jgi.p|Nanoce1779_2|578737, mRNA_2012 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578737
Unique NamemRNA_2012
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1174
Alignment locationscaffold_4:563300..564473 -

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Properties
Property NameValue
TranscriptId578823
TrackFilteredModels2
ProteinId578737
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:563300..564473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578737gene_2012Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578737mRNA_2012-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2012CDS_2012Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2012 ID=mRNA_2012|Name=jgi.p|Nanoce1779_2|578737|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp
GCAGCAACAGCAGCAACAGCAGCAGCAGACGCCACAGCCACCAAGAAGGA
AACGCTTCGCAGCGGAAGCAAGAAGGTGATGGGTGGAGAAAAAGGAGCAA
CAGCAGCAACAGCAGCAACAGCAGCTATAGCCTCCGGAGGGGTGGGAAAG
GCAACAGCAGCAGCAGCAGGATCAGCAGCACGTAGGCGTAGGTGTCCTTC
GTCGCGCGTTGAAAACGCAAGCACCACAACCACTGCCACGGCCCCCAAGA
AGAAAAAAACTTCGCGAGCCAAAGCTACCTTCCGTTCAACCTCATCTTCA
TCCACTTCTATGTTTTTTTCGACAATGTTTCCGTCCTCCGGTTCTCTCAC
GGGCCGACGGGTGTCACACCGACAAAGCAGTAGGGGAGGAGGAAGGGAGG
GCGGTGGGGGGGGAAAGCTGGACGTGCTGGAGTTGGAGGAGGCGATTGAT
GATGACGGCACTGTATGGAGAGTAGGGGATCTGGGCTTTATTCAGTATCA
TATTTATCCGATGTGGCCTTTGAAGGTGCGGGGATTGAAGCTGACGACGG
ACGGGGAGACGACTGCGTGTATTGACTTTTTTGGGCGGACGATGACGAGC
GTCGAGTGTGCGCTTAGTGATTTAAGAAGATACGAGACTTTATTTCCCAA
GTTGTACTCCTTATCCATTTCGGAAATGTATGAGAATGCGATTGTGGACT
CTGTGGTGGCTTTTCGAGAACATCATGAATTGTCGGAGCGGGGTTTCTTG
GAGAAGTGTGGATTGGTGAAAACGAAGGAGAGTCAGGCGTTCGAGAAGTT
TTTGAAAGAGATGGACACAGGCAGCACAATGGTCGAATGGAACAGATTGA
ATAAACTATTCATGACAGGTGACAAACGGGTGCAGGTGGAGGACGAAAGG
GCGGGCAAAGCGAATGCTGATGGAGGGCGAAAGAGTGGGAGACGTGATGG
CTCTGAGAGACCGAAGAGAAAAAGAAACACGTAGTGCAACATTTGCATGA
AACTGTTCGCAACATTTGCATGTAAATGTTTCCCTTCCCCCTGAAAGACA
AGCAATTATATTATTCAGTGATGTCAAACAAAATGTCTAAGAAAATCAGG
GAAAGACGACACTGGAACCAAAAAGAGTAGAAGTTATGTAAATTGTCGAA
ACCATGTCAAAAGTTTTACGCGAG
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protein sequence of jgi.p|Nanoce1779_2|578737

>mRNA_2012-protein ID=mRNA_2012-protein|Name=jgi.p|Nanoce1779_2|578737|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MGGEKGATAATAATAAIASGGVGKATAAAAGSAARRRRCPSSRVENASTT
TTATAPKKKKTSRAKATFRSTSSSSTSMFFSTMFPSSGSLTGRRVSHRQS
SRGGGREGGGGGKLDVLELEEAIDDDGTVWRVGDLGFIQYHIYPMWPLKV
RGLKLTTDGETTACIDFFGRTMTSVECALSDLRRYETLFPKLYSLSISEM
YENAIVDSVVAFREHHELSERGFLEKCGLVKTKESQAFEKFLKEMDTGST
MVEWNRLNKLFMTGDKRVQVEDERAGKANADGGRKSGRRDGSERPKRKRN
T*
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mRNA from alignment at scaffold_4:563300..564473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2012 ID=mRNA_2012|Name=jgi.p|Nanoce1779_2|578737|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp|location=Sequence derived from alignment at scaffold_4:563300..564473- (Nannochloropsis oceanica)
GCAGCAACAGCAGCAACAGCAGCAGCAGACGCCACAGCCACCAAGAAGGA
AACGCTTCGCAGCGGAAGCAAGAAGGTGATGGGTGGAGAAAAAGGAGCAA
CAGCAGCAACAGCAGCAACAGCAGCTATAGCCTCCGGAGGGGTGGGAAAG
GCAACAGCAGCAGCAGCAGGATCAGCAGCACGTAGGCGTAGGTGTCCTTC
GTCGCGCGTTGAAAACGCAAGCACCACAACCACTGCCACGGCCCCCAAGA
AGAAAAAAACTTCGCGAGCCAAAGCTACCTTCCGTTCAACCTCATCTTCA
TCCACTTCTATGTTTTTTTCGACAATGTTTCCGTCCTCCGGTTCTCTCAC
GGGCCGACGGGTGTCACACCGACAAAGCAGTAGGGGAGGAGGAAGGGAGG
GCGGTGGGGGGGGAAAGCTGGACGTGCTGGAGTTGGAGGAGGCGATTGAT
GATGACGGCACTGTATGGAGAGTAGGGGATCTGGGCTTTATTCAGTATCA
TATTTATCCGATGTGGCCTTTGAAGGTGCGGGGATTGAAGCTGACGACGG
ACGGGGAGACGACTGCGTGTATTGACTTTTTTGGGCGGACGATGACGAGC
GTCGAGTGTGCGCTTAGTGATTTAAGAAGATACGAGACTTTATTTCCCAA
GTTGTACTCCTTATCCATTTCGGAAATGTATGAGAATGCGATTGTGGACT
CTGTGGTGGCTTTTCGAGAACATCATGAATTGTCGGAGCGGGGTTTCTTG
GAGAAGTGTGGATTGGTGAAAACGAAGGAGAGTCAGGCGTTCGAGAAGTT
TTTGAAAGAGATGGACACAGGCAGCACAATGGTCGAATGGAACAGATTGA
ATAAACTATTCATGACAGGTGACAAACGGGTGCAGGTGGAGGACGAAAGG
GCGGGCAAAGCGAATGCTGATGGAGGGCGAAAGAGTGGGAGACGTGATGG
CTCTGAGAGACCGAAGAGAAAAAGAAACACGTAGTGCAACATTTGCATGA
AACTGTTCGCAACATTTGCATGTAAATGTTTCCCTTCCCCCTGAAAGACA
AGCAATTATATTATTCAGTGATGTCAAACAAAATGTCTAAGAAAATCAGG
GAAAGACGACACTGGAACCAAAAAGAGTAGAAGTTATGTAAATTGTCGAA
ACCATGTCAAAAGTTTTACGCGAG
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Coding sequence (CDS) from alignment at scaffold_4:563300..564473-

>mRNA_2012 ID=mRNA_2012|Name=jgi.p|Nanoce1779_2|578737|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_4:563300..564473- (Nannochloropsis oceanica)
ATGGGTGGAGAAAAAGGAGCAACAGCAGCAACAGCAGCAACAGCAGCTAT
AGCCTCCGGAGGGGTGGGAAAGGCAACAGCAGCAGCAGCAGGATCAGCAG
CACGTAGGCGTAGGTGTCCTTCGTCGCGCGTTGAAAACGCAAGCACCACA
ACCACTGCCACGGCCCCCAAGAAGAAAAAAACTTCGCGAGCCAAAGCTAC
CTTCCGTTCAACCTCATCTTCATCCACTTCTATGTTTTTTTCGACAATGT
TTCCGTCCTCCGGTTCTCTCACGGGCCGACGGGTGTCACACCGACAAAGC
AGTAGGGGAGGAGGAAGGGAGGGCGGTGGGGGGGGAAAGCTGGACGTGCT
GGAGTTGGAGGAGGCGATTGATGATGACGGCACTGTATGGAGAGTAGGGG
ATCTGGGCTTTATTCAGTATCATATTTATCCGATGTGGCCTTTGAAGGTG
CGGGGATTGAAGCTGACGACGGACGGGGAGACGACTGCGTGTATTGACTT
TTTTGGGCGGACGATGACGAGCGTCGAGTGTGCGCTTAGTGATTTAAGAA
GATACGAGACTTTATTTCCCAAGTTGTACTCCTTATCCATTTCGGAAATG
TATGAGAATGCGATTGTGGACTCTGTGGTGGCTTTTCGAGAACATCATGA
ATTGTCGGAGCGGGGTTTCTTGGAGAAGTGTGGATTGGTGAAAACGAAGG
AGAGTCAGGCGTTCGAGAAGTTTTTGAAAGAGATGGACACAGGCAGCACA
ATGGTCGAATGGAACAGATTGAATAAACTATTCATGACAGGTGACAAACG
GGTGCAGGTGGAGGACGAAAGGGCGGGCAAAGCGAATGCTGATGGAGGGC
GAAAGAGTGGGAGACGTGATGGCTCTGAGAGACCGAAGAGAAAAAGAAAC
ACGTAG
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Synonyms
Publications