGGTGG
GAATGACGCTGCTGCTCTCATGAGTGGTTGTCCTCTTCGTCTGAGGAGTG
GTGGAGGGAGTGAGGGAAGTAGTGGAGGACGGCTCCTCTGTCGTGGCCTT
CTTTCTGTTCGCCATAGCTCGCACGCTTTGCTTCTGAAGTGTCTGCTCCT
TCTCTTCCTCTTTCTCTTTCACTACCTCGTCCTCCTGCCGCCGCTTTTGC
CGCTTCTGCATCTGCTTCCGTCTCTGTCCCTGCTGCTTCTGCCGCTCCTG
GGGCTCATCGGTGGTGGGAGATTTGCTACTGCTCTTGCGGTCCACAGACA
AAGGAGACAAAGAATCGGGGATGGAAGAACCCTTCTCAATCGCAAAAACT
ACATCAGGGGGGGCGGTAGTGGCAGCAGGAGGAGGAAAGGAAGAAGGAGG
AGAAGAAAGGGAAGGAAGGAGTTCGAGATTCATTAAAGGGGTGGGAGGAT
GGGAGTGAAGAGGGGGAAAGTATGAAGTGTACTGAGCGCTGTTATTATTG
TCGCAGCTGCTGTTGCTGGTCTTGCTGGCGTTGCTGTTGCGACTGTTGCT
GCTATTGCGGCCACAGTCGTTTCCGATGGACTCGATCGTGAAAGATGCTG
TCCTAGAGGTAGGGCTGCTCCGAAAGCTGGGGCTGTTGGCGCTGCAGACA
CCGCTACTGCTACTGGCATTGCTGATACTGCTGTCAATACGACGACGCTT
CTTAAATGGGAGGGAGATGGCTACTTCACCTCCTTCTCTGCCTTCTCCTC
TCCTATGGTCATGGTGGGCCTGGGCGTGCAGTGGCCGTGGTTCTGCTGCT
GCTGCTGCTCCACATGTGTGCTGCTGTGATTGTTGCTGATGGTGGTCGAC
GTGTATCGCGGAGGAAATCTGGGACGTCATGTTGTCGTTGGTAATACGGC
TGATGCTTCGAAAAGTTGGTCCTTCGATCCAAAAAGAGGCAGGTGCATCA
GAAGTGGAGGAGAAAGATGAGTGAGGAGGAGGAAACGAGGCACCTCTTTG
TCCTTGTGGGTGAATGTATCCGCTTTGACCACTGAGAGGGACGGCGTTAC
GCCCGAGCCGCATGCTATCGGGGGTGGGGGCGGAAGGTCGGGAAGGAGGG
CCTTGATTCAAGCAGTCGCGGGGCGGGGATGGAGGCTTGGGCCCGGATGG
CAGTAACTCCGTCTGCGTGCCAGAGTTTGTGTAGCGAGTCCCGTACTGGT
CATAGTTTTCCAATAATTTGCTGTAATTTAGCAGGACTTTGTCGTTGCTC
CAGGTGGTAGTGGGCATGATGTGGGGAAGGGGAGGAGAGATGGGCGCGAG
GGCCCGGGGAGGCTCACCATTCGTGTGGTAGACCATAGGCTTGTTCAATT
CCTGCAGTTGCTGCGGCAGTAAACCGGCTTCAACTCGCCTCTGCGTCGCC
AAGTTGCTTTTCGGTTGAGAAGTGGATTGCGCGTGCTCACACCCGAGGCC
ACGCTCCGAGCAGGCAGGGCTGCAGGCTCTCATGATGAGGACTGAGCCAA
GTGTGAGGCGCAACGTGGTGAGGGGCAACGGTACTTGTGCTTGTTGCCTT
ATGTTCTCAACTCACTTACTCTCTGGCTTTTTACTGT back to topCoding sequence (CDS) from alignment at scaffold_4:564446..566182+ >mRNA_2013 ID=mRNA_2013|Name=jgi.p|Nanoce1779_2|578738|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_4:564446..566182+ (Nannochloropsis oceanica)
ATGAGTGGTTGTCCTCTTCGTCTGAGGAGTGGTGGAGGGAGTGAGGGAAG
TAGTGGAGGACGGCTCCTCTGTCGTGGCCTTCTTTCTGTTCGCCATAGCT
CGCACGCTTTGCTTCTGAAGTGTCTGCTCCTTCTCTTCCTCTTTCTCTTT
CACTACCTCGTCCTCCTGCCGCCGCTTTTGCCGCTTCTGCATCTGCTTCC
GTCTCTGTCCCTGCTGCTTCTGCCGCTCCTGGGGCTCATCGGTGGTGGGA
GATTTGCTACTGCTCTTGCGGTCCACAGACAAAGGAGACAAAGAATCGGG
GATGGAAGAACCCTTCTCAATCGCAAAAACTACATCAGGGGGGGCGGTAG
TGGCAGCAGGAGGAGGAAAGGAAGAAGGAGGAGAAGAAAGGGAAGGAAGG
AGTTCGAGATTCATTAA back to top
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